mRNA_H-elongata_contig70167.14677.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70167.14677.1
Unique NamemRNA_H-elongata_contig70167.14677.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.370e-20
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   10 IDLSLDRRRGRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTLGE 222
            + +S+    G CI+YGM TGI+ L +QAFGA+NNRLVGV FARGTLLTAF+F+PV  LW+YM+ +++  G+
Sbjct:   83 LGVSVSNITGVCIYYGMGTGIELLCAQAFGAKNNRLVGVAFARGTLLTAFLFIPVAFLWFYMENIMLAFGQ 153          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A368R9E7_SETIT (Protein DETOXIFICATION n=3 Tax=Setaria TaxID=4554 RepID=A0A368R9E7_SETIT)

HSP 1 Score: 57.0 bits (136), Expect = 9.870e-8
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 SALIDLSLDRRRGRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTLGE 222
            SA I  SL    G  + YGMA+ ++TL  QA+GA+  R VG    R  +   F+ +P+++LW +MD ++V +G+
Sbjct:   85 SAAIATSLANVSGFSLLYGMASALETLCGQAYGAKQYRKVGADTYRAVVTLLFVCIPLSLLWVFMDKILVLIGQ 158          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A7S3JA02_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JA02_9SPIT)

HSP 1 Score: 52.4 bits (124), Expect = 8.900e-7
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   46 IFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTLGE 222
            I  G+A G+DTLASQAFG +NN L G+ F R  +++  IF+P  +  Y+ + ++  LG+
Sbjct:   15 ISIGLAAGMDTLASQAFGNRNNYLAGLYFHRAMIISTLIFLPQLVTLYFAEDILQFLGQ 73          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A8J5UXU1_9ASCO (Uncharacterized protein n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5UXU1_9ASCO)

HSP 1 Score: 53.1 bits (126), Expect = 2.250e-6
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   37 GRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTL 216
            G   F GMAT +DT  SQAFG+ N  +VGV F R +L+   I +P+ I+W+  + ++V L
Sbjct:   87 GLATFRGMATSLDTFCSQAFGSGNKTMVGVYFQRCSLMILTITIPLIIIWFNSEAILVKL 146          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: W0TFM4_KLUMD (Uncharacterized transporter C4B3.13 n=1 Tax=Kluyveromyces marxianus (strain DMKU3-1042 / BCC 29191 / NBRC 104275) TaxID=1003335 RepID=W0TFM4_KLUMD)

HSP 1 Score: 53.1 bits (126), Expect = 2.250e-6
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   46 IFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIV 204
            IF G+AT +DT+  QAFGA N  +VG+ F RG  ++    +P+T  WY  D+V
Sbjct:   97 IFIGIATCLDTVCPQAFGAGNYEMVGLYFQRGVAISLVCSIPITAFWYKSDVV 149          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: UPI001F5D5B0B (protein DETOXIFICATION 16-like n=3 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D5B0B)

HSP 1 Score: 52.8 bits (125), Expect = 3.080e-6
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   37 GRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTLGE 222
            G  +  GMAT +DTL  QA+GA+   L+G+   R  L+   + +PV +LW+Y   V++ +G+
Sbjct:   82 GFSLMQGMATALDTLCGQAYGARQYHLLGIYKQRAMLILTLVSIPVAVLWFYTGSVLLLVGQ 143          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A5J9TZQ5_9POAL (Protein DETOXIFICATION n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TZQ5_9POAL)

HSP 1 Score: 52.8 bits (125), Expect = 3.090e-6
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 SALIDLSLDRRRGRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTL 216
            SA +  S     G  +  GMA+ +DTL  QAFGA+ + L+GV   R  ++ A + VPV I+W Y D ++V L
Sbjct:   62 SASLATSFAGVTGFSLLTGMASSLDTLCGQAFGAEQHHLLGVYKQRAMVVLALVSVPVAIVWAYTDKILVVL 133          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A1E5W0C4_9POAL (Protein DETOXIFICATION n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5W0C4_9POAL)

HSP 1 Score: 52.8 bits (125), Expect = 3.160e-6
Identity = 24/74 (32.43%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 SALIDLSLDRRRGRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIVVVTLGE 222
            S  I  S+    G  + +GMA+ ++T+  QA+GA+  R +GV   R  +   F+ +P+++LW +MD ++V +G+
Sbjct:   30 STAIATSIANVSGFSLLFGMASALETMCGQAYGAKQYRQLGVDTYRAVVTLLFVCIPLSLLWVFMDKILVLIGQ 103          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A642UXZ3_DIURU (Uncharacterized protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UXZ3_DIURU)

HSP 1 Score: 52.4 bits (124), Expect = 4.250e-6
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   46 IFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMDIV 204
            IF GMAT +DTL  QA+GA    LV +   R T+L   IFVPV + W+Y D V
Sbjct:  204 IFEGMATALDTLCPQAYGAGQYELVSLRVQRSTVLGWCIFVPVAVFWWYSDYV 256          
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Match: A0A5E8B4M2_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B4M2_9ASCO)

HSP 1 Score: 52.4 bits (124), Expect = 4.260e-6
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   37 GRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTAFIFVPVTILWYYMD 198
            G  +  G+AT +DTL +QA+GA+N  LVG  F + TL+    F PV+ILW Y +
Sbjct:  218 GFAMIQGLATCLDTLCAQAYGAENYSLVGEYFQKCTLMVMACFAPVSILWLYAE 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70167.14677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ37_9PHAE3.370e-2057.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A368R9E7_SETIT9.870e-837.84Protein DETOXIFICATION n=3 Tax=Setaria TaxID=4554 ... [more]
A0A7S3JA02_9SPIT8.900e-742.37Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A8J5UXU1_9ASCO2.250e-643.33Uncharacterized protein n=1 Tax=[Candida] subhashi... [more]
W0TFM4_KLUMD2.250e-645.28Uncharacterized transporter C4B3.13 n=1 Tax=Kluyve... [more]
UPI001F5D5B0B3.080e-637.10protein DETOXIFICATION 16-like n=3 Tax=Lolium rigi... [more]
A0A5J9TZQ5_9POAL3.090e-640.28Protein DETOXIFICATION n=1 Tax=Eragrostis curvula ... [more]
A0A1E5W0C4_9POAL3.160e-632.43Protein DETOXIFICATION n=1 Tax=Dichanthelium oligo... [more]
A0A642UXZ3_DIURU4.250e-650.94Uncharacterized protein n=1 Tax=Diutina rugosa Tax... [more]
A0A5E8B4M2_9ASCO4.260e-646.30Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70167contigH-elongata_contig70167:2977..3198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FMM8
KEGG koko:K03327
KEGG TC2.A.66.1
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005618,GO:0005623,GO:0005911,GO:0008150,GO:0008152,GO:0009505,GO:0009506,GO:0009636,GO:0009664,GO:0009987,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0030054,GO:0030312,GO:0042221,GO:0044464,GO:0045229,GO:0050896,GO:0051716,GO:0055044,GO:0055114,GO:0070887,GO:0071554,GO:0071555,GO:0071669,GO:0071840,GO:0071944,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.4007845-CDS-H-elongata_contig70167:2976..31981622931100.4007845-CDS-H-elongata_contig70167:2976..3198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70167 2977..3198 +
1691679698.17189-CDS-H-elongata_contig70167:2976..31981691679698.17189-CDS-H-elongata_contig70167:2976..3198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70167 2977..3198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70167.14677.1prot_H-elongata_contig70167.14677.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70167 2977..3198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70167.14677.1

>prot_H-elongata_contig70167.14677.1 ID=prot_H-elongata_contig70167.14677.1|Name=mRNA_H-elongata_contig70167.14677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
SALIDLSLDRRRGRCIFYGMATGIDTLASQAFGAQNNRLVGVVFARGTLL
TAFIFVPVTILWYYMDIVVVTLGE
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mRNA from alignment at H-elongata_contig70167:2977..3198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70167.14677.1 ID=mRNA_H-elongata_contig70167.14677.1|Name=mRNA_H-elongata_contig70167.14677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig70167:2977..3198+ (Himanthalia elongata Himel1 dioecious)
TCCGCGCTCATTGATCTCTCCCTTGACCGCCGTCGCGGCAGGTGCATCTT TTACGGCATGGCGACGGGCATCGATACCTTGGCGTCGCAGGCGTTTGGGG CGCAAAATAATCGTCTCGTGGGCGTCGTGTTCGCCAGAGGAACCCTACTG ACGGCGTTTATCTTCGTGCCCGTGACCATCCTCTGGTACTACATGGATAT CGTGGTGGTGACACTCGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig70167:2977..3198+

>mRNA_H-elongata_contig70167.14677.1 ID=mRNA_H-elongata_contig70167.14677.1|Name=mRNA_H-elongata_contig70167.14677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig70167:2977..3198+ (Himanthalia elongata Himel1 dioecious)
TCCGCGCTCATTGATCTCTCCCTTGACCGCCGTCGCGGCAGGTGCATCTT
TTACGGCATGGCGACGGGCATCGATACCTTGGCGTCGCAGGCGTTTGGGG
CGCAAAATAATCGTCTCGTGGGCGTCGTGTTCGCCAGAGGAACCCTACTG
ACGGCGTTTATCTTCGTGCCCGTGACCATCCTCTGGTACTACATGGATAT
CGTGGTGGTGACACTCGGTGAGTCCGCGCTCATTGATCTCTCCCTTGACC
GCCGTCGCGGCAGGTGCATCTTTTACGGCATGGCGACGGGCATCGATACC
TTGGCGTCGCAGGCGTTTGGGGCGCAAAATAATCGTCTCGTGGGCGTCGT
GTTCGCCAGAGGAACCCTACTGACGGCGTTTATCTTCGTGCCCGTGACCA
TCCTCTGGTACTACATGGATATCGTGGTGGTGACACTCGGTGAG
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