mRNA_H-elongata_contig6807.14435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6807.14435.1
Unique NamemRNA_H-elongata_contig6807.14435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5K1T7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.740e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K K D  F+ R
Sbjct:  332 IKIPNTYDEAMSSPQREEWKGACSKEMDYLRKHNVYNLVPFSSVPKGEKILGTKFVFKNKLDGRFKAR 399
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.910e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K K D  F+ R
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKAR 631
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.930e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K K D  F+ R
Sbjct:  339 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKAR 406
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.960e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ ++M  PQ   WK V   E A L+KH VY LV  SSVP G +++G+++V K   D  F+ R
Sbjct:  804 IKIPNTYDKAMSYPQREEWKGVCSKEVADLRKHNVYNLVPLSSVPKGDKILGTKFVFKKMLDGRFKAR 871
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.970e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K K D  F+ R
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKAR 631
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.980e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K K D  F+ R
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKAR 631
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.990e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K K D  F+ R
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKAR 631
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5KH19_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH19_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.430e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++V K   D  F+ R
Sbjct:  144 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKNLDGRFQAR 211
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5KLG0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.760e-11
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   W      E   L+KH VY LV  SSVP G++V+G+++V K K D  F+ R
Sbjct:  455 IKIPNTYDEAMSSPQREEWTGACSKEMDDLRKHKVYNLVPLSSVPKGEKVLGTKFVFKNKLDGRFKAR 522
[Close]
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Match: A0A6H5KMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.780e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    7 LKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQRVVGSRWVNKIKADNIFEIR 210
            +K+PNT+ E+M  PQ   WK     E   L+KH VY LV  SSVP G++++G+++  K K D  F+ R
Sbjct:  300 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFGFKKKLDGRFKAR 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6807.14435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1T7_9PHAE9.740e-1244.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K500_9PHAE9.910e-1244.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE9.930e-1244.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0G3_9PHAE9.960e-1244.12CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JRJ1_9PHAE9.970e-1244.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE9.980e-1244.12Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE9.990e-1244.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KH19_9PHAE3.430e-1142.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLG0_9PHAE8.760e-1144.12Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KMR4_9PHAE8.780e-1142.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6807contigH-elongata_contig6807:1803..2012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931074.1132088-CDS-H-elongata_contig6807:1802..20121622931074.1132088-CDS-H-elongata_contig6807:1802..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6807 1803..2012 -
1691679687.0157235-CDS-H-elongata_contig6807:1802..20121691679687.0157235-CDS-H-elongata_contig6807:1802..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6807 1803..2012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6807.14435.1prot_H-elongata_contig6807.14435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6807 1803..2012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6807.14435.1

>prot_H-elongata_contig6807.14435.1 ID=prot_H-elongata_contig6807.14435.1|Name=mRNA_H-elongata_contig6807.14435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
IKLKVPNTFKESMGLPQAAHWKAVADNETACLKKHGVYELVSASSVPAGQ
RVVGSRWVNKIKADNIFEIR
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mRNA from alignment at H-elongata_contig6807:1803..2012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6807.14435.1 ID=mRNA_H-elongata_contig6807.14435.1|Name=mRNA_H-elongata_contig6807.14435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig6807:1803..2012- (Himanthalia elongata Himel1 dioecious)
ATCAAATTAAAGGTCCCGAACACTTTCAAGGAGTCTATGGGCCTCCCCCA
AGCGGCACATTGGAAGGCGGTGGCAGACAATGAGACCGCCTGCCTCAAGA
AGCACGGCGTTTACGAGCTGGTGTCTGCGTCGTCCGTCCCTGCTGGACAG
AGAGTGGTTGGCTCACGCTGGGTCAACAAAATCAAGGCCGACAATATTTT
CGAAATTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig6807:1803..2012-

>mRNA_H-elongata_contig6807.14435.1 ID=mRNA_H-elongata_contig6807.14435.1|Name=mRNA_H-elongata_contig6807.14435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig6807:1803..2012- (Himanthalia elongata Himel1 dioecious)
ATCAAATTAAAGGTCCCGAACACTTTCAAGGAGTCTATGGGCCTCCCCCA
AGCGGCACATTGGAAGGCGGTGGCAGACAATGAGACCGCCTGCCTCAAGA
AGCACGGCGTTTACGAGCTGGTGTCTGCGTCGTCCGTCCCTGCTGGACAG
AGAGTGGTTGGCTCACGCTGGGTCAACAAAATCAAGGCCGACAATATTTT
CGAAATTCGAATCAAATTAAAGGTCCCGAACACTTTCAAGGAGTCTATGG
GCCTCCCCCAAGCGGCACATTGGAAGGCGGTGGCAGACAATGAGACCGCC
TGCCTCAAGAAGCACGGCGTTTACGAGCTGGTGTCTGCGTCGTCCGTCCC
TGCTGGACAGAGAGTGGTTGGCTCACGCTGGGTCAACAAAATCAAGGCCG
ACAATATTTTCGAAATTCGA
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