mRNA_H-elongata_contig70419.14700.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.170e-43 Identity = 83/144 (57.64%), Postives = 98/144 (68.06%), Query Frame = 1
Query: 94 PADMETLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADACG-NLVHSDSI----YGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYC--GDRTY--LVCQYNPP 498
PADM L+++HN AR C HNADPLTWS TVA+SAAE+A+ L C NL HS YGENLYMC+GS SCYS ERAMEGLY +E+ S S+ YGGHATQILWK+T ++GC +A C G Y LVCQY+PP
Sbjct: 238 PADMTELVDLHNEAR----------CVHNADPLTWSSTVASSAAEHAERLTAQCSSNLFHSTQEQRYGYGENLYMCWGSDSCYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPP 371
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI) HSP 1 Score: 149 bits (377), Expect = 8.220e-40 Identity = 78/143 (54.55%), Postives = 96/143 (67.13%), Query Frame = 1
Query: 97 ADMETLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADACGN-LVHSDSI----YGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYCGDR----TYLVCQYNPP 498
ADM L+++HN AR C HNADPLTWS TVA+SAAE+A+ L C + L HS YGENLYMC+GS SCYS E+AMEGLY +E+ S+ YGGHATQILWK T ++GC +A C + T+LVCQY+PP
Sbjct: 340 ADMTELVDLHNEAR----------CVHNADPLTWSSTVASSAAEHAERLTAQCSSSLFHSTQEQRYGYGENLYMCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPP 472
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE) HSP 1 Score: 133 bits (335), Expect = 6.500e-36 Identity = 71/143 (49.65%), Postives = 91/143 (63.64%), Query Frame = 1
Query: 94 PADMETLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADAC-GNLVHSDSI----YGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYCGDR----TYLVCQYNP 495
P DM LL++HN AR C H ADPL WSD V +SAAE+A L D C +L HS + YGENL+MC+G+ +CY+ E AME LY EE+ ++ Y GHATQILWK+T ++GC LA C + T+LVCQY+P
Sbjct: 77 PDDMTGLLDLHNEAR----------CVHGADPLGWSDPVTSSAAEHAARLTDQCTSSLFHSTTDQRYGYGENLFMCWGTDTCYNHEYAMEKLYVEEVQFGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDP 209
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI) HSP 1 Score: 127 bits (320), Expect = 8.740e-33 Identity = 68/141 (48.23%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 100 DMETLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADAC-GNLVHSDSI----YGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYCGDR----TYLVCQYNP 495
DM LL++HN AR C H+ADPL WSD V +SAAE+A L D C +L HS YGENL++C+G+ +CY+ + AME LY EE+ + Y GHATQILWK+T +GC LA C + T+LVCQY+P
Sbjct: 166 DMAGLLDLHNEAR----------CVHSADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTREQRYGYGENLFVCWGTDTCYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDP 296
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.080e-32 Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 151 LFRKRVCEHNADPLTWSDTVAASAAEYAQVLADAC-GNLVHSDSI----YGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYCGD----RTYLVCQYNPP 498
L+ C HNADPLTWS TVA+SAAE+A+ L C +L HS YG NLY+ +GS SCYS ++A +GLY +E+ S S+ YGGHATQILWK ++GCA A C + +LVCQY+PP
Sbjct: 223 LYTTSWCVHNADPLTWSSTVASSAAEHAEGLTAQCFSSLFHSTQEQRYGYGANLYIRWGSDSCYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAFLVCQYDPP 347
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE) HSP 1 Score: 105 bits (263), Expect = 4.990e-25 Identity = 62/150 (41.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query: 103 METLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADA--CGNL--VHSDSIYGENLYMCYGSTS----------CYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYCGDR--TY--LVCQYNPP 498
++ LLE+HN AR C H PL +++ VAA+A YA VLA CG+ HS + GEN+++C S+S C+SPE AME Y+ ++ S YG +ATQ+LWK+TT++GCAL C TY LVC+Y+PP
Sbjct: 84 LDRLLELHNAAR----------CMHATGPLEFAEPVAATAKTYADVLASESMCGSAEAAHSTGL-GENVFVCAASSSFSGNGAPTSACFSPEIAMEAFYDSQVGGGSTSTYGPYATQVLWKSTTQIGCALRACEKEGLTYDILVCRYSPP 222
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.520e-23 Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 103 METLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADA--CGNL--VHSDSIYGENLYMCYGSTS----------CYSPERAMEGLYEEEINSSSIDGYGGHATQILWKTTTELGCALAYC--GDRTY--LVCQYNPP 498
++ LLE+HN AR C H PL +++ VAA+A YA +LA CG+ HS + GEN+++C S+S C+SPE AME Y+ ++ YG ATQ+LWK+TT++GCAL C TY LVC+Y+PP
Sbjct: 101 LDRLLELHNAAR----------CMHATGPLEFAEPVAATAKTYADLLASESMCGSAETAHSTGL-GENVFVCAASSSLSGDGAPTAACFSPESAMEAFYDSQVGGGPTSTYGPRATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPP 239
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: A0A8E6Y896_MONPR (Pathogenesis-related protein 1 n=1 Tax=Moniliophthora perniciosa TaxID=153609 RepID=A0A8E6Y896_MONPR) HSP 1 Score: 90.5 bits (223), Expect = 5.370e-20 Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 100 DMETLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADACGNLVHSDSIYGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDG-YGGHATQILWKTTTELGCALAYCGDRTYLVCQYNPP 498
D++ L+ HN R +HNA+PLTW++ VAA+ AQ AD C + HS YGENL GS P A L+ +E++ + H TQ++WK+TTELGCA+A C TY VC YNPP
Sbjct: 28 DIDQWLDAHNEVR----------AQHNAEPLTWNNQVAAT----AQSWADQC-TMEHSGGQYGENLAWGGGSF----PIPAAVKLWADEVSEYDPNNPQYSHFTQVVWKSTTELGCAVADCSGTTYHVCSYNPP 142
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: A0A0W0G968_9AGAR (Pathogenesis-related protein 1 n=10 Tax=Moniliophthora TaxID=221102 RepID=A0A0W0G968_9AGAR) HSP 1 Score: 88.2 bits (217), Expect = 4.230e-19 Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 1
Query: 100 DMETLLEMHNLARRALRLFRKRVCEHNADPLTWSDTVAASAAEYAQVLADACGNLVHSDSIYGENLYMCYGSTSCYSPERAMEGLYEEEINSSSIDG-YGGHATQILWKTTTELGCALAYCGDRTYLVCQYNPP 498
D++ L HN R +HNA PLTW+D VAA+ AQ A+ C + HS YGENL GS P A L+ +E++ + H TQ++WK+TTELGC +A C TY VC YNPP
Sbjct: 28 DVDQWLNAHNEVR----------VQHNAQPLTWNDQVAAT----AQNWANRC-TMQHSGGQYGENLAWGTGSF----PISAAVKLWADEVSEYDPNNPQYSHFTQVVWKSTTELGCGVADCSGTTYYVCNYNPP 142
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Match: H2AN42_KAZAF (SCP domain-containing protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AN42_KAZAF) HSP 1 Score: 88.2 bits (217), Expect = 3.170e-18 Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 160 KRVCEHNADPLTWSDTVAASAAEYAQVLADA---CGNLVHSDSIYGENLYMCYGSTSCYSPERAMEGLYEE----EINSSSIDGYGGHATQILWKTTTELGCALAYCGDRT---YLVCQYNP 495
KR N LTW DT+A+ YAQ LADA G L DS YGENL + YG T A++ Y+E + +S GH TQ++WK+TT +GC + YC D T Y+VC YNP
Sbjct: 122 KRALHQNTSALTWDDTLAS----YAQSLADAYDCSGTLTEDDSSYGENLALGYGITG------AVDAWYDEISEYDFSSPGYSSSTGHFTQVVWKSTTSVGCGIKYC-DTTWGEYVVCSYNP 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70419.14700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70419.14700.1 >prot_H-elongata_contig70419.14700.1 ID=prot_H-elongata_contig70419.14700.1|Name=mRNA_H-elongata_contig70419.14700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp MVTSSTRAPVASVTTASLKSSTSGSAPADMETLLEMHNLARRALRLFRKRback to top mRNA from alignment at H-elongata_contig70419:78..1122- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70419.14700.1 ID=mRNA_H-elongata_contig70419.14700.1|Name=mRNA_H-elongata_contig70419.14700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-elongata_contig70419:78..1122- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70419:78..1122- >mRNA_H-elongata_contig70419.14700.1 ID=mRNA_H-elongata_contig70419.14700.1|Name=mRNA_H-elongata_contig70419.14700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig70419:78..1122- (Himanthalia elongata Himel1 dioecious)back to top |