mRNA_H-elongata_contig66873.14289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66873.14289.1
Unique NamemRNA_H-elongata_contig66873.14289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: D7FKZ0_ECTSI (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.720e-29
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 QESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            +ES +RSM +LIHGDAAFAGQGVVYETMQ+SR  DFAVGG IHVIV    GFTT+P N RSTEYCSD+GKTFE+ +
Sbjct:  355 KESKQRSMSVLIHGDAAFAGQGVVYETMQLSRVNDFAVGGTIHVIVNNQVGFTTDPRNSRSTEYCSDLGKTFEIPI 430          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A835Z9M1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.250e-25
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            ES  ++M +L+HGDAAFAGQGVVYETMQ+ R  D++ GG IHVIV    GFTT+PEN RST+YCSD+GKTFE+ +
Sbjct:  372 ESKLKAMAVLLHGDAAFAGQGVVYETMQLMRVADYSTGGTIHVIVNNQVGFTTDPENDRSTDYCSDLGKTFEIPI 446          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S3DPD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPD1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.250e-25
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            E +R  +PIL+HGDAAFAGQGVVYETMQM+   DF VGG IHV+V    GFTTNP + RST YCSD+GK F   +
Sbjct:   13 EDIRNVVPILLHGDAAFAGQGVVYETMQMAHVDDFDVGGTIHVVVNNQIGFTTNPNHSRSTPYCSDLGKAFNCPI 87          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A482S454_9ARCH (2-oxoglutarate dehydrogenase E1 component (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S454_9ARCH)

HSP 1 Score: 105 bits (263), Expect = 3.610e-25
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            E  +R MP+L+HGDAAFAGQGVVYET+QM+R  DFAVGG IHVIV    GFTT+P NGRST+Y SD+ K F++ +
Sbjct:  377 EDKKRHMPVLLHGDAAFAGQGVVYETLQMARVPDFAVGGTIHVIVNNQVGFTTDPRNGRSTQYSSDLAKAFDLPI 451          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S1MLS1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MLS1_ALECA)

HSP 1 Score: 101 bits (251), Expect = 5.080e-25
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    1 QESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            +ES +R MPI++HGDA+FAGQGVVYE+MQ+    DF VGG IHVIV    GFTT+P   RSTEYCSD+GK F V +
Sbjct:   98 EESKKRVMPIIMHGDASFAGQGVVYESMQLGNVEDFDVGGTIHVIVNNQVGFTTDPRYSRSTEYCSDLGKAFGVPI 173          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A1E7FW89_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW89_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.500e-24
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            E +R  +PIL+HGDAAFAGQGVVYETMQ++   DFAVGG IHVIV    GFTTNP N RST YCSD+GK F   +
Sbjct:  410 EDVRNCVPILLHGDAAFAGQGVVYETMQLANVEDFAVGGTIHVIVNNQIGFTTNPINSRSTPYCSDLGKAFNCPI 484          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S0SW70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW70_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.650e-24
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 QESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            ++   + MP+L+HGDAAFAGQGVVYETMQMS+  D+ VGG IHVIV    GFTT+P+NGRST Y SD+GK F + +
Sbjct:  195 EQDKLKHMPVLLHGDAAFAGQGVVYETMQMSKVPDYDVGGTIHVIVNNQVGFTTDPKNGRSTLYSSDLGKAFNIPI 270          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S1ZWD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWD4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.820e-24
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            E  R  +PIL+HGDAAFAGQGVVYETMQ+++  DF VGG IHV+V    GFTTNP + RST YCSDIGK F   +
Sbjct:  104 EDTRNVVPILLHGDAAFAGQGVVYETMQLAKVPDFDVGGTIHVVVNNQIGFTTNPVHSRSTPYCSDIGKAFGAPI 178          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S0GI93_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GI93_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.010e-24
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            E +R  +PIL+HGD+AFAGQGVVYETMQM++  DF VGG IHVIV    GFTTNP N RST YC+D+GKTF+  +
Sbjct:   42 EDVRNVVPILLHGDSAFAGQGVVYETMQMAKVRDFDVGGTIHVIVNNQIGFTTNPVNSRSTPYCTDLGKTFDCPI 116          
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A448ZD84_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD84_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.220e-24
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
            E +R  +PIL+HGDAAFAGQGVVYETMQ++   DFAVGG IHVIV    G+TTNP N RST YCSD+GK F   +
Sbjct:  416 EDVRNVVPILLHGDAAFAGQGVVYETMQLANVKDFAVGGTIHVIVNNQIGYTTNPINSRSTPYCSDLGKAFNCPI 490          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKZ0_ECTSI9.720e-2973.68Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A835Z9M1_9STRA1.250e-2565.33Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S3DPD1_9STRA2.250e-2564.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A482S454_9ARCH3.610e-2565.332-oxoglutarate dehydrogenase E1 component (Fragmen... [more]
A0A7S1MLS1_ALECA5.080e-2563.16Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A1E7FW89_9STRA1.500e-2466.67Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S0SW70_9STRA1.650e-2461.84Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1ZWD4_9STRA1.820e-2464.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0GI93_9STRA2.010e-2465.33Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448ZD84_9STRA5.220e-2465.33Oxoglutarate dehydrogenase (succinyl-transferring)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66873contigH-elongata_contig66873:1876..2949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.6e-23
Seed eggNOG ortholog2880.D7FKZ0
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
EggNOG free text desc.oxoglutarate dehydrogenase (succinyl-transferring) activity
EggNOG OGsCOG0567@1,KOG0450@2759
EC1.2.4.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66873.14289.1prot_H-elongata_contig66873.14289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66873 1876..2940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.5754845-CDS-H-elongata_contig66873:1875..19561622931058.5754845-CDS-H-elongata_contig66873:1875..1956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66873 1876..1956 -
1691679680.8051236-CDS-H-elongata_contig66873:1875..19561691679680.8051236-CDS-H-elongata_contig66873:1875..1956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66873 1876..1956 -
1622931058.594863-CDS-H-elongata_contig66873:2814..29401622931058.594863-CDS-H-elongata_contig66873:2814..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66873 2815..2940 -
1691679680.824579-CDS-H-elongata_contig66873:2814..29401691679680.824579-CDS-H-elongata_contig66873:2814..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66873 2815..2940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.613648-UTR-H-elongata_contig66873:2940..29491622931058.613648-UTR-H-elongata_contig66873:2940..2949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66873 2941..2949 -
1691679680.8347366-UTR-H-elongata_contig66873:2940..29491691679680.8347366-UTR-H-elongata_contig66873:2940..2949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66873 2941..2949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66873.14289.1

>prot_H-elongata_contig66873.14289.1 ID=prot_H-elongata_contig66873.14289.1|Name=mRNA_H-elongata_contig66873.14289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIVGFTTNPE
NGRSTEYCSDIGKTFEVSV
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mRNA from alignment at H-elongata_contig66873:1876..2949-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66873.14289.1 ID=mRNA_H-elongata_contig66873.14289.1|Name=mRNA_H-elongata_contig66873.14289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig66873:1876..2949- (Himanthalia elongata Himel1 dioecious)
CAGGAATCAATGCGGCGCAGTATGCCCATCCTCATCCACGGAGACGCGGC ATTCGCGGGACAGGGGGTTGTATACGAGACAATGCAGATGTCGCGCACGG TCGACTTTGCCGTGGGGGGTGCGATCCACGTCATCGTCAACAACCAGGCG GGGCATTATTAATAGCAGCTAAATGTTCTCATGTCTGATGTGTGTATTGT GTATTCTGTACAGCGGTTAGTAGGTGAGGCTAGAGATTTCCGACCCCCGC CCCCCTCCCTGCAAACGCAATCTTGATTACTGATTACTGATTACTGCTTT TTAGGGCGTCGCTTGGCTGGACGAGGAAGCCTATTAATATAGATATATAA ATGGCATCGCTATAGCCATCGCCATCGGTATAGTGATAGCAGCAGTAGCA TTAGCAGATCTCTTAGTTTAGAGTTTAGTCTTATATCTCTGGCGATCCAT CGTGGTATAGTATGATAGTATGATGGGGCTTTCCCTTTTTTTATTAAACG TTTCCCTCTTTTCGATCTATCTCTCTATCTATCTATCTATCCCTGTACTA TACTGTAGTACAGTATATCGTGGTTCGCGGGGTAGGGGAAAATTACTATA ATAGCATGAAATGAACTGAAACGAAATCAACCGAGCTGAAACGAAACGAA ACGAAACGAAATTCCCTCCAACAAACTAACGATCCGACTCCAGCTCCGAC TCCTCTACCGTTCCAATGCAGGAGAACTGATTTATGATAGTTCCACGATC ACGCTCTTGGTAGAGACAGCTGCCGTAGAGACATTTACAGTAGCAAAGCT AGGGAATAAAGAAACAGCTCCAGTAGCAGTAGCAGCAGGGGGATATTGGG ATACCGTCTGACAAGTGGAACGTGATGCGCTTTTCCCTGCTCGCTGTATA AAAAAAACAAACGAAACGAAACGAAAATTAAATTGAAGCCGTTTCATGTT TTTGTTCAGCCTTTTTTTACTTTTTATTTTATTTTCGTTACAGGTGGGAT TTACCACAAATCCTGAAAACGGGCGCTCTACGGAGTACTGCTCGGACATA GGGAAAACCTTCGAGGTGAGCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig66873:1876..2949-

>mRNA_H-elongata_contig66873.14289.1 ID=mRNA_H-elongata_contig66873.14289.1|Name=mRNA_H-elongata_contig66873.14289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig66873:1876..2949- (Himanthalia elongata Himel1 dioecious)
ATGCGGCGCAGTATGCCCATCCTCATCCACGGAGACGCGGCATTCGCGGG
ACAGGGGGTTGTATACGAGACAATGCAGATGTCGCGCACGGTCGACTTTG
CCGTGGGGGGTGCGATCCACGTCATCATGCGGCGCAGTATGCCCATCCTC
ATCCACGGAGACGCGGCATTCGCGGGACAGGGGGTTGTATACGAGACAAT
GCAGATGTCGCGCACGGTCGACTTTGCCGTGGGGGGTGCGATCCACGTCA
TCGTGGGATTTACCACAAATCCTGAAAACGGGCGCTCTACGGAGTACTGC
TCGGACATAGGGAAAACCTTCGAGGTGAGCGTTGTGGGATTTACCACAAA
TCCTGAAAACGGGCGCTCTACGGAGTACTGCTCGGACATAGGGAAAACCT
TCGAGGTGAGCGTT
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