mRNA_H-elongata_contig67961.14410.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 75.1 bits (183), Expect = 1.040e-13 Identity = 36/88 (40.91%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 25 EPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKYSP 288
EP + +AM+SP+W +W KA EK MR + ++ Y V ++ VVG+K +++ K +GK+E+YK RLVAQGF Q+ G+ + + ++P
Sbjct: 959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAP 1046
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 68.6 bits (166), Expect = 2.640e-12 Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 25 EPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKY 282
EP +A+ S E D+W +A E+ M + N VY V K+K V+G+K +++RK+ DG VE YK RLVAQ F Q G+ Y E +
Sbjct: 5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDETF 90
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 68.6 bits (166), Expect = 2.060e-11 Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 19 IPEPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKYSP 288
I EPIN +A EW +A + ++EN ++ V+ K K VVG+K ++K K ++G V+ YK RLVAQG+ Q EGV Y+E +SP
Sbjct: 807 INEPINMDEAFSGEHSAEWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSP 896
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 67.8 bits (164), Expect = 3.840e-11 Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 19 IPEPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKYSP 288
I EPIN +A EW +A + ++EN ++ V+ K K VVG+K ++K K ++G V+ YK RLVAQG+ Q EGV Y+E +SP
Sbjct: 720 INEPINMDEAFSGEHSAEWKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSP 809
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A224X581_9HEMI (Putative polyprotein (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224X581_9HEMI) HSP 1 Score: 67.8 bits (164), Expect = 3.880e-11 Identity = 33/86 (38.37%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 31 INRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKYSP 288
+ + A+ S E DEW+ A + ++ +++N +K V+R +D+ V+G++I+ + K DG +E K RLVAQGF Q GVH++E ++P
Sbjct: 794 VPMKSALSSSEADEWFNAMMEEIKSVIKNKTWKIVSRPEDQHVIGSRIVLRNKYKPDGTLERRKARLVAQGFSQKPGVHFSETFAP 879
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A2Z6N1U2_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N1U2_TRISU) HSP 1 Score: 67.4 bits (163), Expect = 5.290e-11 Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 25 EPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDG-KVENYKCRLVAQGFWQVEGVHYTEKYSP 288
EP N R+A ES E +W KA + M + +N +K V+ K+K VVG+K ++K+K G G + YK RLV +GF QVEG+ Y E +SP
Sbjct: 814 EPKNFRKASESMEGKDWLKAMNEEMLSLEKNQTWKLVSLPKNKRVVGSKWVFKKKEGIPGVEAPRYKARLVVKGFTQVEGIDYNEIFSP 902
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A2N5TZ29_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TZ29_9BASI) HSP 1 Score: 67.0 bits (162), Expect = 7.070e-11 Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 25 EPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKYSP 288
EP NR QAM S + D+W +AE K + M + V+ ++ RQ + + + Y++K+G D KV +K R+ AQGF Q G+++ KY+P
Sbjct: 245 EPGNRAQAMSSDDRDQWAEAELKELENMFSHSVWDKIPRQPNHHTIPSTWAYRKKLGSDNKVVEFKARICAQGFRQTHGLNFDLKYAP 332
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 67.0 bits (162), Expect = 7.230e-11 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 28 PINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDGKVENYKCRLVAQGFWQVEGVHYTEKYSP 288
P +QA ESPEW W A E+ +++ ++ +++ +VG++ ++ +K + GKV YK RLVAQGF Q+ GV YT+ YSP
Sbjct: 855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSP 941
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A438HB43_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB43_VITVI) HSP 1 Score: 65.1 bits (157), Expect = 1.170e-10 Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 25 EPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDG-KVENYKCRLVAQGFWQVEGVHYTEKYSP 288
EP ++A+ S E D+W KA ++ M + +N ++ V + KD+ VVG+K ++KRK G G + YK RLVA+GF Q EGV Y E +SP
Sbjct: 94 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSP 182
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Match: A0A6D2JNC7_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNC7_9BRAS) HSP 1 Score: 63.2 bits (152), Expect = 1.240e-10 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 28 PINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDKLVVGTKILYKRKVGQDG-KVENYKCRLVAQGFWQVEGVHYTEKYSP 288
P + QA +SP W EW A ++ +++N + + + VVG+K LY K G G +++ +KCRLVAQGF Q EGV Y E +SP
Sbjct: 4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSP 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67961.14410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67961.14410.1 >prot_H-elongata_contig67961.14410.1 ID=prot_H-elongata_contig67961.14410.1|Name=mRNA_H-elongata_contig67961.14410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MKATPYIPEPINRRQAMESPEWDEWWKAEEKNMRGMVENCVYKQVARQKDback to top mRNA from alignment at H-elongata_contig67961:3015..3302+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67961.14410.1 ID=mRNA_H-elongata_contig67961.14410.1|Name=mRNA_H-elongata_contig67961.14410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig67961:3015..3302+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67961:3015..3302+ >mRNA_H-elongata_contig67961.14410.1 ID=mRNA_H-elongata_contig67961.14410.1|Name=mRNA_H-elongata_contig67961.14410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig67961:3015..3302+ (Himanthalia elongata Himel1 dioecious)back to top |