mRNA_H-elongata_contig70012.14653.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 3.810e-148 Identity = 271/456 (59.43%), Postives = 313/456 (68.64%), Query Frame = 1
Query: 25 DRIRTGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTST----------MPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLK-------------------VVELRPEAQVTLIDTDMELELDLPEEAREQLEEQGARDRGKTLRAHMDAKS-SSGSASPVQSLSPTSK----ATGAGSAXXXXXXXXXXATGKDIFAMSD-DGEDDSDLDLDDEQAK----KESAFDPSKHRLSMLKQLPEEPPLGENGVFTCQLRSPGGKHTRRFRFEDGVGVLLDFAEAQGGIPGHYRIVVPFPRRVLTRDEAALGMTLREAGLTSKQESVILERV 1275
D+IRT GI YKE LL V A GEGDK+LLPPSALE LS QDAV LGPMLFELT T P + G T +RTTHAGVLEFVADEGTIGLPRKV+ SLL G + + PS + + ++ E + + G + VRYVRLAKATFARVVPET+GLSQ+SELRAMLE N+RNHATLTVGD LSVWRRGKEF LK VVELRPE QVT+IDTDME+ELDLPE+AREQL+E+GA+DR KTLRAHM A + SS +SP QSLSP A G + TG + M D + +DDSDLD DDE++ K+ AFD KHRL+ +QLPEEPP E GVFTCQLR+ GK TRRFRF D +GVLLDF EAQGG+PG YR+V+PFPRRVLTRD+A+ G TL EAGLTSKQESVILER+
Sbjct: 71 DQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLL---GAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTG--LSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA) HSP 1 Score: 172 bits (437), Expect = 4.610e-44 Identity = 151/428 (35.28%), Postives = 215/428 (50.23%), Query Frame = 1
Query: 37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGD-DVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVT---SGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLKVVELRPEAQVTLIDTDMELELDLPEEA--REQLEEQGARDRGKTLRAHMDAKSSSGSASPVQSLSPTSKATGAGSAXXXXXXXXXXATGKDIFAMSDDGEDDSDLDLDDEQAKKESAFDPSKHRLSMLKQLPEEPPLGENGVFTCQLRSPGGKH-TRRFRFEDGVGVLLDFAEAQGGIPGH------YRIVVPFPRRVLTRDEAA---LGMTL-REAGLTSKQESVILE 1269
T GI Y L P GEGDK++LPPSALE L+ QDA++LGPMLF+L S +P EG+ + +R THAGVLEF A++G IGLP KV +SL+ + + G+ G E + A G+G +RV+YVRL K T+A+V P T L + EL+ MLE NL+NHATL+ GD L VW RG+ F L+V L P VT+IDTD+ +++++PEE RE+ E + + D G + G P +S + ++ G G + +++ +++ E+ K+ A + L +L EP G +R P G +RRF + F EA H YR+V FPRRV T E A +G L EAG K+E+++ E
Sbjct: 71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQL-SLLPA--EGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLVAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWK----VRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTEREREESRLSADAGGVKGQVV------GGGGPPPHVSQSCESRG-------------QEAGMEEPSVNSGAKEE-------ERRKRMMA--------TQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDPLDMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAG---KRETLMYE 454
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A662YG13_9STRA (UBX domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG13_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.590e-30 Identity = 100/241 (41.49%), Postives = 130/241 (53.94%), Query Frame = 1
Query: 37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLP-------EEAREQLEEQGAR 732
TGGI Y + L PV G+GDK+ LP SALE L+ Q+A+ LG FEL+ P E R THAGVLEFVADEGT+GLP KV SL + Q DN IRVR+VRL K FA + P G + + + +LE++L+ H TLTVGD L V R G+E F + V EL+PE V +++TD+E+ + LP +EA +QLEE+ AR
Sbjct: 73 TGGIKYLQQLRPVPTSGDGDKITLPVSALEELNPQNALELGVFTFELSYDEPEATES-------WQRKTHAGVLEFVADEGTVGLPPKVAASLFQNAKQ--------------LPDN-----------------IRVRFVRLEKGKFASLQPRGDGFGERQIDFKHLLERSLKAHTTLTVGDVLFV-RHGRETFEVVVAELKPEEAVNILNTDLEVAI-LPSESAARAKEAEKQLEEEAAR 273
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A7S3XVE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK) HSP 1 Score: 126 bits (317), Expect = 1.840e-30 Identity = 70/148 (47.30%), Postives = 93/148 (62.84%), Query Frame = 1
Query: 229 ASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPS-EPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLKVVELRPEAQVTLIDTD 669
A+ TTH GVLEF A+EG +GLP KV+ SL + Q + P SV G ++++Y+RL KATFA++ PE GLSQ+ E+RA+LE N+RNHATL++GD+L VW RGK F +V+ELRP A T+IDTD
Sbjct: 11 AAGTTHCGVLEFTAEEGCVGLPPKVLASLGIAPEQDNTQHQGVAPSSV---------------------GQVQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLELRPAAACTVIDTD 137
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: K3WWI9_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWI9_GLOUD) HSP 1 Score: 132 bits (332), Expect = 2.520e-29 Identity = 93/224 (41.52%), Postives = 123/224 (54.91%), Query Frame = 1
Query: 37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLPEEA 702
TGGI Y + L PV A +GDK+ LP SALE L+ Q+A LG FEL P+ T +R THAGVLEFVA+EGT+GLP KV SL G S P ++ +V+Y+RL K FA + P +G + + + +LE++L+ H TLTVGD L V R GKE F + V EL+PEA V +++TD+E+ L LP EA
Sbjct: 73 TGGIKYLQRLRPVPAVTDGDKITLPVSALEELNPQNAHELGVFTFELLYEDPL---------TQTTRKTHAGVLEFVAEEGTVGLPPKVAASLFRNLGGSSNSVGQVPEAI------------------------QVKYIRLEKGKFASLQPRGVGFGEREIDFKKILERSLKAHTTLTVGDVLFV-RHGKETFEVLVAELQPEAAVNILNTDLEVAL-LPSEA 261
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A329RIV7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RIV7_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.160e-29 Identity = 95/241 (39.42%), Postives = 130/241 (53.94%), Query Frame = 1
Query: 37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLP-------EEAREQLEEQGAR 732
TGGI Y + L PV G+GDK+ LP SALE L Q+A+ LG FEL+ + D G +T R THAGVLEFVA+EGT+GLP KV SL + Q G I+VR+VRL K FA + P G + + MLE++L+ H TLT GD L V R G+E F + V EL+PE + +++TD+E+++ +P +EA ++LEE+ AR
Sbjct: 73 TGGIKYLQQLRPVPTKGDGDKITLPVSALEELDPQNALELGVFTFELS----FDEDHHDGGASTLKRQTHAGVLEFVAEEGTVGLPPKVATSLFRYTKQL-------------------------------PGSIKVRFVRLEKGRFATLQPRGEGFGDRQIDFKHMLERSLKTHTTLTEGDVLFV-RHGRETFEVLVAELKPERAINILNTDLEVDM-IPCEAVVKKKEAEKRLEEEAAR 276
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A484E4L3_BRELC (UBA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4L3_BRELC) HSP 1 Score: 130 bits (328), Expect = 6.820e-29 Identity = 103/256 (40.23%), Postives = 143/256 (55.86%), Query Frame = 1
Query: 1 QARRQEEADRIRTGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTAS--RTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLPEEAREQLEEQGARDRGKTLRA 756
Q +++ EA R+ TGGI Y E L P +GDK+ LP SALE L+ Q+A LG + FEL+ +P + D GV T S R THAGVLEF A EGT+GLP KV SL S P+ + +++VRYVRL K FAR+ P+ G +L+ +LEQ+L+ H TLT GD + V R G+E F++ V +L+PE VT+++TD+E++L +P EA L+E R + RA
Sbjct: 62 QEQQELEAQRL-TGGIQYLEQLEPFPTTTDGDKITLPVSALEMLNPQNAFELGVLTFELS--LP---KDDATGVETKSPQRFTHAGVLEFTAREGTVGLPPKVTASLF----------QSRPNLLHC--------------------LVQVRYVRLEKGKFARLQPQGEGFKDRQLDLKPLLEQSLQTHTTLTEGDVVFV-RHGRETFNVIVTKLKPEKAVTILNTDLEVDL-IPCEAVAALQEDEKRIEEEAARA 279
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A3R7KPJ2_9STRA (UBX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KPJ2_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.940e-28 Identity = 97/240 (40.42%), Postives = 133/240 (55.42%), Query Frame = 1
Query: 37 TGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMS-ELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLPE------EAREQLEEQGAR 732
TGGI Y + L+PV G+GDK+ LP SALE L+ Q+A+ LG FEL+ Q +G++ + THAGVLEFVADEGT+GLP KV SL + H ++ IRVR+VRL K FAR+ G + + MLE++LR+H TL VGD L V R G+E F + V EL+PEA V +++TD+E+++ E EA ++LEE+ AR
Sbjct: 73 TGGIKYLQQLIPVPTTGDGDKITLPVSALEELNPQNALELGVFTFELSYEEHGQ-QGENERIL-----THAGVLEFVADEGTVGLPPKVAASLFQQT----------EHLPES---------------------IRVRFVRLEKGKFARLQARGDGFGDRQIDFKHMLERSLRSHTTLMVGDVLFV-RHGRETFEVVVAELKPEAAVNILNTDLEVDIVPSEAATQAKEAEKRLEEEAAR 274
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: A0A3M6VL54_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL54_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.520e-28 Identity = 99/247 (40.08%), Postives = 135/247 (54.66%), Query Frame = 1
Query: 19 EADRIRTGGIDYKEPLLPVAAGGEGDKVLLPPSALEALSSQDAVSLGPMLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGL-SQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKE-FHLKVVELRPEAQVTLIDTDMELELDLP-------EEAREQLEEQGAR 732
E RI TGGI Y + L PV +GDK+ LP SALE L+ Q+A+ LG FEL+ Q G TT R THAGVLEFVADEGT+GLP KV SL + E P G I+VR+VRL K TFA + P+ G + + + MLE++L+ H TLT GD L + R GKE F + V L+PE + +++TD+E+++ +P +EA +Q++E+ AR
Sbjct: 68 EEQRI-TGGIKYLQQLRPVPTTEDGDKITLPVSALEELNPQNALELGVFTFELS--FEDQYVTQTSGETTIKRQTHAGVLEFVADEGTVGLPPKVAASLF----KYATEIP---------------------------GSIQVRFVRLEKGTFASLQPKGNGFCDRQIDFKHMLERSLKTHTTLTEGDVLFI-RHGKETFEVLVSGLKPERAINILNTDLEVDM-IPCEAVIKAKEAEKQMDEEAAR 278
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Match: W7T6G4_9STRA (Ubiquitin fusion degradaton n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6G4_9STRA) HSP 1 Score: 126 bits (316), Expect = 2.580e-28 Identity = 129/387 (33.33%), Postives = 180/387 (46.51%), Query Frame = 1
Query: 163 MLFELTSTMPVQLEGD-DVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSLLVTSGQSGAEGPSEPHSVDAARDNGWEAFGRKGAGILGDGIIRVRYVRLAKATFARVVPETIGLSQMSELRAMLEQNLRNHATLTVGDRLSVWRRGKEFHLKVVELRPEAQVTLIDTDMELELDLPEEA--REQLEEQGARDRGKTLRAHMDAKSSSGSASPVQSLSPTSKATGAGSAXXXXXXXXXXATGKDIFAMSDDGEDDSDLDLDDEQAKKESAFDPSKHRLSM----LKQLPEEPPLGENGVFTCQLRSPGGKH-TRRFRFEDGVGVLLDFAEAQGGIPGH------YRIVVPFPRRVLTRDEAA---LGMTL-REAGLTSKQESVILE 1269
MLF+L S +P EG+ + +R THAGVLEF A++G IGLP KV +SL ++ +G S G E R+ + +RV+YVRL K T+A+V P T L + EL+ MLE NL+NHATL+ GD L VW RG+ F L+V+ L P VT+IDTD+ +++++PEE RE++E++ + D G + G P S S S+ AG E++ S + R SM L +L EP G +R P G +RRF + F EA H YR+V FPRRV T E A +G L EAG K+E+++ E
Sbjct: 1 MLFQL-SLLPA--EGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDG-SRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTERERVEKRLSTDAGGVKGQVVGG----GGPPPRVSQSCESRGQEAGM----------------------------------EESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAG---KRETLMYE 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70012.14653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70012.14653.1 >prot_H-elongata_contig70012.14653.1 ID=prot_H-elongata_contig70012.14653.1|Name=mRNA_H-elongata_contig70012.14653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=372bp MLFELTSTMPVQLEGDDVGVTTASRTTHAGVLEFVADEGTIGLPRKVMQSback to top mRNA from alignment at H-elongata_contig70012:1061..3169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70012.14653.1 ID=mRNA_H-elongata_contig70012.14653.1|Name=mRNA_H-elongata_contig70012.14653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2109bp|location=Sequence derived from alignment at H-elongata_contig70012:1061..3169+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70012:1061..3169+ >mRNA_H-elongata_contig70012.14653.1 ID=mRNA_H-elongata_contig70012.14653.1|Name=mRNA_H-elongata_contig70012.14653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2232bp|location=Sequence derived from alignment at H-elongata_contig70012:1061..3169+ (Himanthalia elongata Himel1 dioecious)back to top |