mRNA_H-elongata_contig69606.14607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69606.14607.1
Unique NamemRNA_H-elongata_contig69606.14607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69606.14607.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.360e-23
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 2 
Query:   65 IAFEKSPDVAYLANVVVDRNQRRRGIGRLMINAAIEMVRELWPMETRIYVTVEKGNDVAIAVYEALDFELTALEDDMLARSRKRPARIYFSKSL 346
            I  EK PDVAYLANVVVDR QRRRGIGR M+N+AIE+                 GND+A+A+Y+ + FEL ALED+M+ARSR+RP R+Y SK L
Sbjct:  273 IKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI-----------------GNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPL 349
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BLAST of mRNA_H-elongata_contig69606.14607.1 vs. uniprot
Match: A0A7S3SZK1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZK1_9SPIT)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-5
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 2 
Query:   44 DGSEVGTIA-FEKSPDVAYLANVVVDRNQRRRGIGRLMINAAIEMVRELWPMETRIYVTVEKGNDVAIAVYEALDFELTA 280
            DGS +   A  EK    AY++N+ VD + RRRGIGRL++ A+ E VR   P    I++ V   ND A+  Y++L +E+ A
Sbjct:  129 DGSSLDVCASIEKR---AYVSNLAVDIDMRRRGIGRLLMKASEEEVRAWVPSNRNIWLEVSLDNDSALRFYKSLGYEMVA 205
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BLAST of mRNA_H-elongata_contig69606.14607.1 vs. uniprot
Match: A0A7J6MDC8_PEROL (N-acetyltransferase domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MDC8_PEROL)

HSP 1 Score: 54.3 bits (129), Expect = 4.880e-5
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 2 
Query:   89 VAYLANVVVDRNQRRRGIGRLMINAAIEMVRELWPMETRIYVTVEKGNDVAIAVYEALDFELTALEDDMLARSRKRPAR 325
            V Y++ V V  N+RR+GIG +M+  A+E +R  WP  T  Y+ V   N+ A+ +Y+ L+F     +D       K P R
Sbjct:  146 VVYISIVYVVSNERRKGIGEMMLRKALEDIRIKWPRVTEAYLRVNPYNEGALRLYKRLNFTFVTEKDGNYYLFYKFPPR 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69606.14607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G199_ECTSI6.360e-2357.45N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S3SZK1_9SPIT1.450e-541.25Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7J6MDC8_PEROL4.880e-535.44N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69606contigH-elongata_contig69606:984..2373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
Hectar predicted targeting categoryother localisation
Exons3
Model size859
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69606.14607.1prot_H-elongata_contig69606.14607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69606 1515..2222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.5193434-UTR-H-elongata_contig69606:983..13091622931093.5193434-UTR-H-elongata_contig69606:983..1309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69606 984..1309 -
1691679695.0887408-UTR-H-elongata_contig69606:983..13091691679695.0887408-UTR-H-elongata_contig69606:983..1309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69606 984..1309 -
1622931093.5366497-UTR-H-elongata_contig69606:1333..15141622931093.5366497-UTR-H-elongata_contig69606:1333..1514Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69606 1334..1514 -
1691679695.0973036-UTR-H-elongata_contig69606:1333..15141691679695.0973036-UTR-H-elongata_contig69606:1333..1514Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69606 1334..1514 -
1622931093.5853963-UTR-H-elongata_contig69606:2222..23731622931093.5853963-UTR-H-elongata_contig69606:2222..2373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69606 2223..2373 -
1691679695.1366303-UTR-H-elongata_contig69606:2222..23731691679695.1366303-UTR-H-elongata_contig69606:2222..2373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69606 2223..2373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.5526068-CDS-H-elongata_contig69606:1514..16401622931093.5526068-CDS-H-elongata_contig69606:1514..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69606 1515..1640 -
1691679695.1062567-CDS-H-elongata_contig69606:1514..16401691679695.1062567-CDS-H-elongata_contig69606:1514..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69606 1515..1640 -
1622931093.5699408-CDS-H-elongata_contig69606:2147..22221622931093.5699408-CDS-H-elongata_contig69606:2147..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69606 2148..2222 -
1691679695.122486-CDS-H-elongata_contig69606:2147..22221691679695.122486-CDS-H-elongata_contig69606:2147..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69606 2148..2222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69606.14607.1

>prot_H-elongata_contig69606.14607.1 ID=prot_H-elongata_contig69606.14607.1|Name=mRNA_H-elongata_contig69606.14607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MINAAIEMVRELWPMETRIYVTVEKGNDVAIAVYEALDFELTALEDDMLA
RSRKRPARIYFSKSLV*
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mRNA from alignment at H-elongata_contig69606:984..2373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69606.14607.1 ID=mRNA_H-elongata_contig69606.14607.1|Name=mRNA_H-elongata_contig69606.14607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-elongata_contig69606:984..2373- (Himanthalia elongata Himel1 dioecious)
CGAACGTGTGACGGATGGGGGGGGTGCTCTCGGGAGCGGTGACGATGGCA
GCGAGGTCGGCACCATCGCGTTCGAGAAGTCCCCCGACGTGGCGTACTTG
GCAAACGTCGTGGTGGATCGAAATCAGAGAAGGAGGGGGATCGGTCGCCT
CATGATCAACGCGGCGATTGAGATGGTCCGGGAGCTATGGCCAATGGAAA
CGCGTATATACGTCACCGTTGAAAAGGTGAGGGACTAACGGGGCTGTAGA
GGATATGGCGAGACGCGGGCACGAATTGCACACTCGCACACTATTAGTGA
AAGAGCATCTCAGCTAAAGTCTAGAGATATGCGTTGAAAAATGCAATGAA
AAATAATCAACCTGAAAATATAGATTAAGTATGTCTAAATGGTAGCCTTG
ATGTGTACGGAGTACGATGGTGGCAGCCGTCCGAAAACCTTGACCTTCAC
ACTAATTACCAATCGCGGTAAAAATCCGGAGCTGCCTCGCTTGTCGGTCG
GATACCGCGGCAGTCAGCAAGCACACAAGAACTCCACACATTTTTACTTC
TTTTCTTTTACTGACTATAGCTGGGTTACCAAGTCCGGATTAAATGAACG
ATGCAATATCAAGGAGAAAGCCAGAGCGTTTTTACCATTTTTCAAAAATT
GAGCAAGGCAGAGCACCCACCGTTTGCCTCTTTGGAGTGTGACCACGCAC
GCTCCTTGGTTCCTTCGTGCGGCCAAATTCCAGGGAAACGACGTCGCCAT
TGCCGTATACGAAGCATTAGATTTCGAGCTCACCGCGCTGGAGGACGACA
TGTTGGCCAGGAGCCGAAAACGACCGGCCCGGATATACTTCTCGAAGTCG
TTGGTCTAGATCTAGGGCGTTTAGGAGTATCATGTTTTAAGAGTGCAGGA
CGCGCAGCTCTTTTTAATAGGGCTACTATTTCAATGGAGTACAGAGAGAC
ATGTCTCTCAGCCGAAGTGTTGTTGTCCCATTTATTCTGGACATCAGACT
TTTGGGTTCACACAGGATTTCTCCGCCTTCATTCTGCGGTGCTTGCCTTG
ATTTTTATTGTGAGAAGGATCCAGCAGCCCCTTTCCCTCGTCGACGGTGA
AGTCGAATTTTTGTCTACCCATGAAATAATCGTTTTTACTTGTTGGGCAT
GATGTGATAAAAAATGCACTGAGATTCGAACTCACGTCCCAACGTCAGGA
GGTTTCGATGTTACCAACTAAACCACCAGGGCCCCTAGTGACATGTACGT
ACTATTCGATGTGTCGTGTTGATTGATCCACGATCTTGGGCATGTAGGTA
GCACGAAGGCAACATTTCTTCACCGCTACTTGTGTGGTTCTCATCATACA
CTATTTGTTTTTGTGTGTAATTAATAAATTGTACATAACC
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Coding sequence (CDS) from alignment at H-elongata_contig69606:984..2373-

>mRNA_H-elongata_contig69606.14607.1 ID=mRNA_H-elongata_contig69606.14607.1|Name=mRNA_H-elongata_contig69606.14607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig69606:984..2373- (Himanthalia elongata Himel1 dioecious)
ATGATCAACGCGGCGATTGAGATGGTCCGGGAGCTATGGCCAATGGAAAC
GCGTATATACGTCACCGTTGAAAAGATGATCAACGCGGCGATTGAGATGG
TCCGGGAGCTATGGCCAATGGAAACGCGTATATACGTCACCGTTGAAAAG
GGAAACGACGTCGCCATTGCCGTATACGAAGCATTAGATTTCGAGCTCAC
CGCGCTGGAGGACGACATGTTGGCCAGGAGCCGAAAACGACCGGCCCGGA
TATACTTCTCGAAGTCGTTGGTCTAGGGAAACGACGTCGCCATTGCCGTA
TACGAAGCATTAGATTTCGAGCTCACCGCGCTGGAGGACGACATGTTGGC
CAGGAGCCGAAAACGACCGGCCCGGATATACTTCTCGAAGTCGTTGGTCT
AG
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