mRNA_H-elongata_contig67933.14405.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67933.14405.1
Unique NamemRNA_H-elongata_contig67933.14405.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: D8LNV0_ECTSI (Novel protein containing IQ calmodulin-binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.820e-32
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 GEDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCLRSRVEQVRRETMGTLSEVR 279
            GED+RREKWMAKRT+EIRELTLKGLEPEIERIMDKHKAEMEE ER HH EAQ LR++ S RA E LSEER  +R RVEQ RR+ M  + E R
Sbjct:   90 GEDARREKWMAKRTQEIRELTLKGLEPEIERIMDKHKAEMEEIERGHHREAQRLRKQASLRADEALSEERARVRGRVEQARRQAMEAIGERR 181
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: UPI001886351E (centrosomal protein of 131 kDa isoform X1 n=6 Tax=Syngnathus acus TaxID=161584 RepID=UPI001886351E)

HSP 1 Score: 58.2 bits (139), Expect = 8.690e-8
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCLRS-RVEQVRRE 252
            E  RREKW+ ++T++I+E+T+KGLEPEI++++ KHK E+++    H  E  H  E+ ++R      E R+ L S + EQ RRE
Sbjct:  790 EKIRREKWIDEKTKKIKEITVKGLEPEIQKLISKHKQELKKLRTLHEAELLHAEERGAERCARQCEELRQQLESEKEEQCRRE 872
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: V3ZMG6_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZMG6_LOTGI)

HSP 1 Score: 56.2 bits (134), Expect = 2.860e-7
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCL-RSRVEQVRRE 252
            E  RREKW+  +T++I+E+T+KGLEPEI+R++ KHK+EM++ ++ H  E     E+ +QR   M  E R  L R + E  RRE
Sbjct:  100 EKLRREKWIEDKTKKIKEMTVKGLEPEIQRLIAKHKSEMKKVKQIHDAELLQADERAAQRYVTMTEELRDQLAREKEEACRRE 182
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: A0A8B6XI24_HYDVU (centrosomal protein of 131 kDa-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XI24_HYDVU)

HSP 1 Score: 55.5 bits (132), Expect = 5.250e-7
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSE---------------ERKCLRSRVEQVRRETMGTLSEVRR 282
            E  RREKW+ ++T+EI+ELT+KGLEPEI+R++ KHKAE++  +  +  E  +  E+ +Q+  + L +               ER+  R R+EQ  +E   +  + RR
Sbjct:   16 EKIRREKWIKEKTQEIKELTVKGLEPEIQRLITKHKAEIKAIKNANQTEVMNADERVAQKYMQQLDDLRAQYEIDKETAVRKERESCRERLEQQIQEEENSFQQQRR 122
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: A0A5B8MUI2_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUI2_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 5.560e-7
Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNH 144
            E +RRE W++++TREI+ELT+KGLEPEI+R++ K KA++E+ E  H
Sbjct:  434 EKARREAWLSEKTREIKELTIKGLEPEIQRLIQKSKADLEDLESKH 479
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: A0A3Q2YDB0_HIPCM (Centrosomal protein 131 n=3 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2YDB0_HIPCM)

HSP 1 Score: 55.8 bits (133), Expect = 5.610e-7
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCLRS-RVEQVRRE 252
            E  RREKW+ ++T++I+E+T+KGLEP+I++++ KHK E+++    H  E  H  E+ ++R      E R+ L + + EQ RRE
Sbjct:  621 EKIRREKWIDEKTKKIKEITVKGLEPDIQKLISKHKQELKKLRTLHEAELLHAHEQGAERCARQCEELRRQLENEKEEQCRRE 703
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: UPI001B7DA101 (E3 ubiquitin-protein ligase rnf213-beta n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7DA101)

HSP 1 Score: 55.8 bits (133), Expect = 5.800e-7
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCL-RSRVEQVRRE 252
            E  RREKW+ K+T++I+E+T+KGLEPEI++++ KHK E+++    H  E     E+ +QR      E R+ L R + EQ +RE
Sbjct: 4245 EKIRREKWIDKKTKKIKEITVKGLEPEIQKLISKHKQELQKLRAVHETELMQADERAAQRYVRQSEEMREQLEREKEEQCQRE 4327
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BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: T2M2U4_HYDVU (5-azacytidine-induced protein 1 (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M2U4_HYDVU)

HSP 1 Score: 55.5 bits (132), Expect = 7.640e-7
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSE---------------ERKCLRSRVEQVRRETMGTLSEVRR 282
            E  RREKW+ ++T+EI+ELT+KGLEPEI+R++ KHKAE++  +  +  E  +  E+ +Q+  + L +               ER+  R R+EQ  +E   +  + RR
Sbjct:  543 EKIRREKWIKEKTQEIKELTVKGLEPEIQRLITKHKAEIKAIKNANQTEVMNADERVAQKYMQQLDDLRAQYEIDKETAVRKERESCRERLEQQIQEEENSFQQQRR 649
[Close]
BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: A0A7L2G3P2_NYCGR (CP131 protein (Fragment) n=2 Tax=Nyctibius TaxID=48424 RepID=A0A7L2G3P2_NYCGR)

HSP 1 Score: 55.5 bits (132), Expect = 7.690e-7
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCL-RSRVEQVRRETMG 261
            E  RREKW+ ++T++I+ELT+KGLEPEI+++M KH+ ++ + +  H  E     E+ +QR G    E R  L R + EQ +RE  G
Sbjct:  685 EKIRREKWIDEKTKKIKELTVKGLEPEIQKLMAKHRQDIRKLKMLHEAELVQSDERAAQRYGRRAEELRGLLEREKEEQGQREXTG 770
[Close]
BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Match: A0JM70_XENTR (LOC734011 protein n=13 Tax=Xenopus TaxID=8353 RepID=A0JM70_XENTR)

HSP 1 Score: 55.1 bits (131), Expect = 1.050e-6
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 EDSRREKWMAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTSQRAGEMLSEERKCLRSRVEQV 243
            E  RREKW+ ++T++I+E+T+KGLEPEI+R++ KHK E+ + +  H  E Q   E+ +QR      E R  L    E+V
Sbjct:  690 EKVRREKWIDEKTKKIKEITVKGLEPEIQRLISKHKQEIRKLKALHEAELQQSDERAAQRYVRQTEEMRHNLEREKEEV 768
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67933.14405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNV0_ECTSI2.820e-3273.91Novel protein containing IQ calmodulin-binding mot... [more]
UPI001886351E8.690e-842.17centrosomal protein of 131 kDa isoform X1 n=6 Tax=... [more]
V3ZMG6_LOTGI2.860e-744.58Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A8B6XI24_HYDVU5.250e-735.51centrosomal protein of 131 kDa-like n=2 Tax=Hydra ... [more]
A0A5B8MUI2_9CHLO5.560e-756.52Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
A0A3Q2YDB0_HIPCM5.610e-739.76Centrosomal protein 131 n=3 Tax=Hippocampus comes ... [more]
UPI001B7DA1015.800e-742.17E3 ubiquitin-protein ligase rnf213-beta n=1 Tax=Po... [more]
T2M2U4_HYDVU7.640e-735.515-azacytidine-induced protein 1 (Fragment) n=1 Tax... [more]
A0A7L2G3P2_NYCGR7.690e-741.86CP131 protein (Fragment) n=2 Tax=Nyctibius TaxID=4... [more]
A0JM70_XENTR1.050e-641.77LOC734011 protein n=13 Tax=Xenopus TaxID=8353 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67933contigH-elongata_contig67933:241..1859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNovel protein containing IQ calmodulin-binding motif
Ec32 orthologEc-08_005750.1
Exons3
Model size282
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67933.14405.1prot_H-elongata_contig67933.14405.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67933 241..1829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.161013-CDS-H-elongata_contig67933:240..3751622931071.161013-CDS-H-elongata_contig67933:240..375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67933 241..375 -
1691679685.9109602-CDS-H-elongata_contig67933:240..3751691679685.9109602-CDS-H-elongata_contig67933:240..375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67933 241..375 -
1622931071.188129-CDS-H-elongata_contig67933:1189..12641622931071.188129-CDS-H-elongata_contig67933:1189..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67933 1190..1264 -
1691679685.9203517-CDS-H-elongata_contig67933:1189..12641691679685.9203517-CDS-H-elongata_contig67933:1189..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67933 1190..1264 -
1622931071.2045023-CDS-H-elongata_contig67933:1787..18291622931071.2045023-CDS-H-elongata_contig67933:1787..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67933 1788..1829 -
1691679685.9291234-CDS-H-elongata_contig67933:1787..18291691679685.9291234-CDS-H-elongata_contig67933:1787..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67933 1788..1829 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.2229483-UTR-H-elongata_contig67933:1829..18591622931071.2229483-UTR-H-elongata_contig67933:1829..1859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67933 1830..1859 -
1691679685.937773-UTR-H-elongata_contig67933:1829..18591691679685.937773-UTR-H-elongata_contig67933:1829..1859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67933 1830..1859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67933.14405.1

>prot_H-elongata_contig67933.14405.1 ID=prot_H-elongata_contig67933.14405.1|Name=mRNA_H-elongata_contig67933.14405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MAKRTREIRELTLKGLEPEIERIMDKHKAEMEEAERNHHHEAQHLREKTS
QRAGEMLSEERKCLRSRVEQVRRETMGTLSEVRR
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mRNA from alignment at H-elongata_contig67933:241..1859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67933.14405.1 ID=mRNA_H-elongata_contig67933.14405.1|Name=mRNA_H-elongata_contig67933.14405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1619bp|location=Sequence derived from alignment at H-elongata_contig67933:241..1859- (Himanthalia elongata Himel1 dioecious)
AAGGGAGAAGATTCGAGGAGGGAAAAGTGGATGGCAAAGAGGACACGCGA
GATTCGCGAGCTTACGCTGAAGGTGCGATACAGTCTTCTTCTCGTAGCTC
GAGAACTGCGGGTCGTTCGTCACCCTCACGTACTCCTGTTCCTTGCTCCC
AAACGCACACCTTCCCAGGGTATTAGAAAGTCTTGTGGGCGCAGGACTCA
AGGCGAGATTCACTGATGTTTGATTGACGTAAGCGACATCGAACAAATCG
TCCTAAGAAGGGGAGAGAACACGCGCGTGTTCTGCCATGAATTACTTGCG
GGTGCTATTTTTTGCCGTAGAAAAATGAACTAGACCCACTTTTAGACAAG
AGAGGTAATATATTCTATCTATAGTGGTACGGTCCGCGTAGTCCCCTCGT
TCTGCACATCACGCGACGACACCAGCTGCGCATACGTTGAAACGCTATTT
ATCGGCTTCGCCAGGGTCTACTTGCTCGGCGATAATATTGGTGACAACGA
CATGAGAAAGAAAGGAGCTTGCGTGCCACATCGCCCACGCAGGCCTCTCC
AAAGCCGGTTTTCCTTGTCCACAATATCTATCCACGGCCGTGCAGGGGCT
CGAACCAGAGATCGAAAGAATCATGGACAAGCACAAGGCTGAGATGGAAG
AGGCAGAGCGCAATCATCACGTGAGACAGTGGTGATGGGAGACAGTGGTG
ATGGGAGACAGTGAGGATGGGAGAGTAAAACCCAAATATTGCTTAGAACA
GTACCCCATGTAGCTCCTCTGTGGCGACGGCGTAGTCGTGAGTAACACAA
GTCTTGAGAAACGCGGTGATGTTATCATACGTTATACTTCTTCCAGCAGT
TATTTTTTCTTTCTATTCTTCATGATGATGCAGTGTAAAGGCGAGGAGGA
AGGGAAGTGTGGGCGGGGCATGGTGAGGACACCCTAACATCGACAAATAT
AGGAATAATTCAGCCATGAGAGGTGGATTTGACAAATCGGCCAACAAGTT
CAAGGGGGAAGCTTTCAAAACAGCCCTTCCTGAAGATGAAATTGCCCACA
TCCTTTCATGATAGGTCATAGTGCCCCAAATACAATTCATTACACAATGA
TATCTATCAAACACGATCCCTTCTAAGGCTCCTTTGATCCTCGCCCCCGT
AGAACTTGGGAACATAATCATCACCCCTCTCTTAGCAATCGAAACACAAT
TATGTAGGAACAATGATCTGTCCTCCCGGTGATGTGTGGTCAATGGCCTA
ACTGCTAAGGCATAATTAGTTGAGAGTAAGCAACCCCCTTCCCCCCAAAT
CGTTAAAATCATACACAGAGGACGCACCCCAGGATAAAATATCGACCTGA
TTGACTTCGGCTGCAAATATCTGTCCTACCCTTCCGGTTTTCTATAGCGA
CATCATCGGTGAACCTCTTACCTCAAATCGTCCAGCCTTATCTTAATTAC
CCACGCTTCGGCGACTCGACCGTTGCTGCAAAAGCACGAGGCACAACACC
TGAGAGAGAAGACATCACAACGCGCGGGTGAGATGTTGAGCGAGGAACGC
AAGTGCCTGAGGTCTAGAGTAGAGCAAGTCAGGCGCGAGACCATGGGGAC
CCTCTCAGAGGTAAGAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig67933:241..1859-

>mRNA_H-elongata_contig67933.14405.1 ID=mRNA_H-elongata_contig67933.14405.1|Name=mRNA_H-elongata_contig67933.14405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig67933:241..1859- (Himanthalia elongata Himel1 dioecious)
ATGGCAAAGAGGACACGCGAGATTCGCGAGCTTACGCTGAAGATGGCAAA
GAGGACACGCGAGATTCGCGAGCTTACGCTGAAGGGGCTCGAACCAGAGA
TCGAAAGAATCATGGACAAGCACAAGGCTGAGATGGAAGAGGCAGAGCGC
AATCATCACGGGCTCGAACCAGAGATCGAAAGAATCATGGACAAGCACAA
GGCTGAGATGGAAGAGGCAGAGCGCAATCATCACCACGAGGCACAACACC
TGAGAGAGAAGACATCACAACGCGCGGGTGAGATGTTGAGCGAGGAACGC
AAGTGCCTGAGGTCTAGAGTAGAGCAAGTCAGGCGCGAGACCATGGGGAC
CCTCTCAGAGGTAAGAAGACACGAGGCACAACACCTGAGAGAGAAGACAT
CACAACGCGCGGGTGAGATGTTGAGCGAGGAACGCAAGTGCCTGAGGTCT
AGAGTAGAGCAAGTCAGGCGCGAGACCATGGGGACCCTCTCAGAGGTAAG
AAGA
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