mRNA_H-elongata_contig67455.14355.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67455.14355.1
Unique NamemRNA_H-elongata_contig67455.14355.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: CALM_SACJA (Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CALM_SACJA)

HSP 1 Score: 152 bits (384), Expect = 1.990e-43
Identity = 78/83 (93.98%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE 249
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDA     IDFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: R4G3T4_RHOPR (Putative calmodulin (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=R4G3T4_RHOPR)

HSP 1 Score: 151 bits (382), Expect = 2.840e-43
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE--VSMGWRAYD 276
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE  +   +R +D
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 94
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: Q7SZ95_XENLA (Cam protein (Fragment) n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q7SZ95_XENLA)

HSP 1 Score: 151 bits (382), Expect = 3.320e-43
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE--VSMGWRAYD 276
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE  +   +R +D
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 94
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: A0A8D8J1U1_CULPI (Calmodulin (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8J1U1_CULPI)

HSP 1 Score: 150 bits (379), Expect = 3.720e-43
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE 249
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: A0A1V9X3G0_9ACAR (Calmodulin n=2 Tax=Dermanyssoidea TaxID=41438 RepID=A0A1V9X3G0_9ACAR)

HSP 1 Score: 151 bits (382), Expect = 4.000e-43
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE--VSMGWRAYD 276
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE  +   +R +D
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGSGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 94
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: UPI001CC3B09A (calmodulin-1-like n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC3B09A)

HSP 1 Score: 151 bits (382), Expect = 4.000e-43
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDS--EVSMGWRAYD 276
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDS  E+   +R +D
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSKEEIREAFRVFD 94
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: UPI001472226F (calmodulin-alpha-like n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001472226F)

HSP 1 Score: 151 bits (382), Expect = 4.000e-43
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE--VSMGWRAYD 276
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE  +   +R +D
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGSGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 94
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: A0A7J7R8W2_MYOMY (Calmodulin 3 n=1 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7R8W2_MYOMY)

HSP 1 Score: 150 bits (379), Expect = 4.210e-43
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE 249
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: A0A183MA14_9TREM (Calmodulin n=3 Tax=Schistosoma TaxID=6181 RepID=A0A183MA14_9TREM)

HSP 1 Score: 150 bits (379), Expect = 5.070e-43
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE 249
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
[Close]
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Match: B5G4K4_TAEGU (Putative calmodulin variant 1 n=2 Tax=Amniota TaxID=32524 RepID=B5G4K4_TAEGU)

HSP 1 Score: 151 bits (381), Expect = 5.660e-43
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXIDFPEFLTMMARKMKDTDSEVSM--GWRAYD 276
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA     IDFPEFLTMMARKMKDTDSE  +   +R +D
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFRVFD 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67455.14355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CALM_SACJA1.990e-4393.98Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CAL... [more]
R4G3T4_RHOPR2.840e-4384.04Putative calmodulin (Fragment) n=2 Tax=Bilateria T... [more]
Q7SZ95_XENLA3.320e-4384.04Cam protein (Fragment) n=1 Tax=Xenopus laevis TaxI... [more]
A0A8D8J1U1_CULPI3.720e-4392.77Calmodulin (Fragment) n=1 Tax=Culex pipiens TaxID=... [more]
A0A1V9X3G0_9ACAR4.000e-4384.04Calmodulin n=2 Tax=Dermanyssoidea TaxID=41438 RepI... [more]
UPI001CC3B09A4.000e-4384.04calmodulin-1-like n=1 Tax=Dromiciops gliroides Tax... [more]
UPI001472226F4.000e-4384.04calmodulin-alpha-like n=1 Tax=Thalassophryne amazo... [more]
A0A7J7R8W2_MYOMY4.210e-4392.77Calmodulin 3 n=1 Tax=Myotis myotis TaxID=51298 Rep... [more]
A0A183MA14_9TREM5.070e-4392.77Calmodulin n=3 Tax=Schistosoma TaxID=6181 RepID=A0... [more]
B5G4K4_TAEGU5.660e-4384.04Putative calmodulin variant 1 n=2 Tax=Amniota TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67455contigH-elongata_contig67455:784..1471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D7G3B7
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.817594-CDS-H-elongata_contig67455:783..10801622931065.817594-CDS-H-elongata_contig67455:783..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67455 784..1080 +
1691679683.7962792-CDS-H-elongata_contig67455:783..10801691679683.7962792-CDS-H-elongata_contig67455:783..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67455 784..1080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.8390243-UTR-H-elongata_contig67455:1080..14711622931065.8390243-UTR-H-elongata_contig67455:1080..1471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67455 1081..1471 +
1691679683.806853-UTR-H-elongata_contig67455:1080..14711691679683.806853-UTR-H-elongata_contig67455:1080..1471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67455 1081..1471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67455.14355.1prot_H-elongata_contig67455.14355.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67455 784..1080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67455.14355.1

>prot_H-elongata_contig67455.14355.1 ID=prot_H-elongata_contig67455.14355.1|Name=mRNA_H-elongata_contig67455.14355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELA
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEVSMGWRAYDAARGWT*
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mRNA from alignment at H-elongata_contig67455:784..1471+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67455.14355.1 ID=mRNA_H-elongata_contig67455.14355.1|Name=mRNA_H-elongata_contig67455.14355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=688bp|location=Sequence derived from alignment at H-elongata_contig67455:784..1471+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGATCAGCTTACCGAGGAGCAAATTGCCGAGTTCAAGGAAGCTTT
CTCCCTGTTCGACAAGGACGGAGACGGCACGATCACCACCAAAGAACTCG
GCACCGTAATGAGGTCTCTTGGCCAGAACCCGACCGAGGCGGAGCTGGCC
GACATGATAAATGAGGTCGATGCCGACGGGAACGGGACTATTGACTTCCC
CGAGTTCTTGACAATGATGGCGAGGAAGATGAAGGACACAGATTCCGAGG
TGAGCATGGGATGGAGGGCTTATGATGCCGCCCGGGGCTGGACCTGACTA
ATCGTGAGGTTACGTCTCGCATTAAGATTAAGGACGTATAATGCCCGAAG
CTTGCTGCCACGCACTGTCTGACTGGACTTACCTCAGCAAGAGCTGCTCG
CGATTGGACTTGCATTACATTTTTATAATGTGTTGTCTAATGCCCCGAGG
CGATCCTTCTTAAAAAAACCGATCCAATTTGCCCACTCCAATACTTGGTA
TCGACGAGACGTTTGCCCTCTTTGTTTATCACAATCGTTCGGATTTATCC
ACCGACTGCTTTTTATCTCCCTAGGGGGTGTAGGCACTTGCACAGCAAAC
CACGGCCGGCGTGAATTGAACGAAAGACCAAGGGCTGCAATCTCTGAAGC
TTAGTGCATAAATCATCAGTTCTTTCGCGAGTCCGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig67455:784..1471+

>mRNA_H-elongata_contig67455.14355.1 ID=mRNA_H-elongata_contig67455.14355.1|Name=mRNA_H-elongata_contig67455.14355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig67455:784..1471+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGATCAGCTTACCGAGGAGCAAATTGCCGAGTTCAAGGAAGCTTT
CTCCCTGTTCGACAAGGACGGAGACGGCACGATCACCACCAAAGAACTCG
GCACCGTAATGAGGTCTCTTGGCCAGAACCCGACCGAGGCGGAGCTGGCC
GACATGATAAATGAGGTCGATGCCGACGGGAACGGGACTATTGACTTCCC
CGAGTTCTTGACAATGATGGCGAGGAAGATGAAGGACACAGATTCCGAGG
TGAGCATGGGATGGAGGGCTTATGATGCCGCCCGGGGCTGGACCTGAATG
GCGGATCAGCTTACCGAGGAGCAAATTGCCGAGTTCAAGGAAGCTTTCTC
CCTGTTCGACAAGGACGGAGACGGCACGATCACCACCAAAGAACTCGGCA
CCGTAATGAGGTCTCTTGGCCAGAACCCGACCGAGGCGGAGCTGGCCGAC
ATGATAAATGAGGTCGATGCCGACGGGAACGGGACTATTGACTTCCCCGA
GTTCTTGACAATGATGGCGAGGAAGATGAAGGACACAGATTCCGAGGTGA
GCATGGGATGGAGGGCTTATGATGCCGCCCGGGGCTGGACCTGA
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