mRNA_H-elongata_contig70150.14673.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70150.14673.1
Unique NamemRNA_H-elongata_contig70150.14673.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70150.14673.1 vs. uniprot
Match: A0A6H5JGI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGI2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.120e-32
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 WFVQARVQGTVIDAPADGVERRFTSFFSKVALKLDSKAFPGVAAVEWVRSKNCEELHGVELKLPLERALAFGMKTVSVEVSLHPRLDDGRPRR 279
            WFV AR+QG+++ APADGVERRFTSFFS VAL+LD KAFP VAAVEWVRS  CEELH VEL+LPL   L+ G+K +SV+  L  R+D+ RPRR
Sbjct:  360 WFVLARLQGSLVGAPADGVERRFTSFFSSVALELDGKAFPDVAAVEWVRSARCEELHCVELRLPLAGCLSRGLKEISVKAVLAARVDEDRPRR 452
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70150.14673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGI2_9PHAE1.120e-3267.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70150contigH-elongata_contig70150:429..1532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D8LDV7
KEGG koko:K11650
KEGG Pathwayko04714,ko05225,map04714,map05225
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009987,GO:0010224,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016514,GO:0019219,GO:0019222,GO:0022411,GO:0022622,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032947,GO:0032984,GO:0032986,GO:0032991,GO:0033554,GO:0034641,GO:0034728,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0046483,GO:0048096,GO:0048364,GO:0048518,GO:0048522,GO:0048580,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097458,GO:0099402,GO:1901360,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000024,GO:2000026,GO:2000112,GO:2000241,GO:2001141
EggNOG free text desc.SWIB/MDM2 domain
EggNOG OGsCOG5531@1,KOG2570@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003530.1
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.1381743-CDS-H-elongata_contig70150:428..5661622931100.1381743-CDS-H-elongata_contig70150:428..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70150 429..566 +
1691679698.0209508-CDS-H-elongata_contig70150:428..5661691679698.0209508-CDS-H-elongata_contig70150:428..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70150 429..566 +
1622931100.1525095-CDS-H-elongata_contig70150:1391..15321622931100.1525095-CDS-H-elongata_contig70150:1391..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70150 1392..1532 +
1691679698.0341532-CDS-H-elongata_contig70150:1391..15321691679698.0341532-CDS-H-elongata_contig70150:1391..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70150 1392..1532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70150.14673.1prot_H-elongata_contig70150.14673.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70150 429..1532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70150.14673.1

>prot_H-elongata_contig70150.14673.1 ID=prot_H-elongata_contig70150.14673.1|Name=mRNA_H-elongata_contig70150.14673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
WFVQARVQGTVIDAPADGVERRFTSFFSKVALKLDSKAFPGVAAVEWVRS
KNCEELHGVELKLPLERALAFGMKTVSVEVSLHPRLDDGRPRR
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mRNA from alignment at H-elongata_contig70150:429..1532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70150.14673.1 ID=mRNA_H-elongata_contig70150.14673.1|Name=mRNA_H-elongata_contig70150.14673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-elongata_contig70150:429..1532+ (Himanthalia elongata Himel1 dioecious)
TGGTTTGTGCAGGCCAGGGTGCAGGGGACGGTCATTGATGCTCCCGCGGA
CGGGGTGGAGCGTCGCTTCACGTCGTTCTTCTCGAAAGTGGCGTTGAAGC
TGGATTCGAAGGCGTTTCCCGGGGTGGCGGCCGTGGAGGTGAGTGGGAAA
GGGGTTCGTGATCTTATCATCGGTTCCTGCCGCCGTCGTTATCGTTATTG
TTAATAATAATAGTAATTCGCGGCGGGCTAGGCTAGTGGTGGCTACTGTA
CCTAGGGCCGTGTCGCGAAATCGTTGTACCGACAGTTCACCACCACTGGT
GTGCGTGTATGTGTATGTATGTATATATATATGTATGCTTGAGTGTGTAT
GTGCAGTAAGTAGGCACGAAAGACGAAGAGGAAAGTGTTACACACGCCTT
TACCGGCAGAGGCCCCGTACGTTACTTCGATTCGATTCGATGATGACGTT
ACCCCGGCGACGGTTGACCATTCTTGACCATTATTCGAAAAGCGATCGGC
TCCTTTTGTGCATCTTTGCTTTTAGTACACGTTACTTGTTTTATCTAGGG
GAGAGAGAGAGAGGGATGAAAGGAGAGATCTAAAGAACAGGACAAAAACA
ATTGAACCAGGCGTTTCCTCGTCTCCCCCTCCCCCCCCCCTCCCCCGCCC
GCCTCATTCACATTCCGCACAAAATATCCGTCTCACTGCTCGTCGATGTT
GCGCTAATGCTGGCGCTGGCGTTGCATCTTTTTGCTTTACTCTCGTTGGA
GCTCTGCAGCGTTCTTATTATAAAGACTAAGACTTAGGGTTAAGGGTGTA
TCGATCGTTAGAAAGCCCGACGTGCTCCGTCTCCCCTCCTTGTGTCTTTC
TCTATTTCTCTCCCTGTGCGTGTACATGTCGACATGTCGCCTCAAAACAC
GAAATGCGATTCGCGCACTCGTGGCATCGCCTCGGCAAAAAATCGCCGTT
GCACGAAATGCAGTGGGTGCGGTCGAAAAACTGCGAGGAGCTGCACGGCG
TGGAGCTGAAGCTGCCTCTGGAGCGCGCGCTGGCGTTTGGCATGAAGACG
GTGAGCGTGGAGGTCTCCCTGCACCCGAGACTGGATGACGGCAGGCCGCG
CAGG
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Coding sequence (CDS) from alignment at H-elongata_contig70150:429..1532+

>mRNA_H-elongata_contig70150.14673.1 ID=mRNA_H-elongata_contig70150.14673.1|Name=mRNA_H-elongata_contig70150.14673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig70150:429..1532+ (Himanthalia elongata Himel1 dioecious)
TGGTTTGTGCAGGCCAGGGTGCAGGGGACGGTCATTGATGCTCCCGCGGA
CGGGGTGGAGCGTCGCTTCACGTCGTTCTTCTCGAAAGTGGCGTTGAAGC
TGGATTCGAAGGCGTTTCCCGGGGTGGCGGCCGTGGAGTGGTTTGTGCAG
GCCAGGGTGCAGGGGACGGTCATTGATGCTCCCGCGGACGGGGTGGAGCG
TCGCTTCACGTCGTTCTTCTCGAAAGTGGCGTTGAAGCTGGATTCGAAGG
CGTTTCCCGGGGTGGCGGCCGTGGAGTGGGTGCGGTCGAAAAACTGCGAG
GAGCTGCACGGCGTGGAGCTGAAGCTGCCTCTGGAGCGCGCGCTGGCGTT
TGGCATGAAGACGGTGAGCGTGGAGGTCTCCCTGCACCCGAGACTGGATG
ACGGCAGGCCGCGCAGGTGGGTGCGGTCGAAAAACTGCGAGGAGCTGCAC
GGCGTGGAGCTGAAGCTGCCTCTGGAGCGCGCGCTGGCGTTTGGCATGAA
GACGGTGAGCGTGGAGGTCTCCCTGCACCCGAGACTGGATGACGGCAGGC
CGCGCAGG
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