mRNA_H-elongata_contig68042.14430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68042.14430.1
Unique NamemRNA_H-elongata_contig68042.14430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68042.14430.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.100e-17
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = -1 
Query:  520 QAMQVSTVCGFCGGLGCHTTINVPFGKAAPVMHSTCPYAPRKDARDAAVQLSLKSARTGSDTSSCTNI 723
            +   VSTVCGFCGG+GC +TI+ P G+A P++HSTCP APR DAR  AV L+L SAR  SDTS CTN+
Sbjct: 1084 KTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNM 1151
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BLAST of mRNA_H-elongata_contig68042.14430.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-16
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = -1 
Query:  520 QVSTVCGFCGGLGCHTTINVPFGKAAPVMHSTCPYAPRKDARDAAVQLSLKSARTGSDTSSCTNI 714
            +VST CGFCGG+G  TTI+ P GKA P++HSTCP APR DAR  AV L+L SAR GSDTS CTN+
Sbjct:  410 KVSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNM 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68042.14430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE6.100e-1763.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE1.180e-1667.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68042contigH-elongata_contig68042:2093..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size723
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68042.14430.1prot_H-elongata_contig68042.14430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68042 2093..2761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.473129-CDS-H-elongata_contig68042:2092..26101622931073.473129-CDS-H-elongata_contig68042:2092..2610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68042 2093..2610 +
1691679686.76518-CDS-H-elongata_contig68042:2092..26101691679686.76518-CDS-H-elongata_contig68042:2092..2610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68042 2093..2610 +
1622931073.4851952-CDS-H-elongata_contig68042:2742..27611622931073.4851952-CDS-H-elongata_contig68042:2742..2761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68042 2743..2761 +
1691679686.7756634-CDS-H-elongata_contig68042:2742..27611691679686.7756634-CDS-H-elongata_contig68042:2742..2761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68042 2743..2761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.499762-UTR-H-elongata_contig68042:2761..29471622931073.499762-UTR-H-elongata_contig68042:2761..2947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68042 2762..2947 +
1691679686.786804-UTR-H-elongata_contig68042:2761..29471691679686.786804-UTR-H-elongata_contig68042:2761..2947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68042 2762..2947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68042.14430.1

>prot_H-elongata_contig68042.14430.1 ID=prot_H-elongata_contig68042.14430.1|Name=mRNA_H-elongata_contig68042.14430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MAITRFTNLTSPWLGTRSIPAQVYSSGSKIYTAKRPKWSASLTRTLGALH
VFVRCLATTAATHRPSPFPPPLPFYYPFLPSAGLLVFFPPVLILLVFILI
IIFFVVVVVALFLFLILLSLGPGARHTAAHSAIPRHAPTCASGETAGVAT
RANLPGFELLQHLVLLHLPHSIVDVGAR*
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mRNA from alignment at H-elongata_contig68042:2093..2947+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68042.14430.1 ID=mRNA_H-elongata_contig68042.14430.1|Name=mRNA_H-elongata_contig68042.14430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig68042:2093..2947+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATAACGCGCTTTACCAACTTGACTAGCCCCTGGCTCGGTACACG
TAGCATTCCCGCACAAGTATATTCATCAGGGAGCAAGATCTACACGGCGA
AACGTCCTAAGTGGTCTGCCTCGCTTACTCGTACGCTCGGGGCCTTGCAC
GTTTTCGTGCGGTGCCTCGCTACTACTGCTGCTACTCACCGCCCGTCGCC
TTTTCCTCCCCCGCTGCCCTTCTACTACCCCTTCCTCCCGTCCGCCGGCC
TCCTCGTCTTCTTCCCCCCCGTTCTGATCCTCCTGGTCTTCATCCTCATC
ATCATCTTCTTCGTCGTCGTCGTCGTCGCCCTCTTCCTCTTCCTCATCCT
GCTCTCGTTGGGGCCGGGTGCCCGTCACACCGCTGCCCACAGCGCCATTC
CCCGACACGCTCCTACGTGCGCCAGCGGGGAGACTGCCGGTGTCGCGACG
AGGGCGAACCTTCCCGGCTTTGAACTTCTTCAGCACCTTGTTCTCCTCCA
TCTCCCACACAGTATAGTCCTTCTTAAACGTCTTTGCCCTCTCTGTGCCA
GCCTCAACTAGTGTGTCCTCGTTGTGGCATCTGGCGACGTGGTCGGTCAT
ACCATACTTCCATATGTACGTCTCCTGAAAGCAGAAGATGCACTTCATGA
TGATGTTGGTGCACGATGAGGTGTCCGAGCCTGTCCTCGCACTTTTCAGG
CTAAGTTGGACAGCCGCATCACGTGCGTCCTTGCGAGGAGCATAGGGACA
GGTGGAGTGCATGACGGGCGCAGCCTTGCCGAATGGGACGTTGATTGTGG
TATGACATCCGAGGCCACCGCAGAAGCCGCATACAGTGCTCACCTGCATA
GCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig68042:2093..2947+

>mRNA_H-elongata_contig68042.14430.1 ID=mRNA_H-elongata_contig68042.14430.1|Name=mRNA_H-elongata_contig68042.14430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig68042:2093..2947+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATAACGCGCTTTACCAACTTGACTAGCCCCTGGCTCGGTACACG
TAGCATTCCCGCACAAGTATATTCATCAGGGAGCAAGATCTACACGGCGA
AACGTCCTAAGTGGTCTGCCTCGCTTACTCGTACGCTCGGGGCCTTGCAC
GTTTTCGTGCGGTGCCTCGCTACTACTGCTGCTACTCACCGCCCGTCGCC
TTTTCCTCCCCCGCTGCCCTTCTACTACCCCTTCCTCCCGTCCGCCGGCC
TCCTCGTCTTCTTCCCCCCCGTTCTGATCCTCCTGGTCTTCATCCTCATC
ATCATCTTCTTCGTCGTCGTCGTCGTCGCCCTCTTCCTCTTCCTCATCCT
GCTCTCGTTGGGGCCGGGTGCCCGTCACACCGCTGCCCACAGCGCCATTC
CCCGACACGCTCCTACGTGCGCCAGCGGGGAGACTGCCGGTGTCGCGACG
AGGGCGAACCTTCCCGGCTTTGAACTTCTTCAGCACCTTGTTCTCCTCCA
TCTCCCACACAGTATAGTATGGCGATAACGCGCTTTACCAACTTGACTAG
CCCCTGGCTCGGTACACGTAGCATTCCCGCACAAGTATATTCATCAGGGA
GCAAGATCTACACGGCGAAACGTCCTAAGTGGTCTGCCTCGCTTACTCGT
ACGCTCGGGGCCTTGCACGTTTTCGTGCGGTGCCTCGCTACTACTGCTGC
TACTCACCGCCCGTCGCCTTTTCCTCCCCCGCTGCCCTTCTACTACCCCT
TCCTCCCGTCCGCCGGCCTCCTCGTCTTCTTCCCCCCCGTTCTGATCCTC
CTGGTCTTCATCCTCATCATCATCTTCTTCGTCGTCGTCGTCGTCGCCCT
CTTCCTCTTCCTCATCCTGCTCTCGTTGGGGCCGGGTGCCCGTCACACCG
CTGCCCACAGCGCCATTCCCCGACACGCTCCTACGTGCGCCAGCGGGGAG
ACTGCCGGTGTCGCGACGAGGGCGAACCTTCCCGGCTTTGAACTTCTTCA
GCACCTTGTTCTCCTCCATCTCCCACACAGTATAGTTGATGTTGGTGCAC
GATGATGATGTTGGTGCACGATGA
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