mRNA_H-elongata_contig68565.14495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68565.14495.1
Unique NamemRNA_H-elongata_contig68565.14495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68565.14495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68565contigH-elongata_contig68565:829..3285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1663
Cds size1368
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68565.14495.1prot_H-elongata_contig68565.14495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68565 829..2196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.4130142-CDS-H-elongata_contig68565:828..21961622931080.4130142-CDS-H-elongata_contig68565:828..2196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68565 829..2196 +
1691679689.8533988-CDS-H-elongata_contig68565:828..21961691679689.8533988-CDS-H-elongata_contig68565:828..2196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68565 829..2196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.4271505-UTR-H-elongata_contig68565:2196..22251622931080.4271505-UTR-H-elongata_contig68565:2196..2225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68565 2197..2225 +
1691679689.8745446-UTR-H-elongata_contig68565:2196..22251691679689.8745446-UTR-H-elongata_contig68565:2196..2225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68565 2197..2225 +
1622931080.458983-UTR-H-elongata_contig68565:3019..32851622931080.458983-UTR-H-elongata_contig68565:3019..3285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68565 3020..3285 +
1691679689.8834927-UTR-H-elongata_contig68565:3019..32851691679689.8834927-UTR-H-elongata_contig68565:3019..3285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68565 3020..3285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68565.14495.1

>prot_H-elongata_contig68565.14495.1 ID=prot_H-elongata_contig68565.14495.1|Name=mRNA_H-elongata_contig68565.14495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=456bp
MSNSPSSNDILFGLKEEVREHEIMASTTGTSIADSSLREHIVTTYGISIA
PPPVRENTPSTSSASTAPTALRIAVSSGACRVGRPQVPLRSPAALASART
NPPLHLWASLPEEFRCQLLSVTLTALNDDLTAAATEVEPSTAAPAQQEYL
RETVEIRQRRNALATELATIADKGAICPAAVESKENATKNDPRETNHTIR
GVERRHCSLTEDRHASVQAAGPSRPVPVVNMPQPPATRPPPSQRPAAASS
AGITAPPTPRITLHWLAPTPLVPHYAPHHLDAVLSVPCIASHQVLAAPDS
DSDTDAHPVLQASKLHFYTPAFATSFQLPVHDTASAVHEVLQSIRNSRRS
VQGALDITTKQYQVLDDLGFATIVDLNSILQRSMTKPAVRKWCRKYTGSL
EGSSSHPVPPDSSSKGSVVPGCSSQDLKLQSDQGNTECAAEVNNSDLGLD
FEWTS*
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mRNA from alignment at H-elongata_contig68565:829..3285+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68565.14495.1 ID=mRNA_H-elongata_contig68565.14495.1|Name=mRNA_H-elongata_contig68565.14495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2457bp|location=Sequence derived from alignment at H-elongata_contig68565:829..3285+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAACTCACCTTCATCGAACGACATCTTATTTGGCCTCAAAGAGGA
AGTACGCGAGCACGAGATCATGGCCTCCACTACGGGCACTTCTATCGCTG
ACTCTTCCTTACGAGAGCACATAGTCACCACTTACGGTATTTCTATTGCG
CCCCCCCCAGTGCGAGAGAACACACCCTCCACTAGCAGCGCCTCAACTGC
CCCGACGGCCCTTCGCATCGCCGTCAGTAGCGGAGCCTGCCGAGTCGGCA
GACCACAGGTACCCCTCCGTTCACCAGCGGCCCTCGCTAGCGCCAGGACG
AACCCCCCCTTGCACTTGTGGGCCTCCTTACCGGAAGAATTCCGGTGCCA
ATTGCTAAGCGTTACCCTTACCGCCCTCAACGACGACCTCACCGCCGCCG
CTACCGAGGTGGAGCCGAGCACGGCCGCTCCTGCGCAACAAGAATACCTC
AGAGAGACGGTGGAAATTCGACAACGCCGGAATGCCCTGGCGACGGAATT
GGCCACCATCGCCGATAAAGGCGCCATTTGCCCCGCCGCGGTCGAGTCCA
AAGAAAACGCGACCAAGAACGACCCCCGCGAGACCAACCACACCATCCGC
GGCGTGGAACGTCGCCACTGTTCCCTGACGGAAGACCGCCACGCGTCCGT
TCAGGCTGCTGGGCCCTCTCGTCCGGTCCCCGTCGTCAATATGCCGCAAC
CCCCAGCCACACGCCCACCGCCGTCCCAAAGGCCGGCGGCGGCGTCCTCC
GCAGGCATCACTGCACCCCCGACACCTCGAATCACCCTTCATTGGCTTGC
CCCCACACCACTGGTACCTCATTACGCCCCCCATCACCTCGATGCCGTAC
TTTCGGTACCTTGTATCGCCTCCCACCAGGTTCTGGCCGCGCCCGACTCA
GATTCTGATACTGACGCACACCCCGTCCTTCAGGCGTCGAAGCTCCACTT
TTACACCCCAGCATTTGCGACCAGTTTCCAACTCCCGGTCCACGACACAG
CCTCGGCGGTGCACGAGGTTCTCCAGTCCATAAGGAACTCTAGGAGGAGC
GTTCAGGGAGCTCTGGACATCACCACGAAACAATACCAGGTCCTCGACGA
CCTCGGCTTCGCGACCATCGTGGACCTTAACTCCATTCTACAACGCTCGA
TGACCAAACCTGCAGTTCGCAAATGGTGTCGAAAATACACCGGAAGCCTT
GAGGGCAGCAGCTCTCACCCTGTACCACCGGACTCCAGCAGCAAAGGTTC
GGTTGTTCCCGGTTGCTCCAGCCAAGACCTTAAACTTCAAAGCGACCAGG
GCAACACGGAGTGCGCCGCTGAAGTGAATAACTCGGATTTGGGCTTGGAC
TTTGAATGGACTTCATGAAATCGCGGCGGGACGTCTCGAGCGAACAGGCC
AGTTCCCCTAAAAGCTTTTCTCCTTCCAGCTGTGTCCTTGACGCCTCCGG
TCACGATGTTTAAAATAACGTAGCCCTCTCTTGTCACGCTCTGCGCGAAA
ACGAACTATAAATCATGCCCCCCTTGACACACCGACTACTGTCAGCGCAG
ATATCGCCGCCGCCACTACTGCTACCACCGCAGCGATCGACCATTATGTA
GACTTACGCCACACACCCAATCACACCGTCATTGGACCCGAGGGTACCTG
CGATGTCAGATTCTGCGCCCGTCCGCCGCCGATCCCCCCCCCCCCCCAAC
ACCACCCCACTCGAAACCCAACTTCCAAACCGCCTGCCCCCACCCCCCCC
CATCGCCACCCAGTTCGTAACTCTGCTTCGAATCCGCCTGCTCCTGCCCC
CGCCCCCGCCCCCGGGTTCCCATATGATATCACCAATTATAGTCGTAGCC
GCCTCCTAGTCGACCGCCTCTTTATCAATCAATCGCCTTTATCACTAAGG
TGGAAGTAGAATACCACACGCTTGACCTGCACTACATTCCCAAAGTCCAA
TTACTCCAGTTCTTAGTGACGACCGATAGATAAAGCTACTACCAGCTCCT
ACTTTGTTCCCTTCAAGACGCAATATATGGCATTATTAACGTTCCTGACC
TATCGTGCGCAGTTACCATTGATTTCTGTGTAGGTACCCGACTAGCCCAC
GCCTCTTTTGAAACTTGTCAAGACTATGATCCACCCTTACAGACGCGACA
CCCATAACCTTCATCGTTTCGTCGATAACGTATATGCGCAGCTACAGGAA
AGACTGACTCTTGGCATCCAGGGTCCGGCTTCCTTCAAGATCCTCCTGGC
GGACTTCACCTATTATTTCGACCGCGCCCCTCTCGAAGCGGCTTTAACGA
TGTTGCAGCGTTTAGACGTTCCTTTTAGCACGTGCTTCGTAGACTTGCAT
TCGTAATTTTTGCGTAGTCACTGCGAGTCATGTCGAATAAGGGGGCCCAT
TATCCCCTTCCCCGAAGATAACGATGGAACAACTTCGAAAAATATTCGTA
AGGCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig68565:829..3285+

>mRNA_H-elongata_contig68565.14495.1 ID=mRNA_H-elongata_contig68565.14495.1|Name=mRNA_H-elongata_contig68565.14495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2736bp|location=Sequence derived from alignment at H-elongata_contig68565:829..3285+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAACTCACCTTCATCGAACGACATCTTATTTGGCCTCAAAGAGGA
AGTACGCGAGCACGAGATCATGGCCTCCACTACGGGCACTTCTATCGCTG
ACTCTTCCTTACGAGAGCACATAGTCACCACTTACGGTATTTCTATTGCG
CCCCCCCCAGTGCGAGAGAACACACCCTCCACTAGCAGCGCCTCAACTGC
CCCGACGGCCCTTCGCATCGCCGTCAGTAGCGGAGCCTGCCGAGTCGGCA
GACCACAGGTACCCCTCCGTTCACCAGCGGCCCTCGCTAGCGCCAGGACG
AACCCCCCCTTGCACTTGTGGGCCTCCTTACCGGAAGAATTCCGGTGCCA
ATTGCTAAGCGTTACCCTTACCGCCCTCAACGACGACCTCACCGCCGCCG
CTACCGAGGTGGAGCCGAGCACGGCCGCTCCTGCGCAACAAGAATACCTC
AGAGAGACGGTGGAAATTCGACAACGCCGGAATGCCCTGGCGACGGAATT
GGCCACCATCGCCGATAAAGGCGCCATTTGCCCCGCCGCGGTCGAGTCCA
AAGAAAACGCGACCAAGAACGACCCCCGCGAGACCAACCACACCATCCGC
GGCGTGGAACGTCGCCACTGTTCCCTGACGGAAGACCGCCACGCGTCCGT
TCAGGCTGCTGGGCCCTCTCGTCCGGTCCCCGTCGTCAATATGCCGCAAC
CCCCAGCCACACGCCCACCGCCGTCCCAAAGGCCGGCGGCGGCGTCCTCC
GCAGGCATCACTGCACCCCCGACACCTCGAATCACCCTTCATTGGCTTGC
CCCCACACCACTGGTACCTCATTACGCCCCCCATCACCTCGATGCCGTAC
TTTCGGTACCTTGTATCGCCTCCCACCAGGTTCTGGCCGCGCCCGACTCA
GATTCTGATACTGACGCACACCCCGTCCTTCAGGCGTCGAAGCTCCACTT
TTACACCCCAGCATTTGCGACCAGTTTCCAACTCCCGGTCCACGACACAG
CCTCGGCGGTGCACGAGGTTCTCCAGTCCATAAGGAACTCTAGGAGGAGC
GTTCAGGGAGCTCTGGACATCACCACGAAACAATACCAGGTCCTCGACGA
CCTCGGCTTCGCGACCATCGTGGACCTTAACTCCATTCTACAACGCTCGA
TGACCAAACCTGCAGTTCGCAAATGGTGTCGAAAATACACCGGAAGCCTT
GAGGGCAGCAGCTCTCACCCTGTACCACCGGACTCCAGCAGCAAAGGTTC
GGTTGTTCCCGGTTGCTCCAGCCAAGACCTTAAACTTCAAAGCGACCAGG
GCAACACGGAGTGCGCCGCTGAAGTGAATAACTCGGATTTGGGCTTGGAC
TTTGAATGGACTTCATGAATGTCGAACTCACCTTCATCGAACGACATCTT
ATTTGGCCTCAAAGAGGAAGTACGCGAGCACGAGATCATGGCCTCCACTA
CGGGCACTTCTATCGCTGACTCTTCCTTACGAGAGCACATAGTCACCACT
TACGGTATTTCTATTGCGCCCCCCCCAGTGCGAGAGAACACACCCTCCAC
TAGCAGCGCCTCAACTGCCCCGACGGCCCTTCGCATCGCCGTCAGTAGCG
GAGCCTGCCGAGTCGGCAGACCACAGGTACCCCTCCGTTCACCAGCGGCC
CTCGCTAGCGCCAGGACGAACCCCCCCTTGCACTTGTGGGCCTCCTTACC
GGAAGAATTCCGGTGCCAATTGCTAAGCGTTACCCTTACCGCCCTCAACG
ACGACCTCACCGCCGCCGCTACCGAGGTGGAGCCGAGCACGGCCGCTCCT
GCGCAACAAGAATACCTCAGAGAGACGGTGGAAATTCGACAACGCCGGAA
TGCCCTGGCGACGGAATTGGCCACCATCGCCGATAAAGGCGCCATTTGCC
CCGCCGCGGTCGAGTCCAAAGAAAACGCGACCAAGAACGACCCCCGCGAG
ACCAACCACACCATCCGCGGCGTGGAACGTCGCCACTGTTCCCTGACGGA
AGACCGCCACGCGTCCGTTCAGGCTGCTGGGCCCTCTCGTCCGGTCCCCG
TCGTCAATATGCCGCAACCCCCAGCCACACGCCCACCGCCGTCCCAAAGG
CCGGCGGCGGCGTCCTCCGCAGGCATCACTGCACCCCCGACACCTCGAAT
CACCCTTCATTGGCTTGCCCCCACACCACTGGTACCTCATTACGCCCCCC
ATCACCTCGATGCCGTACTTTCGGTACCTTGTATCGCCTCCCACCAGGTT
CTGGCCGCGCCCGACTCAGATTCTGATACTGACGCACACCCCGTCCTTCA
GGCGTCGAAGCTCCACTTTTACACCCCAGCATTTGCGACCAGTTTCCAAC
TCCCGGTCCACGACACAGCCTCGGCGGTGCACGAGGTTCTCCAGTCCATA
AGGAACTCTAGGAGGAGCGTTCAGGGAGCTCTGGACATCACCACGAAACA
ATACCAGGTCCTCGACGACCTCGGCTTCGCGACCATCGTGGACCTTAACT
CCATTCTACAACGCTCGATGACCAAACCTGCAGTTCGCAAATGGTGTCGA
AAATACACCGGAAGCCTTGAGGGCAGCAGCTCTCACCCTGTACCACCGGA
CTCCAGCAGCAAAGGTTCGGTTGTTCCCGGTTGCTCCAGCCAAGACCTTA
AACTTCAAAGCGACCAGGGCAACACGGAGTGCGCCGCTGAAGTGAATAAC
TCGGATTTGGGCTTGGACTTTGAATGGACTTCATGA
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