mRNA_H-elongata_contig6974.14623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6974.14623.1
Unique NamemRNA_H-elongata_contig6974.14623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6974.14623.1 vs. uniprot
Match: A0A6H5JHC1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.520e-7
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = -2 
Query:    2 ALSLWNMLYADDTRVVSQSPEQLRKMMGVIVVLCAGFGLIVSEAK 136
            A +LW MLYADDT +VS+SPE L KMM VIV +   FGL+VSE K
Sbjct:  292 AEALWAMLYADDTAIVSRSPESLEKMMSVIVRVAGLFGLMVSEQK 336
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BLAST of mRNA_H-elongata_contig6974.14623.1 vs. uniprot
Match: A0A6H5KLR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.550e-6
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = -2 
Query:    2 SLWNMLYADDTRVVSQSPEQLRKMMGVIVVLCAGFGLIVSEAK 130
            +LW MLYADD+ +VS+SP+ L K+M VIV +   FGL+VSE K
Sbjct:  156 ALWAMLYADDSPIVSRSPQSLEKIMSVIVRVAGLFGLMVSEPK 198
[Close]
BLAST of mRNA_H-elongata_contig6974.14623.1 vs. uniprot
Match: A0A6H5JIM6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM6_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 3.150e-5
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = -2 
Query:    2 MLYADDTRVVSQSPEQLRKMMGVIVVLCAGFGLIVSEAK 118
            MLYADD  +VS+SPE L KM+ VIV +   FGL+VSE K
Sbjct:    1 MLYADDAAIVSRSPEDLEKMISVIVRVAGLFGLMVSEPK 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6974.14623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHC1_9PHAE1.520e-764.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KLR9_9PHAE8.550e-658.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIM6_9PHAE3.150e-561.54Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6974contigH-elongata_contig6974:8422..9460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size428
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6974.14623.1prot_H-elongata_contig6974.14623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6974 8422..9443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.9503975-CDS-H-elongata_contig6974:8421..86971622931094.9503975-CDS-H-elongata_contig6974:8421..8697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6974 8422..8697 -
1691679695.7516289-CDS-H-elongata_contig6974:8421..86971691679695.7516289-CDS-H-elongata_contig6974:8421..8697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6974 8422..8697 -
1622931094.96644-CDS-H-elongata_contig6974:9308..94431622931094.96644-CDS-H-elongata_contig6974:9308..9443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6974 9309..9443 -
1691679695.760907-CDS-H-elongata_contig6974:9308..94431691679695.760907-CDS-H-elongata_contig6974:9308..9443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6974 9309..9443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.9819891-UTR-H-elongata_contig6974:9443..94601622931094.9819891-UTR-H-elongata_contig6974:9443..9460Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6974 9444..9460 -
1691679695.7706776-UTR-H-elongata_contig6974:9443..94601691679695.7706776-UTR-H-elongata_contig6974:9443..9460Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6974 9444..9460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6974.14623.1

>prot_H-elongata_contig6974.14623.1 ID=prot_H-elongata_contig6974.14623.1|Name=mRNA_H-elongata_contig6974.14623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MRPNPAHKTTITPIIFLSCSGDCETTLVSSAYSMFHSESARDVPPSPSQG
GITIEGDLEQLNGNSVRSNSLSVRFAIERMVSVNSCIVGSTPGRMFSGHW
SGPSVMFASSFGDLVFRKVWNHWTHLSTDIFLLFFL*
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mRNA from alignment at H-elongata_contig6974:8422..9460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6974.14623.1 ID=mRNA_H-elongata_contig6974.14623.1|Name=mRNA_H-elongata_contig6974.14623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1039bp|location=Sequence derived from alignment at H-elongata_contig6974:8422..9460- (Himanthalia elongata Himel1 dioecious)
CTTTGGCCTCTGATACGATGAGGCCAAACCCCGCACACAAGACCACAATC
ACGCCCATCATCTTCCTAAGCTGTTCGGGCGATTGCGAGACGACTCTGGT
ATCGTCAGCGTATAGCATGTTCCACAGCGAGAGCGCCAGGGATGTCCCTC
CGGTGAGTTCTCCCCCCTGCCCCTGAGGTGCACCAGGGTGTCCATGGCGT
ATATGTCTGCTTTAAAACCCGTTTCGACCACGTTAATAACCGCCGCGAAA
AATATGTTGAACAGAAGGGGCGTGAGCACGCACCCTTGACGAAGGCCCTG
TTCCACAGCGAGTCACCCCGAACAAACCCAGTCGTCTAGCCGCACGCATG
CTCGCATGCCATCATGGAATTGACGTCGCACCCCAAAACGGGCGAGTACT
GATCAGAGAAGGGTTCGGTCAACACAGTTGTACGTTTTTTTAAGGCCGAT
ACAACATACATACAACGGGATATATTTCTTCCGCGCCAACTCATGTAGTC
GATGAATCATGAAAATAATATCGGTGGTAGAACGGCTCTGTCGGAAACCA
CTCTGTTCCTCCGGGAGGATCCCTACGCGTTCGCAGTATTCATTGAGGTG
ACGAGCGATGATCTTCAGCAGTACCTTGCCCGAAATACCCCTGTAGTTAC
CGCATTATGTCTGATATTTTTTCTTGTGGAGTGCCTTGATGATGTCATTT
TCCCACTGCTGCCCCCCCCCCCCCCCCCCCCCCCCCCGAAATATAAACGA
CGATATCGAGCAGTCTCCATCGCAGGGCGGGATCACCATTGAGGGCGATC
TTGAACAGCTCAACGGAAACTCCGTCCGGTCCAACAGCCTTTCTGTTCGG
TTCGCTATCGAGCGGATGGTGTCGGTTAACTCCTGCATCGTGGGCTCAAC
TCCTGGCAGGATGTTTTCGGGACACTGGTCGGGGCCTTCGGTGATGTTTG
CGTCGAGCTTCGGCGACTTGGTGTTCAGGAAAGTGTGGAACCATTGGACC
CATTTATCAACGGACATTTTTCTTCTTTTCTTTTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig6974:8422..9460-

>mRNA_H-elongata_contig6974.14623.1 ID=mRNA_H-elongata_contig6974.14623.1|Name=mRNA_H-elongata_contig6974.14623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig6974:8422..9460- (Himanthalia elongata Himel1 dioecious)
ATGAGGCCAAACCCCGCACACAAGACCACAATCACGCCCATCATCTTCCT
AAGCTGTTCGGGCGATTGCGAGACGACTCTGGTATCGTCAGCGTATAGCA
TGTTCCACAGCGAGAGCGCCAGGGATGTCCCTCCGATGAGGCCAAACCCC
GCACACAAGACCACAATCACGCCCATCATCTTCCTAAGCTGTTCGGGCGA
TTGCGAGACGACTCTGGTATCGTCAGCGTATAGCATGTTCCACAGCGAGA
GCGCCAGGGATGTCCCTCCGTCTCCATCGCAGGGCGGGATCACCATTGAG
GGCGATCTTGAACAGCTCAACGGAAACTCCGTCCGGTCCAACAGCCTTTC
TGTTCGGTTCGCTATCGAGCGGATGGTGTCGGTTAACTCCTGCATCGTGG
GCTCAACTCCTGGCAGGATGTTTTCGGGACACTGGTCGGGGCCTTCGGTG
ATGTTTGCGTCGAGCTTCGGCGACTTGGTGTTCAGGAAAGTGTGGAACCA
TTGGACCCATTTATCAACGGACATTTTTCTTCTTTTCTTTTTATAATCTC
CATCGCAGGGCGGGATCACCATTGAGGGCGATCTTGAACAGCTCAACGGA
AACTCCGTCCGGTCCAACAGCCTTTCTGTTCGGTTCGCTATCGAGCGGAT
GGTGTCGGTTAACTCCTGCATCGTGGGCTCAACTCCTGGCAGGATGTTTT
CGGGACACTGGTCGGGGCCTTCGGTGATGTTTGCGTCGAGCTTCGGCGAC
TTGGTGTTCAGGAAAGTGTGGAACCATTGGACCCATTTATCAACGGACAT
TTTTCTTCTTTTCTTTTTATAA
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