mRNA_H-elongata_contig70195.14680.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70195.14680.1
Unique NamemRNA_H-elongata_contig70195.14680.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: D8LGG1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG1_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.510e-30
Identity = 60/99 (60.61%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   10 AKFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPR-GSQASNSLSIKDDWC-EKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            A FYASEI SAIAHMH    +HRDLKASNIV  A GH K++DLG SKQ+E + G      +     +  +K+YTYCGTPH MAPEMVSREGH  A DWW
Sbjct:  130 AIFYASEITSAIAHMHSHGFVHRDLKASNIVFSASGHVKIVDLGCSKQLERQTGGCKDGDVGATGGFSFQKTYTYCGTPHSMAPEMVSREGHGMAADWW 228          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A6H5KAT4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.280e-24
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   52 MHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPR-GSQASNSLSIKDDWC-EKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            MH    +HRDLKASNIV  A GH K++DLG SKQ++ + G      ++    +  +K+YTYCGTPH MAPEMVSREGH  AVDWW
Sbjct:    1 MHSQGFVHRDLKASNIVFSASGHVKIVDLGCSKQLKRQTGVCNDGDVAATGGFSFQKTYTYCGTPHSMAPEMVSREGHGMAVDWW 85          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A835YNF8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.890e-23
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    7 TAKFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            T+ FY +E+VSA+A +H   ++HRDLKASN+VL A GH K++DLG +++I      AS  L         + TYCGT HCMAPEMV+R GH+  VDWW
Sbjct:  141 TSLFYMAELVSAVADVHAAGVVHRDLKASNVVLDARGHIKVVDLGCARRIP---CSASGDL---------ARTYCGTLHCMAPEMVARRGHSCCVDWW 226          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: F0Y9B0_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B0_AURAN)

HSP 1 Score: 95.5 bits (236), Expect = 7.640e-23
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    7 TAKFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            TA +YA+ +  A+AH H   ++HRD+KASN+VL   G A L+D G++ + +P             D  +  +TYCGTPHCMAPEMVS+ GH P VD+W
Sbjct:   55 TATYYAANVADALAHCHEWGVIHRDVKASNVVLNDKGRAILVDFGAAAKFDP-------------DDPKIHFTYCGTPHCMAPEMVSKVGHGPGVDFW 139          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A7S1U157_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U157_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.610e-21
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   13 KFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            + YA+EI + + H H   ++HRDLKASN+++ A GH KL D G ++ ++P                E++ TYCGTPH MAPEM  R GH   VDWW
Sbjct:  118 RVYAAEIAAGLKHCHDAAVVHRDLKASNVLISADGHLKLADFGFARTLDPG---------------ERAETYCGTPHAMAPEMWRRSGHGFGVDWW 198          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A183E4H7_9BILA (Protein kinase domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183E4H7_9BILA)

HSP 1 Score: 88.2 bits (217), Expect = 1.010e-20
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   13 KFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            KFY +EI  A+ H+H L + +RDLK  N++L A GH  L D G SK+            SI+ D   K+Y++CGT   MAPE+VSR GHT + DWW
Sbjct:    8 KFYLAEITLALGHLHSLGIAYRDLKPENVLLDAAGHISLTDFGLSKE------------SIEKDG--KTYSFCGTVEYMAPEVVSRRGHTVSADWW 89          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A7R9R1N4_9ACAR (Hypothetical protein n=2 Tax=Oppiidae TaxID=229795 RepID=A0A7R9R1N4_9ACAR)

HSP 1 Score: 87.4 bits (215), Expect = 2.970e-20
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   13 KFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            KFY +E+  A+ H+H L +++RDLK  NI+L + GH  L D G SK+            S+ +   EKS+++CGT   MAPE++SR+GHT AVDWW
Sbjct:    8 KFYLAELALALDHLHTLGIIYRDLKPENILLDSTGHISLTDFGLSKE------------SLNN---EKSFSFCGTVEYMAPEIISRKGHTTAVDWW 88          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A067QH53_ZOONE (Ribosomal protein S6 kinase alpha-5 n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QH53_ZOONE)

HSP 1 Score: 91.7 bits (226), Expect = 3.960e-20
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   13 KFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            KFY +EIV  I H+H + +++RDLK  NI++ + GH ++ D G  K+  PR               ++ YT+CGTPH +APE++ +E HT AVDWW
Sbjct:   22 KFYTAEIVLGIEHLHKMGVIYRDLKLENILIDSSGHLRITDYGLCKKFHPRQKN------------KREYTFCGTPHYIAPEVIKQEEHTKAVDWW 105          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: I1CFB3_RHIO9 (Protein kinase domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CFB3_RHIO9)

HSP 1 Score: 86.7 bits (213), Expect = 5.510e-20
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   10 AKFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            AKFY +EI+ A+ ++H L +++RDLK  NI+L A GH KL+D G +K ++                 + ++T CGTP  +APE++   G+T AVDWW
Sbjct:   11 AKFYTAEIILALEYLHSLNIVYRDLKPENIILDAAGHIKLVDFGLAKVVK-----------------DTTFTLCGTPDYLAPEIIRARGYTGAVDWW 90          
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Match: A0A813IPK5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IPK5_POLGL)

HSP 1 Score: 89.7 bits (221), Expect = 6.630e-20
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   10 AKFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSKQIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW 300
            AKFY  ++ +A AH HG  ++HRDLK  NI+LC  G++KL D G +K IEP                 ++YT CGTP  +APE++  +GH   VDWW
Sbjct:  110 AKFYGLQVGAAFAHCHGKNIIHRDLKPENILLCPNGYSKLTDFGFAKIIEPG---------------TRTYTLCGTPEYIAPEVLLNKGHGKPVDWW 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70195.14680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGG1_ECTSI1.510e-3060.61Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KAT4_9PHAE4.280e-2456.47Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YNF8_9STRA2.890e-2351.02Kinase-like domain-containing protein n=1 Tax=Trib... [more]
F0Y9B0_AURAN7.640e-2345.92Protein kinase domain-containing protein (Fragment... [more]
A0A7S1U157_9STRA9.610e-2143.75Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A183E4H7_9BILA1.010e-2045.83Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A7R9R1N4_9ACAR2.970e-2044.79Hypothetical protein n=2 Tax=Oppiidae TaxID=229795... [more]
A0A067QH53_ZOONE3.960e-2041.67Ribosomal protein S6 kinase alpha-5 n=2 Tax=Zooter... [more]
I1CFB3_RHIO95.510e-2040.21Protein kinase domain-containing protein n=1 Tax=R... [more]
A0A813IPK5_POLGL6.630e-2043.30Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70195contigH-elongata_contig70195:349..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D8LGG1
KEGG koko:K04345,ko:K10409,ko:K19584
KEGG Pathwayko01522,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04970,ko04971,ko04976,ko05012,ko05016,ko05020,ko05030,ko05031,ko05032,ko05110,ko05146,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05414,map01522,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04970,map04971,map04976,map05012,map05016,map05020,map05030,map05031,map05032,map05110,map05146,map05165,map05166,map05169,map05200,map05203,map05205,map05414
KEGG ModuleM00695
EggNOG free text desc.cAMP-dependent protein kinase activity
EggNOG OGsKOG0616@1,KOG0616@2759
EC2.7.11.11
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-16_003920.1
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.5583968-CDS-H-elongata_contig70195:348..6511622931100.5583968-CDS-H-elongata_contig70195:348..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70195 349..651 +
1691679698.2052588-CDS-H-elongata_contig70195:348..6511691679698.2052588-CDS-H-elongata_contig70195:348..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70195 349..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70195.14680.1prot_H-elongata_contig70195.14680.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70195 349..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70195.14680.1

>prot_H-elongata_contig70195.14680.1 ID=prot_H-elongata_contig70195.14680.1|Name=mRNA_H-elongata_contig70195.14680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MHTAKFYASEIVSAIAHMHGLYLMHRDLKASNIVLCAGGHAKLIDLGSSK
QIEPRGSQASNSLSIKDDWCEKSYTYCGTPHCMAPEMVSREGHTPAVDWW
*
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mRNA from alignment at H-elongata_contig70195:349..651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70195.14680.1 ID=mRNA_H-elongata_contig70195.14680.1|Name=mRNA_H-elongata_contig70195.14680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig70195:349..651+ (Himanthalia elongata Himel1 dioecious)
ATGCACACGGCTAAATTTTATGCGTCCGAGATCGTCTCTGCCATAGCACA TATGCACGGCCTGTACCTCATGCACCGAGACCTCAAGGCGAGCAACATCG TCTTGTGCGCCGGTGGACACGCCAAATTGATCGACCTGGGGAGTTCCAAG CAGATCGAGCCGCGAGGATCACAAGCCAGCAATAGTCTCAGCATCAAGGA CGATTGGTGTGAGAAATCGTACACGTATTGTGGAACACCTCACTGCATGG CACCAGAGATGGTTTCGCGAGAAGGGCACACACCGGCGGTGGACTGGTGG TGA
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Coding sequence (CDS) from alignment at H-elongata_contig70195:349..651+

>mRNA_H-elongata_contig70195.14680.1 ID=mRNA_H-elongata_contig70195.14680.1|Name=mRNA_H-elongata_contig70195.14680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig70195:349..651+ (Himanthalia elongata Himel1 dioecious)
ATGCACACGGCTAAATTTTATGCGTCCGAGATCGTCTCTGCCATAGCACA
TATGCACGGCCTGTACCTCATGCACCGAGACCTCAAGGCGAGCAACATCG
TCTTGTGCGCCGGTGGACACGCCAAATTGATCGACCTGGGGAGTTCCAAG
CAGATCGAGCCGCGAGGATCACAAGCCAGCAATAGTCTCAGCATCAAGGA
CGATTGGTGTGAGAAATCGTACACGTATTGTGGAACACCTCACTGCATGG
CACCAGAGATGGTTTCGCGAGAAGGGCACACACCGGCGGTGGACTGGTGG
TGAATGCACACGGCTAAATTTTATGCGTCCGAGATCGTCTCTGCCATAGC
ACATATGCACGGCCTGTACCTCATGCACCGAGACCTCAAGGCGAGCAACA
TCGTCTTGTGCGCCGGTGGACACGCCAAATTGATCGACCTGGGGAGTTCC
AAGCAGATCGAGCCGCGAGGATCACAAGCCAGCAATAGTCTCAGCATCAA
GGACGATTGGTGTGAGAAATCGTACACGTATTGTGGAACACCTCACTGCA
TGGCACCAGAGATGGTTTCGCGAGAAGGGCACACACCGGCGGTGGACTGG
TGGTGA
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