mRNA_H-elongata_contig70459.14702.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: D8LH25_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH25_ECTSI) HSP 1 Score: 246 bits (628), Expect = 1.300e-70 Identity = 207/548 (37.77%), Postives = 281/548 (51.28%), Query Frame = 1
Query: 1 PDFASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQ---RTNRLAADVHPPPTNFPQSDERGEAMVVGIDRDDLSARDGRVGREG-------------------KREPPKDRDVQNWSHFKPMLDNQAAEIGGHRDPQMTNLADGRYDEAAARSSFADAVTEWRRDQKQHVTSEA-----SSMSKPAPGSRAPVS---SALGDKKYIDATKSYTSGSSKGG------GGLLTCSSITEHWTNPFTSPR---SRESNAMTPASYEQLAAPEPSVASPSLLSAATASGVEAWSCAYQASGIAPILDEEAEHAAFRRAVAEWKCSGKGNATNRECGTED--AHGR-VDGESSTQNAPT----PGRIAEAVAKALREQMDDDHRAQARELERKKREALSELGAARRSHVKSQSFQTLGGCGG---EEQDEDQLGTGGLRERESMSN--PSSQGFVAGDRRAGCAGARSEEEHVT---ESQRGVKIEFLESVLGADLSTDCCGMGYLVEEGGSEEE 1482
P FASKE+ W V +TL WLDSLGL +R++F+QNEISG ILL+VG DDL+YM++ +LAHRKRIL GIE+LR+ + L A++ PPP + ++RD+ R +G G + P + Q+WS KP+ +NQ GG P NLADG+YDE+AA SSF DAV EWR + K T+ A SS+ +PA RAP++ SA ++KY D + + ++ G GG TE W NPF+SPR +++ + +E P V+S + A + + A LDEEAEH AFR+AVAEW T G D A GR + G SS Q A R AEA+A+ LR+QMD +H +QA+ELE +KR L L +R K + GG EEQD+D RERE + PSS G R +G +E E++ GV+IE +ESVLGADLS + G+ Y+V+E S +E
Sbjct: 109 PAFASKEVTRWGVGDTLGWLDSLGLEKYRSVFQQNEISGTILLEVGLDDLDYMDVRVLAHRKRILKGIEDLRRGGRKKRALDANMPPPPAPALELLPNQTTSSTRVNRDEKGPRGEGIGEGGAAAETTSQIAPEDCGGVGRRYSPLSGGNKQHWSTIKPLSENQRD--GGGLSPTADNLADGQYDESAASSSFKDAVAEWRGEGKYSTTTSATEGRASSLHRPAVVGRAPLAGMPSAAEEEKYEDMQLVFNAKPARPGLLGGREGGRAGMGEETECWVNPFSSPRIGVKGDNSQLVDLGHE------PGVSSHGTETLTVAGSKQQQGVREKGHDPALALDEEAEHEAFRKAVAEWNRGKNTGVTADGSGVRDGSASGRGIGGISSAQTATEVEIPSRRTAEAMAEELRKQMDAEHCSQAKELEEEKRALLEGLERSREGETKGDQLELGAPDGGTEVEEQDDD----ASWREREDARSVGPSSVCSSTG-RSSGSDRQDAEAENIGCGGHDSSGVEIEVVESVLGADLSIEG-GVSYVVDECDSGDE 642
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A6H5JM42_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM42_9PHAE) HSP 1 Score: 221 bits (563), Expect = 9.490e-61 Identity = 202/554 (36.46%), Postives = 277/554 (50.00%), Query Frame = 1
Query: 1 PDFASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQ---RTNRLAADVHPPP-------------TNFPQSDERGEAMVVGIDRDDLSARDGRVGREGKR------EPPKDRDVQNWSHFKPMLDNQAAEIGGHRDPQMTNLADGRYDEAAARSSFADAVTEWRRDQKQHVTSEA------SSMSKPAPGSRAPVS---SALGDKKYIDATKSYTSGSSKGG------GGLLTCSSITEHWTNPFTSPRSRESNAMTPASYEQLA--APEPSVASPSLLSAATASGVEAWSCAYQASGIAPILDEEAEHAAFRRAVAEWKCSGKGNATNRECGTED--AHGR-VDGESSTQNAPT----PGRIAEAVAKALREQMDDDHRAQARELERKKREALSELGAARRSHVKSQSFQTLGGCGG----EEQDEDQLGTGG--LRERESMSNPSSQGFVAGDRRA-------GCAGARSEEEHVTESQRGVKIEFLESVLGADLSTDCCGMGYLVEEGGSEEEN 1485
P FASKE+ W V +TL WLDSLGL +R++F+QNEISG ILL+VG DDL+YM++ +LAHRKRIL GIE+LR+ + L A++ PPP + + DERG + + + ++ +E R P + Q+WS KP+ +NQ G P N ADG+Y+E AA SS DAV EWR + K T+ A SS+ +P RAP++ S ++ + D + + ++ G GG + TE W NPF+SPR E + QL EP +S + A + + A LDEEAEH AFR+AVAEW T G D A GR + G SS Q A R AEA+A+ LR+QMD +H +QA+ELE +KR L L ++R K + LG G EEQD+D G +R S S SS G +G R GC G + V+IE +ESVLGADLS++ G+ Y+V+E S +E+
Sbjct: 173 PAFASKEVARWGVGDTLGWLDSLGLEKYRSMFQQNEISGTILLEVGLDDLDYMDVRVLAHRKRILKGIEDLRRGGGKKQALDANMPPPPAPALELLPDQTTSSTRVKRDERGPRGEGKEEGEAAAETTSQIAQEDCRGVGHRYSPLSGGNKQHWSAIKPLSENQRD--GDGLSPPAVNPADGQYNEFAAGSSIKDAVAEWRGEGKYSTTTSATEGRAGSSLRRPTVVGRAPLAGMPSTAEEENFEDMQLVFNAKPARPGLLGGREGGRESMGEETECWVNPFSSPRVGEKGENS-----QLVDLGHEPEASSHCTETLTVADSKQLQEMRHTGHDPALALDEEAEHEAFRKAVAEWNRGKNTGVTADGSGIGDGSASGRGIGGISSAQTATEVEIPSRRTAEAMAEELRKQMDAEHTSQAKELEEEKRALLEGLESSREGATKGDQLE-LGAPGEGTEVEEQDDDARWREGEDVRSVGSSSVCSSAGRSSGSERQDTEADNFGCGGH--------DGSGVVEIEVVESVLGADLSSEG-GVSYVVDECDSGDES 709
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A7S2CWQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CWQ5_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.080e-26 Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 1
Query: 10 ASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQRTNRLAADVHPPPTNFPQSD--ERGEAMVVGIDRDDLSARDGRVGREGKREPPKDRDVQNWSHFKPMLDNQAAEIGGHRDPQMTNLADGRYDEAAARSSFADAVTEWR 537
A K++ W V +T+EW+ SLGLG + A+FE NEISGP+L++VG +DL+YM + +LAHRK +L GIE+L++ H PT Q + G G +G E +P K +WS P+ +N + G D + NLADG YDEAA + F +AV WR
Sbjct: 44 AGKQVEAWGVTDTVEWVTSLGLGQYAAVFEANEISGPVLVEVGLEDLDYMQVKVLAHRKVLLKGIEDLKRNGRPTLNLKHHSPTKVGQQRTVSYSASTSAGTSTSSAGIDTGGMG-EANSQPTKG--AVHWSVVTPLSENP---VDGTGDVAV-NLADGMYDEAAQQREFQNAVMAWR 214
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A835YK85_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK85_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.890e-17 Identity = 65/168 (38.69%), Postives = 84/168 (50.00%), Query Frame = 1
Query: 7 FASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQRTNRLA---------------------ADVHPPP-TNFPQSDERGEAMVVGIDRDDLSARDGRVGREGKREP-PKDRDVQNWSHFKPMLDNQAAEIG 441
F ++ +WSV + LEWLD +GL HRA+F NEISGPILL+VG DDL+YM I LAHRK +L GI++LR+ A A V P T+ P DER R +A D V + P P ++WS +P+ DN AA G
Sbjct: 166 FRDRDAGDWSVDDALEWLDMIGLSQHRAVFRDNEISGPILLEVGPDDLDYMRITALAHRKLLLRGIDDLRRNGQPTAVVAPLISAAXXXXXXXXXXXNAQVPAPASTSSPALDERC------CPRGPETADDDDVRKAPPLPPAPAAAQYRHWSAVRPLADNPAANGG 327
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A7S2V2V0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V0_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 6.640e-17 Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 1 PDFASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQ 219
P F +K ++ W V +T+EWL +L L ++ F+QNEISG ILL+VG +DL+YM I +LAHRK +L GIEEL++
Sbjct: 6 PAFYNKTVSTWEVGDTVEWLGALKLPQYKEAFQQNEISGAILLEVGLEDLDYMQITVLAHRKTLLKGIEELKR 78
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A7S1TYX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYX0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.700e-16 Identity = 70/205 (34.15%), Postives = 93/205 (45.37%), Query Frame = 1
Query: 4 DFASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQR---TNRLAADVHPPPTN----FPQSDERGEAMVVGIDRDDLSARD---------GRVGREGKREPPKDRDVQNWSHFKPMLDNQAAEIGGHRDPQMTNLADGRYDEAAARSSFADAVTEWRRDQKQHVTSEA 570
+ A K WSV++ WL L LG + F +N ISG ILL VG DDL+YM I LAHRK +L GIE+LR T A+ + P++ P +D + A SA + RVG E + P +WS K + A+ GG L G DE A ++F AV EWR K + +EA
Sbjct: 24 ELAQKRAASWSVEDVCAWLSWLNLGAYVPRFRENLISGDILLDVGLDDLDYMRIRALAHRKILLKGIEDLRVNGRVTVASASQIARRPSSARSRVPGADAKALASPAATTTAYYSAEEPSSRPSADGNRVGAEAVTKAPPA--TMHWSQAKQPEPSNASGGGG-----AGGLMGGAIDEEAEHAAFRAAVEEWRSGGKVRIVTEA 221
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A7S1CMJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMJ6_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 8.840e-14 Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 16 KEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQRTNRLAA 240
+E ++W+V TL WLD LGLG + FE N ISG +LL++ +DL+YM I++L HRK I+ G+E LR AA
Sbjct: 23 EEADKWTVPQTLRWLDELGLGNYAPAFESNAISGGVLLELTNEDLDYMTINVLGHRKVIMKGVEALRAAVYGAAA 97
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A8J2SUN7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUN7_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.220e-10 Identity = 58/183 (31.69%), Postives = 77/183 (42.08%), Query Frame = 1
Query: 22 INEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQRTNRLAADVHPPPTNFPQSDERGEAMVVGIDRDDLSARDGRVGREGKREPPKDRDVQNWSHFKPMLD-NQAAEIGGHRDPQMTNLADGRY----------DEAAARSSFADAVTEWR 537
+ WSV + +WL SL L + F NEISG LL +G DDL+YM + LAHRKR+L G+ EL R A ++ +D GRE PP + +WS + + N A PQ A G + DEAA R +F +AV WR
Sbjct: 98 VQRWSVADAGDWLVSLDLAQYCETFASNEISGRELLDLGLDDLDYMGVKALAHRKRLLKGVAELCAAHRRGA----------------------------VAPQDPTFGREKPPAPPSSK--VHWSAVPTLREQNPDAPNPAPHAPQRLADAGGMFSFGNAEAEVLDEAAERKAFQEAVAAWR 250
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A2R5GBD3_9STRA (Kinesin light chain 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBD3_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.950e-10 Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 19 EINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQ 219
E EW+ + +WL SLGL ++ IF +NEI G +LL++G DDL+YMNI+ LAHRK +L + L++
Sbjct: 88 ECPEWTKSDVQQWLHSLGLEKYKKIFAENEIDGAVLLELGVDDLDYMNINALAHRKALLKEVARLKR 154
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Match: A0A7S0SVV3_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVV3_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.170e-9 Identity = 51/194 (26.29%), Postives = 91/194 (46.91%), Query Frame = 1
Query: 7 FASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLNYMNIHILAHRKRILGGIEELRQRTNRLAADVHPPPTNFPQSDERGEAMVVGIDRDDLSARDGRVGREGKREPPKDRDVQNWSHFKPMLDNQAAEIGGHRDPQMTNLADGRYDEAAARSSFADAVTEWRRDQKQHVTSEASSMSKP 588
+ +K++ +W++ + WL +L L + IF+ N+I+G +L+++ DDL+Y+N+ IL HRK IL IE L+ + ++ +++ +N + + GI ++ + + +WS +P+ N I D + DE A + F AV EWR K SE S S+P
Sbjct: 117 YMNKDVKDWTMLDVSHWLIALNLEEYEEIFKVNQINGKVLIELTVDDLDYLNVKILNHRKLILKNIEILKNKMSQGKSNLDDIKSN--------KILSEGIAKESKELSTTYITSXXXXXXXXNL-KSHWSQLEPISSNVL--ISKPNDSAINAADSDVLDEEAEKILFQQAVMEWRNSNK----SEDSKQSEP 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70459.14702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70459.14702.1 >prot_H-elongata_contig70459.14702.1 ID=prot_H-elongata_contig70459.14702.1|Name=mRNA_H-elongata_contig70459.14702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=498bp PDFASKEINEWSVQNTLEWLDSLGLGTHRAIFEQNEISGPILLQVGFDDLback to top mRNA from alignment at H-elongata_contig70459:55..1629+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70459.14702.1 ID=mRNA_H-elongata_contig70459.14702.1|Name=mRNA_H-elongata_contig70459.14702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1575bp|location=Sequence derived from alignment at H-elongata_contig70459:55..1629+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70459:55..1629+ >mRNA_H-elongata_contig70459.14702.1 ID=mRNA_H-elongata_contig70459.14702.1|Name=mRNA_H-elongata_contig70459.14702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2988bp|location=Sequence derived from alignment at H-elongata_contig70459:55..1629+ (Himanthalia elongata Himel1 dioecious)back to top |