mRNA_H-elongata_contig70047.14662.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70047.14662.1
Unique NamemRNA_H-elongata_contig70047.14662.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: D7FXC2_ECTSI (Peptidylprolyl isomerase domain and WD repeat containing 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC2_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 1.780e-122
Identity = 175/209 (83.73%), Postives = 188/209 (89.95%), Query Frame = 1
Query:   28 QAYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGRQGRVAVADADSPEIHVYLSDGSADAVGRFAGHGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPGAVSFKFKMDTDLYDLAKA 654
            + YLEALP+APMYERSYMHRDVV++  +TPCGTDFLVTAS DGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVS+DGQRLCTTSADKSIKFYDVVSFDMSHMIAL Y PTRA WIH RGR+GRVAVADADSP I VY+SDGS DAVG+F GH SPV+SL FNE A TVVS DR+GVLEYW AE+ GRPP GAV FKFKMDTDLYD+AKA
Sbjct:   72 KVYLEALPAAPMYERSYMHRDVVSHALMTPCGTDFLVTASLDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSRDGQRLCTTSADKSIKFYDVVSFDMSHMIALGYTPTRATWIHERGRKGRVAVADADSPAIRVYVSDGSTDAVGQFDGHSSPVLSLAFNEPAKTVVSADRSGVLEYWSAEDCGRPPAGAVKFKFKMDTDLYDMAKA 280          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: A0A5D6YCT6_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCT6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.010e-67
Identity = 118/211 (55.92%), Postives = 146/211 (69.19%), Query Frame = 1
Query:   31 AYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGRQG--RVAVADADSPEIHVYLSD--GSADAVGRFAGHGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPGAVSFKFKMDTDLYDLAK 651
            AY+  LPSA MYERSYMHRDVVT+V + P  T F+VTAS DGH+KFWKKM  GV FVKHY +H+  +H LAVS+DG RLC+T+AD SIKFYDV+ FD+ +M+++ +AP    WI  RG     RV VADAD+P + V+ ++  G+         H +PV  LGFN  AN V+SGD  G L YW AE Y  P   AV+FKFK DTDLY+LAK
Sbjct:   59 AYVANLPSAAMYERSYMHRDVVTHVVVAP-ETQFVVTASRDGHVKFWKKMSRGVAFVKHYKAHVGAVHGLAVSRDGLRLCSTAADASIKFYDVLGFDLVNMLSVAFAPGACCWISRRGAAAVPRVVVADADAPLLRVFSAEQAGAQPLHTLERAHTAPVTVLGFNAVANCVISGDARGHLAYWHAESYAPPGADAVAFKFKSDTDLYELAK 268          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: A0A3L6VLW7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VLW7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 4.400e-66
Identity = 113/214 (52.80%), Postives = 146/214 (68.22%), Query Frame = 1
Query:   28 QAYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGRQ-GRVAVADADSPEIHVYLSDGSADA-----VGRFAGHGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPGAVSFKFKMDTDLYDLAK 651
            +A L+ LP A MYE+SYMHRD VT+VA +   T FL+TAS+DGHIKFW+KM  G+EFVKHY +HL+ I  LAVS DG RL TTS D +IKF+D++ FDM +M+ L Y P++  WI+  G    ++AVA+ DS  + VY ++ + DA     V +   H +PV  LGFN  AN V+SGD  G+LEYW A+ Y  P   AV FK KMDTDLY+L K
Sbjct:   27 KALLDQLPCAEMYEKSYMHRDSVTHVAFSK-STQFLITASADGHIKFWRKMRTGIEFVKHYKAHLQAIVGLAVSDDGLRLATTSLDGTIKFFDILGFDMVNMLTLGYTPSQCCWIYQAGHVVPKIAVAEKDSHVLRVYHAEKAKDAALLHVVDKL--HSAPVSLLGFNAVANVVISGDTKGMLEYWSADTYSFPESPAVKFKSKMDTDLYELLK 237          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: A0A4D9CR11_9STRA (PPIase cyclophilin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR11_9STRA)

HSP 1 Score: 222 bits (566), Expect = 2.690e-65
Identity = 112/216 (51.85%), Postives = 148/216 (68.52%), Query Frame = 1
Query:   28 QAYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGR-QGRVAVADADSPEIHVYLSDGSADAVGRFAG-HGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRP------PPGAVSFKFKMDTDLYDLAK 651
            +A+L ALP+A MYE+SYMHRD VT  A TP  TDFL+TAS DGH+KFWKKMPEG+EFVKHYH+HL  I  LAVS DG RL TT ADK+IKFYDV++FD+++M+ + ++P+ A W+H  G   GR+AVADAD+P + +Y SDGS   +      H +PV +L F+      +S D  G+LEYW  E  G        P   V F+ K+D+DL+++ K
Sbjct:   71 EAFLAALPNADMYEKSYMHRDTVTQCAFTP-RTDFLITASEDGHVKFWKKMPEGLEFVKHYHAHLGSIRGLAVSGDGLRLATTGADKAIKFYDVLTFDLTYMLDVDFSPSHAVWVHRPGEAHGRLAVADADTPCLRIYRSDGSQAPIHTLPTMHAAPVTALAFSPSDALAISADVKGMLEYWSTELEGGDGEAYTFPRKKVFFRSKLDSDLFEMLK 285          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: A0A6H5L5N8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N8_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 3.830e-65
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 1
Query:   28 QAYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAP 354
            + YLEALP+APMYERSYMHRDVV++V +TPCGTDFLVTAS DGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVS+DGQRLCTTSADKSIKFYDVVSFDMSHMIAL Y P
Sbjct:   91 KVYLEALPAAPMYERSYMHRDVVSHVLMTPCGTDFLVTASLDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSRDGQRLCTTSADKSIKFYDVVSFDMSHMIALGYTP 199          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: G4ZVH8_PHYSP (PPIase cyclophilin-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4ZVH8_PHYSP)

HSP 1 Score: 218 bits (554), Expect = 5.830e-64
Identity = 107/211 (50.71%), Postives = 148/211 (70.14%), Query Frame = 1
Query:   31 AYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGR-QGRVAVADADSPEIHVYLSDGSADAVGRFAG--HGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPGAVS-FKFKMDTDLYDLAK 651
            AYL  LPSA MYERS+MHR  V++V + P  T F++TAS DGH+KFWKKM +G+EFVKHY +HL+ +H LAVS DG RLC+TSAD+SIKFYDV++FDM +M+++ + P    WI  +G  + +V VAD +SP + +Y ++ +A          H +PV  L FN  AN V+S D+ G++EYW A+ Y  P   +++ FKFK +TDLY+LAK
Sbjct:   22 AYLRNLPSAAMYERSFMHRAAVSHVLVAP-ETQFVITASVDGHVKFWKKMAKGIEFVKHYKAHLKEVHGLAVSADGLRLCSTSADRSIKFYDVLAFDMVNMLSVAFTPAECGWISAKGAIEPKVVVADKNSPALRIYTAESAASEPVHTISQLHAAPVTVLAFNPVANCVISADQKGIIEYWDADTYKFPKDKSLAKFKFKGETDLYELAK 231          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: H3G5V5_PHYRM (PPIase cyclophilin-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5V5_PHYRM)

HSP 1 Score: 217 bits (553), Expect = 7.870e-64
Identity = 106/211 (50.24%), Postives = 155/211 (73.46%), Query Frame = 1
Query:   31 AYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGR-QGRVAVADADSPEIHVYLSDGSA-DAVGRFAG-HGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPGAVS-FKFKMDTDLYDLAK 651
            AYL+ LP A MYERS+MHR VV++V + P  T F++TAS DGHIKFWKKM +G+EFVKHY +HL+ +H LAVS DG RLC+TSAD+SIKFYDV++FDM +M+++ + P   +W+  +G  + +V VAD +S  + +Y ++ +A + +   +G H +PV++L FN  AN V+S D+ G++EYW A+ Y  P   +V+ F+FK +TDL++LAK
Sbjct:   22 AYLDNLPGAAMYERSFMHRAVVSHVLVAP-ETQFVITASVDGHIKFWKKMAKGIEFVKHYKAHLKEVHGLAVSADGLRLCSTSADRSIKFYDVLAFDMVNMLSVAFTPGECSWVSAKGAIEPKVVVADRNSAALRIYTAESAANEPIHTISGLHAAPVMALAFNPVANCVISADQKGIIEYWDADTYKFPKDKSVAKFRFKGETDLFELAK 231          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: W2Q5U2_PHYPN (PPIase cyclophilin-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q5U2_PHYPN)

HSP 1 Score: 216 bits (550), Expect = 3.180e-63
Identity = 105/213 (49.30%), Postives = 148/213 (69.48%), Query Frame = 1
Query:   34 YLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGR-QGRVAVADADSPEIHVYLSDGSAD----AVGRFAGHGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPP--GAVSFKFKMDTDLYDLAK 651
            YL+ LPSA MYERS+MHR  V++V + P  T F++TAS DGH+KFWKKM +G+EFVKHY +HL+ +H LAVS DG RLC+TSAD+SIKFYDV++FDM +M+++ Y P    WI  +G    +V VAD +S  + +Y ++ +A      + +   H +PV ++ +N  AN V+S D+ G++EYW A+ Y  P    G V FKFK +TDL++LAK
Sbjct:   42 YLKNLPSAAMYERSFMHRATVSHVLVAP-ETQFIITASEDGHVKFWKKMAKGIEFVKHYKAHLKEVHGLAVSADGLRLCSTSADRSIKFYDVLAFDMVNMLSVAYTPAECCWISAKGAIDPKVVVADENSSALRIYTAESAASEPVYTISKL--HAAPVTAVAYNPVANCVISADQKGIIEYWDADTYKLPTKAKGVVKFKFKGETDLFELAK 251          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: A0A2P4Y9K0_9STRA (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y9K0_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.210e-63
Identity = 107/213 (50.23%), Postives = 146/213 (68.54%), Query Frame = 1
Query:   31 AYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRGR-QGRVAVADADSPEIHVYLSDGSADAVGRFAG--HGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPP--GAVSFKFKMDTDLYDLAKA 654
            AYL+ LPSA MYERS+MHR  V++V + P  T F+VTAS DGH+KFWKKM +G+EFVKHY +HL+ +  LAVS DG RLC+TSAD+SIKFYDV++FDM +M+++ + P    WI  +G    +V VAD  S  + +Y ++ SA+         H +PV  + +N  AN V+S D+ G++EYW A+ Y  P    G V FKFK +TDLY+LAK+
Sbjct:   39 AYLKNLPSAAMYERSFMHRATVSHVLVAP-ETQFIVTASVDGHVKFWKKMAKGIEFVKHYKAHLQDVRGLAVSADGLRLCSTSADRSIKFYDVLAFDMVNMLSVAFTPAECCWISAKGAIDPKVVVADQASSALRIYTAESSANEPVHTINQLHAAPVTVVAYNPVANCVISADQKGLIEYWDADTYKFPTKDKGVVKFKFKGETDLYELAKS 250          
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Match: A0A7J7Q2F9_9CHLO (PPIase cyclophilin-type domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q2F9_9CHLO)

HSP 1 Score: 216 bits (550), Expect = 7.400e-63
Identity = 108/212 (50.94%), Postives = 143/212 (67.45%), Query Frame = 1
Query:   28 QAYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASSDGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKFYDVVSFDMSHMIALKYAPTRAAWIHGRG-RQGRVAVADADSPEIHVY-LSDGSADAVGRFAG-HGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPGAVSFKFKMDTDLYDLAKA 654
            Q YL+ALPSA MYE+SYMHRD VT+V  TP  TDF++T S+DGH+KFWKK  +GVEFVKHY SH+  +  LA S DG    + S D+S+K YDV+ FDM  M+ L Y P  A WI  +G    ++A++D +SP IH+Y ++ GS + +   +  H SPV  + FN  ANTV+S D  G +EYW  E++ + P GAV F  KMDTDL+ LA+A
Sbjct:  103 QQYLDALPSAQMYEKSYMHRDTVTHVVATP--TDFIITGSADGHLKFWKKQEQGVEFVKHYRSHIGAVDGLAASHDGSLCVSISRDRSVKVYDVLGFDMIVMMKLPYTPGAAEWIFKKGDAASKLAISDLNSPAIHIYDVASGSEEPIASLSSLHASPVAVMRFNAAANTVISSDAKGFIEYWSCEDF-KHPAGAVKFTMKMDTDLFALARA 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70047.14662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXC2_ECTSI1.780e-12283.73Peptidylprolyl isomerase domain and WD repeat cont... [more]
A0A5D6YCT6_9STRA1.010e-6755.92PPIase cyclophilin-type domain-containing protein ... [more]
A0A3L6VLW7_9STRA4.400e-6652.80Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A4D9CR11_9STRA2.690e-6551.85PPIase cyclophilin-type domain-containing protein ... [more]
A0A6H5L5N8_9PHAE3.830e-6589.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
G4ZVH8_PHYSP5.830e-6450.71PPIase cyclophilin-type domain-containing protein ... [more]
H3G5V5_PHYRM7.870e-6450.24PPIase cyclophilin-type domain-containing protein ... [more]
W2Q5U2_PHYPN3.180e-6349.30PPIase cyclophilin-type domain-containing protein ... [more]
A0A2P4Y9K0_9STRA5.210e-6350.23Peptidylprolyl isomerase domain and WD repeat-cont... [more]
A0A7J7Q2F9_9CHLO7.400e-6350.94PPIase cyclophilin-type domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70047contigH-elongata_contig70047:469..2129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue5.8e-99
Seed eggNOG ortholog2880.D7FXC2
Preferred namePPWD1
KEGG koko:K12736,ko:K14569
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsKOG0882@1,KOG0882@2759
Ec32 orthologEc-04_000060.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-04_000060.2
Exons4
Model size654
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70047.14662.1prot_H-elongata_contig70047.14662.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70047 469..2129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931099.0267806-CDS-H-elongata_contig70047:468..5771622931099.0267806-CDS-H-elongata_contig70047:468..577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 469..577 -
1691679697.4552214-CDS-H-elongata_contig70047:468..5771691679697.4552214-CDS-H-elongata_contig70047:468..577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 469..577 -
1622931099.0409856-CDS-H-elongata_contig70047:1044..11991622931099.0409856-CDS-H-elongata_contig70047:1044..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 1045..1199 -
1691679697.4677665-CDS-H-elongata_contig70047:1044..11991691679697.4677665-CDS-H-elongata_contig70047:1044..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 1045..1199 -
1622931099.0539722-CDS-H-elongata_contig70047:1516..16631622931099.0539722-CDS-H-elongata_contig70047:1516..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 1517..1663 -
1691679697.4773312-CDS-H-elongata_contig70047:1516..16631691679697.4773312-CDS-H-elongata_contig70047:1516..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 1517..1663 -
1622931099.067409-CDS-H-elongata_contig70047:1886..21291622931099.067409-CDS-H-elongata_contig70047:1886..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 1887..2129 -
1691679697.487413-CDS-H-elongata_contig70047:1886..21291691679697.487413-CDS-H-elongata_contig70047:1886..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70047 1887..2129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70047.14662.1

>prot_H-elongata_contig70047.14662.1 ID=prot_H-elongata_contig70047.14662.1|Name=mRNA_H-elongata_contig70047.14662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MYYFHPCPPQAYLEALPSAPMYERSYMHRDVVTNVALTPCGTDFLVTASS
DGHIKFWKKMPEGVEFVKHYHSHLEPIHDLAVSQDGQRLCTTSADKSIKF
YDVVSFDMSHMIALKYAPTRAAWIHGRGRQGRVAVADADSPEIHVYLSDG
SADAVGRFAGHGSPVVSLGFNEQANTVVSGDRNGVLEYWGAEEYGRPPPG
AVSFKFKMDTDLYDLAKA
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mRNA from alignment at H-elongata_contig70047:469..2129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70047.14662.1 ID=mRNA_H-elongata_contig70047.14662.1|Name=mRNA_H-elongata_contig70047.14662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1661bp|location=Sequence derived from alignment at H-elongata_contig70047:469..2129- (Himanthalia elongata Himel1 dioecious)
ATGTACTATTTCCACCCTTGTCCACCCCAGGCCTATCTAGAAGCCCTACC CTCGGCGCCCATGTACGAGCGAAGCTACATGCACCGAGACGTGGTGACCA ACGTGGCCCTGACGCCCTGCGGCACCGACTTTCTCGTGACGGCGAGCTCG GACGGCCACATCAAGTTCTGGAAGAAAATGCCAGAGGGTGTGGAATTCGT CAAGCACTACCACTCGCACCTCGAACCTATCCACGACTTGGCAGTGAGTG ACACCGCACAACGAACAGTAACCAGGCATCCTCTTCCTCTCCCATGTCAT TGCACCGCCTGTCGCCAATATTTCCGCTCGGGTAACTCCCCCTCGTCGAT GGTGGCGATCAGGTGAGGTCACCGCTTGCAACCTTTACTATTGCTCTGGA GAGGAAAGGAAGGCCGTTCACACAATCGCTCGTCCGCCTGATTGGTGTGG AACTCCTCTCGTTCAGGTGTCTCAGGACGGCCAGCGGCTATGCACCACCT CTGCGGACAAGAGCATCAAGTTCTACGACGTCGTGTCCTTCGATATGAGC CACATGATCGCTCTCAAGTACGCGCCGACCCGTGCTGCCTGGATTCACGG GCGGGGACGACAGGTACGACGCCCCCCCCCCTCATTAAAAGAAGAATGCA CCGGGTGTGTACATTCCGTGTTTTTGTCGCCTTACACGATCGATTTTCTT CCATCTTATGAAGGATCTCATCGTATCTCAATACTACTGAAATAATTACA GTACACCGTACGTTCGACTTTAAAGATCCATGCTTTGCATCTCGCACCCC CCTGCGTGATCACCCCTCCCCCTCCCTAGCCTCTTACCTCTAGAGCTACA CGAACCACACCATATATTCCATGAAATCTATGGGTTTTTTTAAACGCTTG AGATCAATGCCGACTTGTGCCTGGCGGTAGGGGCGCGTTGCTGTGGCGGA CGCGGATTCTCCGGAGATCCATGTGTACCTGTCCGACGGTAGCGCCGATG CGGTCGGACGATTCGCCGGACACGGCTCGCCCGTCGTGTCTCTGGGCTTC AACGAGCAGGCTAATACCGTTGTCTCTGGAGACAGGTGTGTACGACTGCG GCCTGACGAACGCGCTTGTATGTGTATTGCAAGTTTTTGTTAAGGGTGTT TTTGTAGTCTTTCTAGTCTTTCTAGTATACATATTTTTTCTGTGTAATAT AAACGACCATCGTTGCTTCGCAGTCGCGACAAGCTTTTGGGAGCCGATCT CTCTCCCTCTCGAGCGTCCTCAACAAACTCTCTGCGTACGTCTCTCGAGC AACGCATTTACCCTCTTGCGGTTTAAAGTCGTGCGATCGAGAGAGGGTGG GGGATGCTGTCTTGCCAGAGTACCAGTGTGCCAGTAACCTGCCACGTTTT TTTGGGCCAGTAACGCTTCTGCCATCCGTTGATCATGCAGCCACGGGGAG TTGATGTGAAGGGTTGATATGATGTATTATGTACTGGATGTTAATATGTT CTTATTCTGCCGTGGCCTTGTTTTTTGTTTTGTTATGGTCCGCGTATCCA AGGAATGGCGTTTTAGAGTACTGGGGGGCCGAGGAGTACGGACGGCCTCC GCCCGGCGCGGTCAGCTTTAAGTTCAAGATGGACACAGACCTGTACGACC TTGCGAAAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig70047:469..2129-

>mRNA_H-elongata_contig70047.14662.1 ID=mRNA_H-elongata_contig70047.14662.1|Name=mRNA_H-elongata_contig70047.14662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig70047:469..2129- (Himanthalia elongata Himel1 dioecious)
ATGTACTATTTCCACCCTTGTCCACCCCAGGCCTATCTAGAAGCCCTACC
CTCGGCGCCCATGTACGAGCGAAGCTACATGCACCGAGACGTGGTGACCA
ACGTGGCCCTGACGCCCTGCGGCACCGACTTTCTCGTGACGGCGAGCTCG
GACGGCCACATCAAGTTCTGGAAGAAAATGCCAGAGGGTGTGGAATTCGT
CAAGCACTACCACTCGCACCTCGAACCTATCCACGACTTGGCAATGTACT
ATTTCCACCCTTGTCCACCCCAGGCCTATCTAGAAGCCCTACCCTCGGCG
CCCATGTACGAGCGAAGCTACATGCACCGAGACGTGGTGACCAACGTGGC
CCTGACGCCCTGCGGCACCGACTTTCTCGTGACGGCGAGCTCGGACGGCC
ACATCAAGTTCTGGAAGAAAATGCCAGAGGGTGTGGAATTCGTCAAGCAC
TACCACTCGCACCTCGAACCTATCCACGACTTGGCAGTGTCTCAGGACGG
CCAGCGGCTATGCACCACCTCTGCGGACAAGAGCATCAAGTTCTACGACG
TCGTGTCCTTCGATATGAGCCACATGATCGCTCTCAAGTACGCGCCGACC
CGTGCTGCCTGGATTCACGGGCGGGGACGACAGGTGTCTCAGGACGGCCA
GCGGCTATGCACCACCTCTGCGGACAAGAGCATCAAGTTCTACGACGTCG
TGTCCTTCGATATGAGCCACATGATCGCTCTCAAGTACGCGCCGACCCGT
GCTGCCTGGATTCACGGGCGGGGACGACAGGGGCGCGTTGCTGTGGCGGA
CGCGGATTCTCCGGAGATCCATGTGTACCTGTCCGACGGTAGCGCCGATG
CGGTCGGACGATTCGCCGGACACGGCTCGCCCGTCGTGTCTCTGGGCTTC
AACGAGCAGGCTAATACCGTTGTCTCTGGAGACAGGGGCGCGTTGCTGTG
GCGGACGCGGATTCTCCGGAGATCCATGTGTACCTGTCCGACGGTAGCGC
CGATGCGGTCGGACGATTCGCCGGACACGGCTCGCCCGTCGTGTCTCTGG
GCTTCAACGAGCAGGCTAATACCGTTGTCTCTGGAGACAGGAATGGCGTT
TTAGAGTACTGGGGGGCCGAGGAGTACGGACGGCCTCCGCCCGGCGCGGT
CAGCTTTAAGTTCAAGATGGACACAGACCTGTACGACCTTGCGAAAGCCG
AATGGCGTTTTAGAGTACTGGGGGGCCGAGGAGTACGGACGGCCTCCGCC
CGGCGCGGTCAGCTTTAAGTTCAAGATGGACACAGACCTGTACGACCTTG
CGAAAGCC
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