mRNA_H-elongata_contig69440.14593.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69440.14593.1
Unique NamemRNA_H-elongata_contig69440.14593.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69440.14593.1 vs. uniprot
Match: A0A6H5K1V2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.680e-27
Identity = 64/106 (60.38%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:   16 SHPLSSSKPSEVMAAVASRFDGRENDLNTTVSHFNITTAS--AGESSSHPVATDRSFKSARMAVDKASTKKEKRVSSQVLKMLVKSKAIGDKRLRMEDRFFVEVHY 327
            SH LS SKPSEVM+AV SRFDGRE +LN   +HFNI  +   AGE S+   A D+  +++++A+DKA+T+K KRVS+QV +ML+K+KA+GDK+LRMEDRFF+EVHY
Sbjct:   66 SHRLSLSKPSEVMSAVTSRFDGREKELNAVTTHFNIKASEGEAGEGSAG--APDKLLRNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHY 169
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BLAST of mRNA_H-elongata_contig69440.14593.1 vs. uniprot
Match: D8LBN6_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-11
Identity = 33/52 (63.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:  172 RSFKSARMAVDKASTKKEKRVSSQVLKMLVKSKAIGDKRLRMEDRFFVEVHY 327
            R  K++++A+DKA+T+K KR+S+QV +ML+K+KA+GDK+LRMEDRFF+EVHY
Sbjct:   32 RLLKNSQLAMDKAATEKGKRMSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHY 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69440.14593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1V2_9PHAE1.680e-2760.38Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D8LBN6_ECTSI1.440e-1163.46Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69440contigH-elongata_contig69440:334..971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.3076413-CDS-H-elongata_contig69440:333..4931622931092.3076413-CDS-H-elongata_contig69440:333..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69440 334..493 -
1691679694.618044-CDS-H-elongata_contig69440:333..4931691679694.618044-CDS-H-elongata_contig69440:333..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69440 334..493 -
1622931092.3269985-CDS-H-elongata_contig69440:798..9711622931092.3269985-CDS-H-elongata_contig69440:798..971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69440 799..971 -
1691679694.6266284-CDS-H-elongata_contig69440:798..9711691679694.6266284-CDS-H-elongata_contig69440:798..971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69440 799..971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69440.14593.1prot_H-elongata_contig69440.14593.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69440 334..971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69440.14593.1

>prot_H-elongata_contig69440.14593.1 ID=prot_H-elongata_contig69440.14593.1|Name=mRNA_H-elongata_contig69440.14593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
TTARSSHPLSSSKPSEVMAAVASRFDGRENDLNTTVSHFNITTASAGESS
SHPVATDRSFKSARMAVDKASTKKEKRVSSQVLKMLVKSKAIGDKRLRME
DRFFVEVHYW*
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mRNA from alignment at H-elongata_contig69440:334..971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69440.14593.1 ID=mRNA_H-elongata_contig69440.14593.1|Name=mRNA_H-elongata_contig69440.14593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig69440:334..971- (Himanthalia elongata Himel1 dioecious)
ACAACAGCGCGCAGCTCACATCCACTATCATCGAGCAAACCCTCGGAAGT
CATGGCGGCTGTTGCGTCTCGTTTTGACGGTCGCGAGAACGATCTCAACA
CCACGGTATCGCACTTCAACATAACTACGGCTTCGGCAGGAGAGAGCAGC
AGTCATCCTGTGGCAACAGATCGGTATGCAAGCATAAAATCGTCCTCGTG
ATCCTCGCCTAACCGTAAAGCCATTGAATGCATTTCGCCGACAAATATTT
TGAAGGTACTTTTCAGCGATAACTGTTCAACAATAATTGACGTGTCTGTT
ATGAAATCATGTTAAGTTATGAAGGTTAACATGTTGTAATAACTGTTCAC
CGATAATTGCCTTGTCTGTTATGACAACATGCTTAGTAGCGATATAAAGC
CTAACAGCTCAAGTCTGCGGTTCCGCTCGTGATACAGGTTGTTCGTACTA
AAAACATTAAGTGCCTTTTAACACACAGGAGCTTTAAGAGCGCACGGATG
GCTGTCGACAAGGCCTCCACGAAGAAGGAGAAGCGAGTTTCGTCGCAAGT
GCTCAAGATGCTCGTCAAGTCGAAGGCGATCGGAGACAAACGCCTGCGCA
TGGAAGATCGTTTCTTCGTCGAGGTGCACTATTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69440:334..971-

>mRNA_H-elongata_contig69440.14593.1 ID=mRNA_H-elongata_contig69440.14593.1|Name=mRNA_H-elongata_contig69440.14593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig69440:334..971- (Himanthalia elongata Himel1 dioecious)
ACAACAGCGCGCAGCTCACATCCACTATCATCGAGCAAACCCTCGGAAGT
CATGGCGGCTGTTGCGTCTCGTTTTGACGGTCGCGAGAACGATCTCAACA
CCACGGTATCGCACTTCAACATAACTACGGCTTCGGCAGGAGAGAGCAGC
AGTCATCCTGTGGCAACAGATCGACAACAGCGCGCAGCTCACATCCACTA
TCATCGAGCAAACCCTCGGAAGTCATGGCGGCTGTTGCGTCTCGTTTTGA
CGGTCGCGAGAACGATCTCAACACCACGGTATCGCACTTCAACATAACTA
CGGCTTCGGCAGGAGAGAGCAGCAGTCATCCTGTGGCAACAGATCGGAGC
TTTAAGAGCGCACGGATGGCTGTCGACAAGGCCTCCACGAAGAAGGAGAA
GCGAGTTTCGTCGCAAGTGCTCAAGATGCTCGTCAAGTCGAAGGCGATCG
GAGACAAACGCCTGCGCATGGAAGATCGTTTCTTCGTCGAGGTGCACTAT
TGGTGAGAGCTTTAAGAGCGCACGGATGGCTGTCGACAAGGCCTCCACGA
AGAAGGAGAAGCGAGTTTCGTCGCAAGTGCTCAAGATGCTCGTCAAGTCG
AAGGCGATCGGAGACAAACGCCTGCGCATGGAAGATCGTTTCTTCGTCGA
GGTGCACTATTGGTGA
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