mRNA_H-elongata_contig69817.14627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69817.14627.1
Unique NamemRNA_H-elongata_contig69817.14627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69817.14627.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.020e-12
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 2 
Query:  488 ALRRAEENLTAERERFTEDKRTTESKLKLLRLEATRFGELEDELAKKTLRMKQKDAEARALATDRTVVRDLRESLSSK 721
            ALRRAE +L AER++F+  KR +E+K+KLLR  A R  +LED+L+ K+LR+KQK+AEAR LATD  VVR LRESL+ K
Sbjct:  835 ALRRAEASLAAERQKFSAAKRASEAKIKLLRAAAGRADDLEDQLSAKSLRLKQKEAEARVLATDGKVVRGLRESLTCK 912
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69817.14627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHM1_ECTSI2.020e-1261.54TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69817contigH-elongata_contig69817:336..2293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1607
Cds size864
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69817.14627.1prot_H-elongata_contig69817.14627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69817 336..1528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.3567064-CDS-H-elongata_contig69817:335..11871622931095.3567064-CDS-H-elongata_contig69817:335..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69817 336..1187 -
1691679695.9054282-CDS-H-elongata_contig69817:335..11871691679695.9054282-CDS-H-elongata_contig69817:335..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69817 336..1187 -
1622931095.373027-CDS-H-elongata_contig69817:1516..15281622931095.373027-CDS-H-elongata_contig69817:1516..1528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69817 1517..1528 -
1691679695.9135485-CDS-H-elongata_contig69817:1516..15281691679695.9135485-CDS-H-elongata_contig69817:1516..1528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69817 1517..1528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.38687-UTR-H-elongata_contig69817:1528..20611622931095.38687-UTR-H-elongata_contig69817:1528..2061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69817 1529..2061 -
1691679695.9239051-UTR-H-elongata_contig69817:1528..20611691679695.9239051-UTR-H-elongata_contig69817:1528..2061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69817 1529..2061 -
1622931095.401001-UTR-H-elongata_contig69817:2085..22931622931095.401001-UTR-H-elongata_contig69817:2085..2293Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69817 2086..2293 -
1691679695.9312818-UTR-H-elongata_contig69817:2085..22931691679695.9312818-UTR-H-elongata_contig69817:2085..2293Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69817 2086..2293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69817.14627.1

>prot_H-elongata_contig69817.14627.1 ID=prot_H-elongata_contig69817.14627.1|Name=mRNA_H-elongata_contig69817.14627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MMCSDNVINKLRQELDSLRQASVATAAKQRSPRLRHQQHDYRASTSTAST
ASPRTSIASPTPGLTRTFSVSSMGSLGEVGSALDAIVENSDEVENTGVGE
AMVPSPAGSDAEYGKRGVLFGSGGGEDEGSLGAEAGPPRLKLDLVHFDED
ECDDDVEDNDDDDVFVSKFSAADAEASFVQRQRSRLGLRVAPCVAKVSLS
LSPALGCEATARASVASGNSSMSPVLCQPSREGWFTNGLGEPQTHLKMPM
TKYLSSRSTSKLDFKPTRKLDTLDHGLGGQGNAVVLEL
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mRNA from alignment at H-elongata_contig69817:336..2293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69817.14627.1 ID=mRNA_H-elongata_contig69817.14627.1|Name=mRNA_H-elongata_contig69817.14627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1958bp|location=Sequence derived from alignment at H-elongata_contig69817:336..2293- (Himanthalia elongata Himel1 dioecious)
AGCTTCACTGGCTCAGCTTCTGGAGGATTTCCACGCGTTTCAGATAATTG
CATCCCAGGAGCGAGAGGCTTTTCAGAAGGCGAAGCAGGAGCTGGTGGAG
ATTCGCGAGCAGTTCACGAGGTTCCGGCGGGATGTCGACGCAAAGGCCGC
TAGCAGGAAAGTCGACTTCGACGCAGCCTCGGCGATGGCGGCGGAAGCGC
TCGAGCAGGCCCGGGCTGAGTTGAAGAAGGAGCGGGGATATGCGGCATCA
TACAAGAGAGAGGCGGAAGAGGCCCGCGAGAAGCAGGAGGAAGAGCGACG
GGCTAGAGAGAGCGCGAGCGTCGATCTCGCCCAGGCTCGCGAGGCTCTGG
CCAGCGAGCGCGTGCGCTCCGAGGCATTGAACGAGAAAGCCACCACGTTG
GACAAGCACCTCGAGGTAGCTCGCACGGTTCAGGCGTGCGCAGACATAGC
TCTCGCGAAGGGACGGGAGAAGCTGAGCGTTCTCCGTAGCGAATCGAACA
GCGCGCGCGAGGCGCTGAGGCGGGCCGAGGAGAACCTGACCGCCGAGCGG
GAGCGTTTCACGGAGGACAAAAGGACGACCGAGTCGAAGCTTAAGCTGCT
TCGGTTAGAGGCCACTAGGTTTGGCGAGCTGGAGGACGAGCTTGCGAAGA
AAACCCTTCGCATGAAACAGAAAGACGCCGAAGCACGGGCGCTTGCTACG
GACCGAACTGTGGTTAGGGATCTGCGGGAGAGCTTGTCCTCCAAGGTAAG
GCCTAAGAAGCGAAAATGATGTGCAGCGCGTGGAGTCATGTTTCTCTAGG
TCGAACGTTATTAATGGTGAGCACTGTTATAGTTCTGCTGTATTTGACTG
AGGCGTGGGGTAATCCCTACGGATCGGATGCTGCGAAGGGTAATCGCTAC
TGGTGCCTTCAGAAGAGTCGACACTGATATATGTCTTGAGGTTTGAAAAA
TGGAGGCGTTCTTGTGGTTGCCGAGTAGAAAATGTCCCGTGCTCTCGTGC
TAAAACTACGCTTGTCTCCGGTCGCCATTAATATCTTGGATTGATTTGTA
CATAGTGCTTGTCGTGACGACGACCTGCGGTATCCCACCAATCCACCGCC
CTGCAGGACAACGTAATCAACAAGCTTAGGCAGGAACTCGACAGCCTGCG
CCAGGCATCCGTAGCAACAGCTGCGAAACAACGAAGCCCCCGGCTCCGAC
ACCAGCAGCATGATTACCGAGCCTCGACAAGTACGGCCAGTACAGCCAGC
CCTAGGACGTCGATCGCCAGCCCGACGCCGGGCTTGACTCGTACGTTTTC
GGTCTCATCCATGGGCTCTCTCGGCGAGGTGGGCTCTGCGCTCGATGCCA
TCGTTGAAAACAGCGATGAGGTGGAGAACACGGGCGTGGGTGAAGCAATG
GTTCCTTCGCCAGCTGGAAGCGATGCAGAATATGGTAAACGTGGGGTACT
GTTCGGTAGTGGTGGAGGAGAGGACGAAGGGTCTCTCGGTGCAGAGGCGG
GACCCCCACGGCTGAAGCTCGACCTGGTGCACTTTGACGAGGATGAATGC
GACGACGATGTCGAGGACAACGACGATGACGATGTGTTCGTTAGCAAGTT
CTCTGCAGCGGACGCCGAGGCTTCTTTCGTCCAGAGGCAGAGAAGCAGGC
TCGGCTTGCGTGTAGCACCTTGTGTCGCAAAGGTCTCGCTCAGTCTGTCG
CCGGCTCTTGGATGCGAGGCGACGGCGCGCGCCAGTGTTGCCTCTGGGAA
CAGTAGCATGTCGCCGGTTCTTTGTCAGCCGTCGAGGGAAGGCTGGTTCA
CCAATGGCCTAGGCGAGCCGCAGACGCACCTCAAGATGCCAATGACCAAG
TATCTCTCGTCCAGATCAACATCCAAATTGGACTTCAAGCCCACGCGGAA
GCTGGATACGCTGGACCACGGCCTCGGCGGGCAGGGTAACGCTGTCGTTC
TCGAGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig69817:336..2293-

>mRNA_H-elongata_contig69817.14627.1 ID=mRNA_H-elongata_contig69817.14627.1|Name=mRNA_H-elongata_contig69817.14627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig69817:336..2293- (Himanthalia elongata Himel1 dioecious)
ATGATGTGCAGCATGATGTGCAGCGACAACGTAATCAACAAGCTTAGGCA
GGAACTCGACAGCCTGCGCCAGGCATCCGTAGCAACAGCTGCGAAACAAC
GAAGCCCCCGGCTCCGACACCAGCAGCATGATTACCGAGCCTCGACAAGT
ACGGCCAGTACAGCCAGCCCTAGGACGTCGATCGCCAGCCCGACGCCGGG
CTTGACTCGTACGTTTTCGGTCTCATCCATGGGCTCTCTCGGCGAGGTGG
GCTCTGCGCTCGATGCCATCGTTGAAAACAGCGATGAGGTGGAGAACACG
GGCGTGGGTGAAGCAATGGTTCCTTCGCCAGCTGGAAGCGATGCAGAATA
TGGTAAACGTGGGGTACTGTTCGGTAGTGGTGGAGGAGAGGACGAAGGGT
CTCTCGGTGCAGAGGCGGGACCCCCACGGCTGAAGCTCGACCTGGTGCAC
TTTGACGAGGATGAATGCGACGACGATGTCGAGGACAACGACGATGACGA
TGTGTTCGTTAGCAAGTTCTCTGCAGCGGACGCCGAGGCTTCTTTCGTCC
AGAGGCAGAGAAGCAGGCTCGGCTTGCGTGTAGCACCTTGTGTCGCAAAG
GTCTCGCTCAGTCTGTCGCCGGCTCTTGGATGCGAGGCGACGGCGCGCGC
CAGTGTTGCCTCTGGGAACAGTAGCATGTCGCCGGTTCTTTGTCAGCCGT
CGAGGGAAGGCTGGTTCACCAATGGCCTAGGCGAGCCGCAGACGCACCTC
AAGATGCCAATGACCAAGTATCTCTCGTCCAGATCAACATCCAAATTGGA
CTTCAAGCCCACGCGGAAGCTGGATACGCTGGACCACGGCCTCGGCGGGC
AGGGTAACGCTGTCGTTCTCGAGCTAGACAACGTAATCAACAAGCTTAGG
CAGGAACTCGACAGCCTGCGCCAGGCATCCGTAGCAACAGCTGCGAAACA
ACGAAGCCCCCGGCTCCGACACCAGCAGCATGATTACCGAGCCTCGACAA
GTACGGCCAGTACAGCCAGCCCTAGGACGTCGATCGCCAGCCCGACGCCG
GGCTTGACTCGTACGTTTTCGGTCTCATCCATGGGCTCTCTCGGCGAGGT
GGGCTCTGCGCTCGATGCCATCGTTGAAAACAGCGATGAGGTGGAGAACA
CGGGCGTGGGTGAAGCAATGGTTCCTTCGCCAGCTGGAAGCGATGCAGAA
TATGGTAAACGTGGGGTACTGTTCGGTAGTGGTGGAGGAGAGGACGAAGG
GTCTCTCGGTGCAGAGGCGGGACCCCCACGGCTGAAGCTCGACCTGGTGC
ACTTTGACGAGGATGAATGCGACGACGATGTCGAGGACAACGACGATGAC
GATGTGTTCGTTAGCAAGTTCTCTGCAGCGGACGCCGAGGCTTCTTTCGT
CCAGAGGCAGAGAAGCAGGCTCGGCTTGCGTGTAGCACCTTGTGTCGCAA
AGGTCTCGCTCAGTCTGTCGCCGGCTCTTGGATGCGAGGCGACGGCGCGC
GCCAGTGTTGCCTCTGGGAACAGTAGCATGTCGCCGGTTCTTTGTCAGCC
GTCGAGGGAAGGCTGGTTCACCAATGGCCTAGGCGAGCCGCAGACGCACC
TCAAGATGCCAATGACCAAGTATCTCTCGTCCAGATCAACATCCAAATTG
GACTTCAAGCCCACGCGGAAGCTGGATACGCTGGACCACGGCCTCGGCGG
GCAGGGTAACGCTGTCGTTCTCGAGCTA
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