mRNA_H-elongata_contig70037.14661.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70037.14661.1
Unique NamemRNA_H-elongata_contig70037.14661.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70037.14661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70037contigH-elongata_contig70037:1748..2362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70037.14661.1prot_H-elongata_contig70037.14661.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70037 1801..2154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.9498298-UTR-H-elongata_contig70037:1747..18001622931098.9498298-UTR-H-elongata_contig70037:1747..1800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70037 1748..1800 +
1691679697.4176712-UTR-H-elongata_contig70037:1747..18001691679697.4176712-UTR-H-elongata_contig70037:1747..1800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70037 1748..1800 +
1622931098.9894469-UTR-H-elongata_contig70037:2154..23621622931098.9894469-UTR-H-elongata_contig70037:2154..2362Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70037 2155..2362 +
1691679697.440752-UTR-H-elongata_contig70037:2154..23621691679697.440752-UTR-H-elongata_contig70037:2154..2362Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70037 2155..2362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.9687755-CDS-H-elongata_contig70037:1800..21541622931098.9687755-CDS-H-elongata_contig70037:1800..2154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70037 1801..2154 +
1691679697.4282472-CDS-H-elongata_contig70037:1800..21541691679697.4282472-CDS-H-elongata_contig70037:1800..2154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70037 1801..2154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70037.14661.1

>prot_H-elongata_contig70037.14661.1 ID=prot_H-elongata_contig70037.14661.1|Name=mRNA_H-elongata_contig70037.14661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MRGANVITHTYITNETDNAKPFKETPTFLFFRWHVPGKKRIAQASSLVLP
YSSSATVRFTLSALLFFSCKTTVALGYKRHTNTAPAVHNRWPYSPTLDVT
RGGLGQLGTAARVPTLR*
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mRNA from alignment at H-elongata_contig70037:1748..2362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70037.14661.1 ID=mRNA_H-elongata_contig70037.14661.1|Name=mRNA_H-elongata_contig70037.14661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig70037:1748..2362+ (Himanthalia elongata Himel1 dioecious)
TCCTCGATATTATTAGCATGTCATCTTGTTTTTTAACATTTTGATTTGTC
TTTATGCGTGGTGCAAACGTCATTACACACACCTATATCACGAATGAGAC
TGACAATGCAAAACCATTCAAAGAGACACCAACGTTCTTATTCTTCCGTT
GGCACGTCCCGGGAAAAAAACGAATAGCCCAAGCCAGCAGTCTCGTCCTA
CCGTACTCCTCGTCCGCCACTGTACGATTCACGTTATCGGCACTGTTGTT
TTTTAGCTGCAAAACAACGGTTGCGCTTGGTTATAAAAGACACACCAACA
CAGCCCCAGCTGTGCATAACCGGTGGCCATACAGTCCCACACTAGATGTC
ACTCGGGGTGGCTTGGGACAGCTTGGTACAGCAGCACGTGTCCCTACTCT
CCGATAACCGGCCGGCACAGGGAAATCATCGACGGCGTTGGTGGTGTCTG
GTGGCACGTCGTGCACCTGCCCGAGCGTATTGTAGACGGTTGCTGGCAAA
ACCGCAGGCACGCTTTTTCCCTCGGCGATGTCGATAACCTCTGGCGCCAG
GGCTTTCGAAGGTGAACTGCCGCCAGCAGCGGGATCGGCACCGCTGGCAA
CCACCTCACGCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig70037:1748..2362+

>mRNA_H-elongata_contig70037.14661.1 ID=mRNA_H-elongata_contig70037.14661.1|Name=mRNA_H-elongata_contig70037.14661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig70037:1748..2362+ (Himanthalia elongata Himel1 dioecious)
ATGCGTGGTGCAAACGTCATTACACACACCTATATCACGAATGAGACTGA
CAATGCAAAACCATTCAAAGAGACACCAACGTTCTTATTCTTCCGTTGGC
ACGTCCCGGGAAAAAAACGAATAGCCCAAGCCAGCAGTCTCGTCCTACCG
TACTCCTCGTCCGCCACTGTACGATTCACGTTATCGGCACTGTTGTTTTT
TAGCTGCAAAACAACGGTTGCGCTTGGTTATAAAAGACACACCAACACAG
CCCCAGCTGTGCATAACCGGTGGCCATACAGTCCCACACTAGATGTCACT
CGGGGTGGCTTGGGACAGCTTGGTACAGCAGCACGTGTCCCTACTCTCCG
ATAAATGCGTGGTGCAAACGTCATTACACACACCTATATCACGAATGAGA
CTGACAATGCAAAACCATTCAAAGAGACACCAACGTTCTTATTCTTCCGT
TGGCACGTCCCGGGAAAAAAACGAATAGCCCAAGCCAGCAGTCTCGTCCT
ACCGTACTCCTCGTCCGCCACTGTACGATTCACGTTATCGGCACTGTTGT
TTTTTAGCTGCAAAACAACGGTTGCGCTTGGTTATAAAAGACACACCAAC
ACAGCCCCAGCTGTGCATAACCGGTGGCCATACAGTCCCACACTAGATGT
CACTCGGGGTGGCTTGGGACAGCTTGGTACAGCAGCACGTGTCCCTACTC
TCCGATAA
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