mRNA_H-elongata_contig70404.14699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70404.14699.1
Unique NamemRNA_H-elongata_contig70404.14699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70404.14699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70404contigH-elongata_contig70404:1546..2098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.0871942-CDS-H-elongata_contig70404:1545..18721622931102.0871942-CDS-H-elongata_contig70404:1545..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70404 1546..1872 +
1691679698.7637107-CDS-H-elongata_contig70404:1545..18721691679698.7637107-CDS-H-elongata_contig70404:1545..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70404 1546..1872 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.1021233-UTR-H-elongata_contig70404:1872..20981622931102.1021233-UTR-H-elongata_contig70404:1872..2098Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70404 1873..2098 +
1691679698.7720578-UTR-H-elongata_contig70404:1872..20981691679698.7720578-UTR-H-elongata_contig70404:1872..2098Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70404 1873..2098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70404.14699.1prot_H-elongata_contig70404.14699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70404 1546..1872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70404.14699.1

>prot_H-elongata_contig70404.14699.1 ID=prot_H-elongata_contig70404.14699.1|Name=mRNA_H-elongata_contig70404.14699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
IREAHDLALDGIEALGNPQSKNRSAIRGAHLIAQQGDRLDAIRVRLELQQ
EPVVPTHPPFTALQNPGRYHIELLDELFKLIFIDGGSSNQMCNGDERLAR
ALRSGYLS*
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mRNA from alignment at H-elongata_contig70404:1546..2098+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70404.14699.1 ID=mRNA_H-elongata_contig70404.14699.1|Name=mRNA_H-elongata_contig70404.14699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=553bp|location=Sequence derived from alignment at H-elongata_contig70404:1546..2098+ (Himanthalia elongata Himel1 dioecious)
ATTCGCGAAGCACATGACCTTGCGCTGGATGGAATCGAGGCTCTTGGAAA
CCCTCAATCGAAAAATCGGTCTGCCATACGTGGAGCGCACCTTATTGCAC
AACAAGGCGACCGCCTTGACGCGATCCGCGTGCGCTTGGAGCTCCAGCAA
GAGCCGGTCGTACCTACCCACCCGCCCTTCACAGCGCTCCAGAACCCTGG
TCGTTACCATATTGAGCTGCTCGACGAGCTTTTCAAGCTCATCTTTATAG
ACGGTGGCAGTTCCAACCAAATGTGCAATGGAGACGAGCGTCTCGCACGC
GCTCTTCGTAGCGGGTATCTCTCCTGAAACATTCGTATTTCCTAGTGCGA
CCTCCCGGACTCGCGCGCACAAGCCAATTGAAGCAGATGTTTGGTGATGT
AAATATAATGAAGGGTTACTACTCGACGTGAGGCTGGCAGAGCGGGTTGC
TGCCATAATATATCGGTCTTTCGGTTTGCGCTCGCTCGCAAGTAGGTGGC
CGTGGGGAGTCCGACAGATGAAACCTCGACCGAAGGAACGGAATAGAAAA
ATC
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Coding sequence (CDS) from alignment at H-elongata_contig70404:1546..2098+

>mRNA_H-elongata_contig70404.14699.1 ID=mRNA_H-elongata_contig70404.14699.1|Name=mRNA_H-elongata_contig70404.14699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig70404:1546..2098+ (Himanthalia elongata Himel1 dioecious)
ATTCGCGAAGCACATGACCTTGCGCTGGATGGAATCGAGGCTCTTGGAAA
CCCTCAATCGAAAAATCGGTCTGCCATACGTGGAGCGCACCTTATTGCAC
AACAAGGCGACCGCCTTGACGCGATCCGCGTGCGCTTGGAGCTCCAGCAA
GAGCCGGTCGTACCTACCCACCCGCCCTTCACAGCGCTCCAGAACCCTGG
TCGTTACCATATTGAGCTGCTCGACGAGCTTTTCAAGCTCATCTTTATAG
ACGGTGGCAGTTCCAACCAAATGTGCAATGGAGACGAGCGTCTCGCACGC
GCTCTTCGTAGCGGGTATCTCTCCTGAATTCGCGAAGCACATGACCTTGC
GCTGGATGGAATCGAGGCTCTTGGAAACCCTCAATCGAAAAATCGGTCTG
CCATACGTGGAGCGCACCTTATTGCACAACAAGGCGACCGCCTTGACGCG
ATCCGCGTGCGCTTGGAGCTCCAGCAAGAGCCGGTCGTACCTACCCACCC
GCCCTTCACAGCGCTCCAGAACCCTGGTCGTTACCATATTGAGCTGCTCG
ACGAGCTTTTCAAGCTCATCTTTATAGACGGTGGCAGTTCCAACCAAATG
TGCAATGGAGACGAGCGTCTCGCACGCGCTCTTCGTAGCGGGTATCTCTC
CTGA
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