mRNA_H-elongata_contig69972.14644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69972.14644.1
Unique NamemRNA_H-elongata_contig69972.14644.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: D7FZ17_ECTSI (Domain repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ17_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.600e-82
Identity = 131/186 (70.43%), Postives = 154/186 (82.80%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDD-EDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G NDWGQLG+GD +DRGDDP  MG+ L  VDLGT+PSG G+AVA+A++TGQQFTCVLVEGG VKCFGRNDEGQCGRGNLD ++G++  EDMGD+LPYV+LGTGVE++S+SSGT++TCA LL GG+KCWGGNSYGG+GVGDS N GD+   M    + VDLGTGE G  V  G RH CAIL GGSVK
Sbjct:  112 GRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVNLGTGVEMISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGSVK 297          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A6H5L5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B3_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 2.810e-79
Identity = 129/186 (69.35%), Postives = 152/186 (81.72%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDD-EDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G NDWGQLG+GD +DRGDDP  MG+ L  VDLGT+PSG G+AVA+A++TGQQFTCVLVEGG VKCFGRNDEGQCGRGNLD ++G++  EDMGD+LPYVDLG GV+ +S+SSGT++TCA LL GG+KCWGGNSYGG+GVGDS N GD+   M    + VDLGTGE G  V  G RH CAIL GG+VK
Sbjct:  150 GRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVQAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNLQEVDLGTGETGYYVAYGLRHACAILMGGNVK 335          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A3M1N8Z3_9BACT (T9SS C-terminal target domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1N8Z3_9BACT)

HSP 1 Score: 149 bits (375), Expect = 6.280e-40
Identity = 84/180 (46.67%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   16 GQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            GQLG GD+ DRGD P  MGD L  VDLGT  + T      A++ G   +C L + G+VKC+G+N  GQ G G++++  G    +MGD+LP VDLGTG    +I++G S TCA L DG +KCWG   YG +G GD+ +RGDDP  M      +DLG G    ++ +G  H CA+L  GSVK
Sbjct:    2 GQLGLGDTSDRGDAPGEMGDNLPAVDLGTGRTPT------ALALGNSHSCALFDDGAVKCWGKNRRGQLGLGDINDR-GDAPGEMGDNLPTVDLGTGRTATAIAAGESFTCALLDDGSVKCWGEGDYGQLGQGDTAHRGDDPGEMGDNLPPIDLGAGRTAIAIAAGSFHACALLDDGSVK 174          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A017SY21_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017SY21_9DELT)

HSP 1 Score: 152 bits (384), Expect = 1.150e-39
Identity = 90/185 (48.65%), Postives = 113/185 (61.08%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G ND GQLG GD++ RG D   MGD+L  V LGT  S      AIAVS     TCVL+ GGSVKC+G N  GQ G G+   S GT   DMG++LP V+LGTG     +S+G+  TCA L DG +KCWG N YG +G+GD+ NRG   + M      V+LGTG+    V +G RH CA+L   ++K
Sbjct:  409 GNNDSGQLGLGDTLSRGGDTAQMGDSLPAVALGTGQS------AIAVSAAGGHTCVLLNGGSVKCWGYNTYGQLGLGSP-ASRGTSPSDMGNNLPAVNLGTGKTATLVSAGSQYTCAVLNDGSVKCWGNNDYGQLGLGDTFNRGTGSTSMGDNLPVVNLGTGKTATLVSAGGRHTCAVLNDSTIK 586          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A150PNJ9_SORCE (Uncharacterized protein n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PNJ9_SORCE)

HSP 1 Score: 152 bits (385), Expect = 1.720e-39
Identity = 86/181 (47.51%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   13 WGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            WGQLG GD+VDRG  P+ MGD L EVDLGT  +      A A++ G   TC +++   VKC+G N EGQ G G++D   G    +MGD LP VDLGTG    +I+ G+  TC  L +  IKCWG N +  +G+GD+D RGD PS M      VDLGTG   K++ +G RH CAIL    +K
Sbjct:  187 WGQLGLGDTVDRGSGPNEMGDNLPEVDLGTGRT------AKAIAAGVSHTCAILDNDQVKCWGDNIEGQLGLGDMDPR-GDGPNEMGDDLPEVDLGTGRTAKAIAVGSGHTCVILDNDRIKCWGSNGFSELGLGDTDRRGDGPSEMGDDLPEVDLGTGRTAKAIAAGARHTCAILDNDQLK 360          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A7S0U564_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U564_HEMAN)

HSP 1 Score: 139 bits (350), Expect = 1.820e-38
Identity = 84/185 (45.41%), Postives = 111/185 (60.00%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G+N +GQLG GD+  RG   D MGDAL  VDLG    G G  V ++VS+G Q +C L+E G VKC+G+ND GQ G G++    G   + MGD+LP+VD G    V+ + +G S +C  L D  +KCWG N +G +GVGD  NRGD+   +  T   V LG      SV++G  H CA+L   SVK
Sbjct:    3 GDNSYGQLGVGDADQRGGSSDGMGDALPFVDLG----GGGMGV-LSVSSGHQHSCALLESGGVKCWGQNDLGQLGLGDV-VGRGQTGQTMGDALPFVDFGGDRRVLWLDAGHSHSCVVLDDHSVKCWGYNRFGQLGVGDIFNRGDEAGEVSGTGTAVKLGGNRTAVSVFTGHFHSCAVLDDASVK 181          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A2E7J5D0_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7J5D0_9EURY)

HSP 1 Score: 146 bits (368), Expect = 3.570e-37
Identity = 82/185 (44.32%), Postives = 107/185 (57.84%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G N++GQLG G++    D P+ MG  L  V LG++ +       + VS G +  C L++ GSVKC+GRN  G  G+G    +IG + E+MGD LP +DLG G     ISSG+  TCA L DG +KCWG    G +G+G+S N GD  + M      VDLGTG    S+ SG  H CAIL  G VK
Sbjct:  137 GYNNYGQLGHGNTSTASDGPNEMGANLAFVPLGSNRTS------LQVSVGAEHACALLDNGSVKCWGRNQNGVTGQGTTSGNIGDESEEMGDDLPVIDLGAGRTATEISSGSYHTCAILEDGSVKCWGNGGSGRLGIGNSSNMGDGANEMGDYLPAVDLGTGRTAISISSGNSHTCAILDSGVVK 315          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A2J7ZMN6_9CHLO (RCC1 and BTB domain-containing protein 2 n=2 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZMN6_9CHLO)

HSP 1 Score: 142 bits (359), Expect = 4.300e-37
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = 1
Query:   16 GQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            GQLG G S + GDDP  MGD L  VDLGT  +      A+A++ G + TC +++ G +KC+G N + Q G G+  +S G+   +MGD+LPYV+LG G+   SI++G + TCA L +G +KCWGGN+YG +G+GD+ +RG   + M      VDLGTG+  K+V +G    CA+    ++K
Sbjct:  225 GQLGLGHSDNIGDDPGEMGDDLPAVDLGTGRT------AVALAAGDRHTCAILDDGGIKCWGNNGDYQLGLGDS-KSRGSTSTNMGDALPYVNLGQGLTATSIAAGAAHTCAVLDNGALKCWGGNTYGQLGLGDTKSRGGSAADMGDALPNVDLGTGQQAKTVTAGLHSTCAVTASSNLK 397          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A4Q5ZUK8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5ZUK8_9DELT)

HSP 1 Score: 142 bits (358), Expect = 5.650e-37
Identity = 87/186 (46.77%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGG-IKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G+ND GQLG GD++ RGD    MGDAL  VDLG     T      AV+ G   TC L+EGG  +C+G N  G  G G+ + S G    +MGD+LP+VDLGTG  + ++S+G   TCA LLDGG +KCWG N  G +G GD+  RG  P  M      VDLG G V  ++ S   H CA+L  G VK
Sbjct:   63 GQNDRGQLGLGDTISRGDKTGQMGDALPAVDLGAGIEAT------AVAAGFWHTCALLEGGKARCWGENIYGTLGTGD-NVSHGAKPGEMGDALPFVDLGTGATIKALSAGREFTCA-LLDGGKVKCWGNNEMGQLGQGDTVTRGSKPGEMGDALPAVDLGAGAVAVAISSQSFHTCALLADGRVK 240          
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Match: A0A4V5PJ66_9DELT (Uncharacterized protein n=2 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4V5PJ66_9DELT)

HSP 1 Score: 142 bits (359), Expect = 6.990e-37
Identity = 82/185 (44.32%), Postives = 111/185 (60.00%), Query Frame = 1
Query:    1 GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTGQQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLGTGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGMLPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK 555
            G N  GQLG GD   RG   D MGDAL  VDLG+        +AIA++ G   TC L+ GG+VKC+G N  GQ G G+  E  G    +MGD+LP +DLG G    +I++G +  CA L  G IKCWG N  G +G+GD+++RGD P  M      V+LG+G+   ++ +G  H+CA+L  G+VK
Sbjct:  165 GINSEGQLGLGDMESRGHAADEMGDALPNVDLGSGK------IAIAIAAGYSHTCALLAGGAVKCWGSNYSGQLGLGDQ-EDRGDAPGEMGDALPAIDLGPGQSATAIAAGAAHVCALLAGGAIKCWGENHLGQLGLGDNNDRGDQPGEMGSALPTVNLGSGQKAAAITAGAYHNCALLMDGAVK 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69972.14644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ17_ECTSI1.600e-8270.43Domain repeat protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L5B3_9PHAE2.810e-7969.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M1N8Z3_9BACT6.280e-4046.67T9SS C-terminal target domain-containing protein (... [more]
A0A017SY21_9DELT1.150e-3948.65Uncharacterized protein n=2 Tax=Chondromyces apicu... [more]
A0A150PNJ9_SORCE1.720e-3947.51Uncharacterized protein n=2 Tax=Sorangium cellulos... [more]
A0A7S0U564_HEMAN1.820e-3845.41Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2E7J5D0_9EURY3.570e-3744.32Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A2J7ZMN6_9CHLO4.300e-3743.33RCC1 and BTB domain-containing protein 2 n=2 Tax=T... [more]
A0A4Q5ZUK8_9DELT5.650e-3746.77Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A4V5PJ66_9DELT6.990e-3744.32Uncharacterized protein n=2 Tax=Polyangium aurulen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69972contigH-elongata_contig69972:437..3188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.7
Seed ortholog evalue4e-69
Seed eggNOG ortholog2880.D7FZ17
Preferred nameRCCD1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-20_001190.1
Exons5
Model size555
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69972.14644.1prot_H-elongata_contig69972.14644.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69972 437..3188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.160934-CDS-H-elongata_contig69972:436..5231622931097.160934-CDS-H-elongata_contig69972:436..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 437..523 -
1691679696.6470828-CDS-H-elongata_contig69972:436..5231691679696.6470828-CDS-H-elongata_contig69972:436..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 437..523 -
1622931097.1768389-CDS-H-elongata_contig69972:1118..11461622931097.1768389-CDS-H-elongata_contig69972:1118..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 1119..1146 -
1691679696.6573064-CDS-H-elongata_contig69972:1118..11461691679696.6573064-CDS-H-elongata_contig69972:1118..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 1119..1146 -
1622931097.1962762-CDS-H-elongata_contig69972:1435..15001622931097.1962762-CDS-H-elongata_contig69972:1435..1500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 1436..1500 -
1691679696.6703956-CDS-H-elongata_contig69972:1435..15001691679696.6703956-CDS-H-elongata_contig69972:1435..1500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 1436..1500 -
1622931097.210713-CDS-H-elongata_contig69972:2109..22921622931097.210713-CDS-H-elongata_contig69972:2109..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 2110..2292 -
1691679696.6785414-CDS-H-elongata_contig69972:2109..22921691679696.6785414-CDS-H-elongata_contig69972:2109..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 2110..2292 -
1622931097.2276745-CDS-H-elongata_contig69972:2996..31881622931097.2276745-CDS-H-elongata_contig69972:2996..3188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 2997..3188 -
1691679696.6864283-CDS-H-elongata_contig69972:2996..31881691679696.6864283-CDS-H-elongata_contig69972:2996..3188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69972 2997..3188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69972.14644.1

>prot_H-elongata_contig69972.14644.1 ID=prot_H-elongata_contig69972.14644.1|Name=mRNA_H-elongata_contig69972.14644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
GENDWGQLGQGDSVDRGDDPDLMGDALLEVDLGTSPSGTGSAVAIAVSTG
QQFTCVLVEGGSVKCFGRNDEGQCGRGNLDESIGTDDEDMGDSLPYVDLG
TGVEVVSISSGTSTTCATLLDGGIKCWGGNSYGGVGVGDSDNRGDDPSGM
LPTYRGVDLGTGEVGKSVYSGQRHHCAILTGGSVK
back to top

mRNA from alignment at H-elongata_contig69972:437..3188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69972.14644.1 ID=mRNA_H-elongata_contig69972.14644.1|Name=mRNA_H-elongata_contig69972.14644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2752bp|location=Sequence derived from alignment at H-elongata_contig69972:437..3188- (Himanthalia elongata Himel1 dioecious)
GGCGAAAACGACTGGGGACAGCTCGGGCAGGGCGACTCCGTGGATCGCGG AGACGACCCTGACCTCATGGGGGACGCTCTTCTGGAAGTCGACCTGGGGA CATCTCCCTCGGGGACCGGTTCCGCCGTGGCGATCGCCGTCAGCACGGGG CAGCAGTTCACCTGCGTGCTTGTCGAGGGTGGAAGCGTTAAGGTACGCCG CGTGCGCAGCATGCGTGCAGAGGCACCGTTGTACCTTGCGCCCAAAAGGG TATCACACAAAAAAAACGGGTACGGTGTGCGGCAAGGCGGCAGTAAGCTT CGACGTTTTCAAAACGTGGCAGAAACGGAAGAAGTCACCAAAAAACGGGA AAAAAACAGTATGTTCGTGAGACTAGGAACATATTATGAGATGAGGAATG GGGAGACTTTTGAACCAAGTGTGTTTCTTCTCTATGATCGTGAGATTTAA AACGGATCGTAAAATAAGCGATGGGGGATTTTTTATTCCTTATCTCATAA TCCGTTCCCAGTCTCACGAACATACTGTTAAAAGTAAATAAAAAATATAT TTATGACTTTGGGAAGAGGAACTCCCAGGACCTTATCCTTCCCCTATATA ATATACCAGGTATACATTAGCATACATGAATCCTCTGCCCCCCCCTGCCC TAGATAACGCCCCCGGGTGTTCCAGTTTCCCGAGGGAGCTTGATCATGGT ATCACGTTTGAGTACCTCTTCCCCATTTTCCTCTTTCCTCGAGAAATAAA TATATACTGCGTTTTGTCTCGCGGGTCCTTAATGTTTTTTTTTTAATTAT TATTATTATTATTATTATGTGTGTGTGTGGATAATATGTGTTTTTGTTGT TGTTGTTTTTCTGAAAACAAAAACAAATATGGTACTCGACATGAAGTGCT TCGGACGAAACGACGAGGGCCAGTGCGGAAGGGGCAACCTCGACGAGTCC ATCGGAACGGACGATGAGGACATGGGGGACTCGCTGCCCTACGTGGATCT GGGCACCGGTGTCGAAGTCGTGTCGATATCTTCGGGAACGTCGACGACCT GCGCGACCCTCTTGGATGGCGGGATCAAGGTATTATTGTTTGTGTTGTCA TCCCCCATTTTTATTATTGGTTGTGTTGTCATCCCCCATTTCATTTTTAT TATTTATTCTGGATGTCAGACGTGTACACTTCAAGGCGTTTTTTTTGTGT TTCTCTCTTTTTTTTTCAGTGATTTAGCGTACAAGCAGACGAAGGAACCG GGCCACTCGGCGTGTAATGTTTGAGCAGCTGTAGCTCGGCATGTGGGGTT TTATTGATACGATGGCGTTTTTAATCAAGACATGGCACTTTTTTTCCCTG CATTCTTGCATCGGGGGGAGGAGGGAGCTTCCAACTTCATTGGCTTCCGC CACAGTAACGCCTCTGGCGAAGTTAGGAAAAAATACATCCGACTCAAACG CTCGACGTATCTTTTGCGTTTGTTTTTTCGTCTTCTACCCCTACCCCTCT CCATCAGCTGCGAGCCGTTCGTTCCAATTAACAACCAAAACGAAGATGGA AATACTTGATGCGTCCCGCCAGTGGCGTGTTGCCTTCCGACTGATCTCTT GATTCCGCCGCCTCTTCGTGTTTTATTTATTATCGCTTTGCCCCCTTTTT CTCTACGTCGGCGTTTGCGCGGTTTTGATGGTGTACAGTGCTGGGGCGGC AATTCGTACGGTGGCGTTGGTGTGGGAGACTCCGATAACCGCGGTGATGA CCCGTCCGAAATGGGGGACAGCCTTCCTGAGGCGAGAACAGGGAAATAGA AATTGCATAATCCAGACGTCAACGGTTTATTATCCCCTTTACCCCTAAGG CCTCCTTGTTCAAAGGGTTAGTAGAGTGCACCATCGCCAGCACTCCTTTT CGGGGGGGACCGGGGGCAGGATAAAGTTCTGGGATGTTGCCCACATATAG AGGCGTTTTATACCCGGGATGGGGCAGGATAAAGTTCTGGGATGTTGCCC ACATATAGAGGCGTTTTATACCCGGGATGGGGCAGGAGAAAGTTCTGGGA TGTTGCCCACATATAGAGGCGTTTTATACCCGGGATGGGGCAGGAGAAAG TTCTGGGATGTTGCCCACAGAGAGGGGAGTTTTATGTCAGGGATGGGGGG AGGGTACATATGGGGCAGGAGAAAGTTCTGGGATTTTGCCCATAGAGAGG GGAGTTTTATGCCCGGGGTCCACGATTTTGATATTGCGCGGCGAGAAAAG GAGCAGCGACGCCGCTTCTCTTTTTTCCTTTTTTTCTTTTGAAGGTGGCG GTTTTGATCAGCACTACGATGCATGTTGTATATGGAGATAGCAGAGCTGT TTAGTGTTTCCTTGTATATTAAACATTCCTCGGGTGACACGAAGCTGACT CAAGATCTCGGCTCATTTTTTTTTTGTACGAACCTCTTTTTCAACAGACA TGGCCATAGACGGACGGTTAACACAAGGGAAAGCTCCGTTTCTAAAAGTG GAATAAGTTTCATGCCGTCCACCTGTGTATAATAGGGTACGTGAAAACGA ATTGAACGAGACCTAGTCGAAGAGCTTTCTGGCTTTTTGCCTCTTCGTCG GCGCTCGTCGTGCGCTGCCCCGTCTCATCTCGTCCCATTGTCTATTGCCT ATTGTCTATTGTCAGGTCGACCTCGGAACGGGGGAGGTCGGCAAGAGCGT GTACAGTGGCCAGAGACACCACTGCGCCATTCTCACGGGGGGCAGTGTCA AG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69972:437..3188-

>mRNA_H-elongata_contig69972.14644.1 ID=mRNA_H-elongata_contig69972.14644.1|Name=mRNA_H-elongata_contig69972.14644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig69972:437..3188- (Himanthalia elongata Himel1 dioecious)
GGCGAAAACGACTGGGGACAGCTCGGGCAGGGCGACTCCGTGGATCGCGG
AGACGACCCTGACCTCATGGGGGACGCTCTTCTGGAAGTCGACCTGGGGA
CATCTCCCTCGGGGACCGGTTCCGCCGTGGCGATCGCCGTCAGCACGGGG
CAGCAGTTCACCTGCGTGCTTGTCGAGGGTGGAAGCGTTAAGGGCGAAAA
CGACTGGGGACAGCTCGGGCAGGGCGACTCCGTGGATCGCGGAGACGACC
CTGACCTCATGGGGGACGCTCTTCTGGAAGTCGACCTGGGGACATCTCCC
TCGGGGACCGGTTCCGCCGTGGCGATCGCCGTCAGCACGGGGCAGCAGTT
CACCTGCGTGCTTGTCGAGGGTGGAAGCGTTAAGTGCTTCGGACGAAACG
ACGAGGGCCAGTGCGGAAGGGGCAACCTCGACGAGTCCATCGGAACGGAC
GATGAGGACATGGGGGACTCGCTGCCCTACGTGGATCTGGGCACCGGTGT
CGAAGTCGTGTCGATATCTTCGGGAACGTCGACGACCTGCGCGACCCTCT
TGGATGGCGGGATCAAGTGCTTCGGACGAAACGACGAGGGCCAGTGCGGA
AGGGGCAACCTCGACGAGTCCATCGGAACGGACGATGAGGACATGGGGGA
CTCGCTGCCCTACGTGGATCTGGGCACCGGTGTCGAAGTCGTGTCGATAT
CTTCGGGAACGTCGACGACCTGCGCGACCCTCTTGGATGGCGGGATCAAG
TGCTGGGGCGGCAATTCGTACGGTGGCGTTGGTGTGGGAGACTCCGATAA
CCGCGGTGATGACCCTGCTGGGGCGGCAATTCGTACGGTGGCGTTGGTGT
GGGAGACTCCGATAACCGCGGTGATGACCCTTCTGGGATGTTGCCCACAT
ATAGAGGCTTCTGGGATGTTGCCCACATATAGAGGCGTCGACCTCGGAAC
GGGGGAGGTCGGCAAGAGCGTGTACAGTGGCCAGAGACACCACTGCGCCA
TTCTCACGGGGGGCAGTGTCAAGGTCGACCTCGGAACGGGGGAGGTCGGC
AAGAGCGTGTACAGTGGCCAGAGACACCACTGCGCCATTCTCACGGGGGG
CAGTGTCAAG
back to top