mRNA_H-elongata_contig66708.14274.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66708.14274.1
Unique NamemRNA_H-elongata_contig66708.14274.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66708.14274.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 4.630e-43
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:    3 IEQLQAYRENGITTLAEGTEFDLAKKRRQEELASKKHRESASYLYDGHANSKVAKGNNRDRSNRYTSRNK-----DGDGDEDGRGSNLLDLTGAPGVEFLSPAERLLCSQLHLLPGYFLVIK 353
            IE LQ YR+NGITT+AEG EFD A++RRQEELAS+KHRESASYLYDGHA+   AKGN  DR+ RY  RNK     DG+GD+   G+NLLD+ GAPGVE+LSPAER LCSQLHLLPGY+LVIK
Sbjct:  447 IETLQMYRQNGITTIAEGIEFDKARQRRQEELASQKHRESASYLYDGHAS---AKGNTGDRNRRYKDRNKGGGMSDGNGDDGRNGNNLLDVEGAPGVEYLSPAERALCSQLHLLPGYYLVIK 565
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BLAST of mRNA_H-elongata_contig66708.14274.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.560e-40
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = 3 
Query:    3 IEQLQAYRENGITTLAEGTEFDLAKKRRQEELASKKHRESASYLYDG------HANSKVAKGNNRDRSNRYTSRNKDGDGDEDGRGSN--LLDLTGAPGVEFLSPAERLLCSQLHLLPGYFLVIK 353
            IEQLQ YR+NGITTLAEG EF++AKK+RQEELASKKHRESASYLY+G        +SK    N RDR+ R ++R KDG GD  G  +N  LLD++GAPGVE+LSPAER+LCSQLHLLPGY+LVIK
Sbjct:  434 IEQLQVYRQNGITTLAEGAEFEIAKKKRQEELASKKHRESASYLYEGVGQGGSSTSSKANIRNIRDRNYRCSNRQKDGGGDGGGEANNDNLLDISGAPGVEYLSPAERVLCSQLHLLPGYYLVIK 558
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BLAST of mRNA_H-elongata_contig66708.14274.1 vs. uniprot
Match: A0A4P9ZPH0_9FUNG (Transcriptional adapter 2 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPH0_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 4.990e-5
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:    3 IEQLQAYRENGITTLAEGTEFDLAKKRRQEEL----------ASKKHRESASYLYDGHANSKVAKGNNRDRSNRYTSRNKDGDGDEDGRGSNLLDLTGAPGVEFLSPAERLLCSQLHLLPGYFLVIK 353
            I  LQ YR+NGITTL EG +F+ A+ +R + L          A+K+   S++ +  G  +  V     R  S         G      R +N L+L  A GV  LSP E+ LCS L +LP  ++VIK
Sbjct:  286 IAMLQDYRQNGITTLKEGEQFEQARHQRWQTLRAHGIKEGALAAKRVSGSSNNINGGGGDGAVVTSTARGVSTPTGGSMGVGASGGARRPANPLNLDNAEGVHLLSPEEQQLCSVLRILPRPYIVIK 412
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BLAST of mRNA_H-elongata_contig66708.14274.1 vs. uniprot
Match: K8ERC5_9CHLO (Transcriptional adapter n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ERC5_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 7.020e-5
Identity = 48/130 (36.92%), Postives = 64/130 (49.23%), Query Frame = 3 
Query:    3 IEQLQAYRENGITTLAEGTEFDLAKKRRQEELASKKHRESASYLYDGHANSKVAKGN----NRDRSNRYTS---RNKDGD---GDEDGRGSNL---LDLTGAPGVEFLSPAERLLCSQLHLLPGYFLVIK 353
            I +L+ YR NGITTL EG  +D+ KKRR EE A  K  ES      G     +A+      N+  +  + S   R+   D   G+  G    +   LDL   PGVE LS  E+ LC    +LP  FL++K
Sbjct:  356 IGELKEYRRNGITTLQEGENYDVEKKRRMEEFARLKSFESPHSRKKGFTPLPLAQAQPGDANKSSNTIFPSPGGRSLKTDHHLGNTSGSKKRMYIPLDLATLPGVELLSKQEKELCVTNRMLPVQFLMVK 485
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BLAST of mRNA_H-elongata_contig66708.14274.1 vs. uniprot
Match: A0A1Y1YFP2_9FUNG (Transcriptional adapter 2 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YFP2_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 9.240e-5
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 3 
Query:    3 IEQLQAYRENGITTLAEGTEFDLAKKRRQEELASKKHRESASYLYDGHANSKVAKGNNRDRSNRYTSRNKDGDGDEDGRGSNL----------LDLTGAPGVEFLSPAERLLCSQLHLLPGYFLVIK 353
            I +LQ YR NGITTLAE   ++  K +RQ  L     RES +                 +R +RY +R+   +     + +N           LD+  A GV  L+PAE+ +CS L +LP  ++VIK
Sbjct:  295 IAELQEYRRNGITTLAEAEVYERDKAQRQSNLKLLTGRESLAAS---------------ERLSRYAARHIPQEASPAPKAANQKMIGRKPANPLDIQEADGVHLLTPAEQTICSALRILPKAYMVIK 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66708.14274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JL08_9PHAE4.630e-4371.31Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRV7_ECTSI5.560e-4068.00Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4P9ZPH0_9FUNG4.990e-535.43Transcriptional adapter 2 n=1 Tax=Dimargaris crist... [more]
K8ERC5_9CHLO7.020e-536.92Transcriptional adapter n=1 Tax=Bathycoccus prasin... [more]
A0A1Y1YFP2_9FUNG9.240e-533.07Transcriptional adapter 2 n=1 Tax=Basidiobolus mer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66708contigH-elongata_contig66708:93..2976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size358
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66708.14274.1prot_H-elongata_contig66708.14274.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66708 93..2976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.1338131-CDS-H-elongata_contig66708:92..2371622931057.1338131-CDS-H-elongata_contig66708:92..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66708 93..237 -
1691679680.2798665-CDS-H-elongata_contig66708:92..2371691679680.2798665-CDS-H-elongata_contig66708:92..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66708 93..237 -
1622931057.1560392-CDS-H-elongata_contig66708:1315..14321622931057.1560392-CDS-H-elongata_contig66708:1315..1432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66708 1316..1432 -
1691679680.2889469-CDS-H-elongata_contig66708:1315..14321691679680.2889469-CDS-H-elongata_contig66708:1315..1432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66708 1316..1432 -
1622931057.1761844-CDS-H-elongata_contig66708:2881..29761622931057.1761844-CDS-H-elongata_contig66708:2881..2976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66708 2882..2976 -
1691679680.2974076-CDS-H-elongata_contig66708:2881..29761691679680.2974076-CDS-H-elongata_contig66708:2881..2976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66708 2882..2976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66708.14274.1

>prot_H-elongata_contig66708.14274.1 ID=prot_H-elongata_contig66708.14274.1|Name=mRNA_H-elongata_contig66708.14274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
GSSSSRLIAKTESPLWRRVRSSISRKKGARKSWRRRSTASRHPTYTTATP
TARWRRVTTATAVIATPAGTRTATGTKMAGAATSWTSPARRGWSSSLPPN
ACCAPSCTCFLVTSSSSR*
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mRNA from alignment at H-elongata_contig66708:93..2976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66708.14274.1 ID=mRNA_H-elongata_contig66708.14274.1|Name=mRNA_H-elongata_contig66708.14274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2884bp|location=Sequence derived from alignment at H-elongata_contig66708:93..2976- (Himanthalia elongata Himel1 dioecious)
GGATCGAGCAGCTCCAGGCTTATCGCGAAAACGGAATCACCACTCTGGCG
GAGGGTACGGAGTTCGATCTCGCGAAAAAAAGGCGCCAGGAAGAGGTAGG
GACGTGGGGGCATACATCAAAGCAGAGACGCACGCGCTCACACCCATGAC
CCGACATGAGTCTGTCGGGCTGTCCTGTCAAGGGATAAGATAGAAAGCTT
TGGCACGCCCCCAGCCGTATGCGGAAGATTTAGACATCCGCCATGCCATG
TAACCCACCCCAGGATACGATGCGACCTTGTAGATGATTCGTACATGCGG
GCTTGCTTTTTGATGTAGTAATGCTTTGGGGGGAAGCGAAGCGATCTATT
AATATTCGTGCCTACCTTACCCTTCTCTGGGACTGCTTGCCCCCCCCCCC
CTATCTAGCTAGTCGGGTGTAGGTTGTTGGGCTACAGGCTGTAGCAGACG
CGCGCGAATTCCAAACCGCTTATATCGCGACCTATCGAGTACAACAGCAT
CTCTCGCCCCTGGTTTTGGCGTGGTTCTTATGTCGTGGTGCAAGTCACGC
GGTAGCACAGAGTGGCGCAAAAGCGGTGGTTTGAGCTGCCGGGAGGGAAG
AGCCCAAACGTTGCCCAGGGTTGGGTGTTCCCGGAGAGGTGAATGAGCGT
TATTCCTCCGGGAAGACACTTGGTCTTCCTAGCTCACACGAGGGCGGGGG
GCGGGGGGGGGGAGACCTTGCGAAATCGCCCGACGGTCCTTTGCGTGTGT
GTCAGCTTGAGACCCTGGGGAGGGCATTTTGGTCTCCAGGCCGCGCTGGG
GGTGGGGGGGGGGGGGGGGAGACCTTGCGAAATCGCCCGACGGTCCTGCC
CACAGGAAAATCCAAGGACCGTTCTAAGTGTGAAGCCAGTAACGATGACT
AGACGCTTTGTAGTTGCTCTCTCTGACGGCCCCCGGGCTACCGCCGCGAC
AGATATCTCGAGCCTAAATTTGTCTGGAATTTTCCACTGCCGTAGGCGAC
GGAGGGTATTAATAGAGAATATTGTCGGTAACAGTTTGGGCCGAAGATCA
CTCTTACCCTTGGGTCTGTTGTATTAATGCTATTGATACTATTAATAGTA
TGGGGTAGTAGAGGTCGTATCGTAGCTTTCTCCTGAAAAGTACGAAGGGT
TTGGACCTCGAGATGAGTGTATCGTGTACCAAGTGTGTGTGTGTGTGTGT
GTGGCTGTACCACAAGGGTCGTGTGTTGTGTTGTCATGCTGCCGCTTACA
GTGGTAGTAGTGCCGCGCTGTACTCGATCGTTGCCTCGTTGCGTCATTGT
TCCGTTTCTAACCACGTCGTATAATTCCCTGTCATTTATTCCATTCGTTG
CCATAATCCTCCGGGCGTTTACGCTCGCGCCCGTTTTGGTTGCGCCTCGG
TCTCTCTAGTATATCCTGTCTGTTTTTTTAAAATATGTCTGTTTGTCTCT
CAATATATCTACCTTTCTGTCCATCTGTATATCTTCGGACTGTCTTGACT
GACTGTTTCGAACTCGTTTGCCCTTGCGTTTCGGGATAAATCAGCTGGCG
TCGAAGAAGCACCGCGAGTCGGCATCCTACCTATACGACGGCCACGCCAA
CAGCAAGGTGGCGAAGGGTAACAACCGCGACCGCAGTAATCGCTACACCA
GCAGGAACAAGGTATGACTTAGTTAGCTAGCTAGCTCGAACAGAGCTTTC
TTAATGGTACGGTTATGCCTATAATGGGGTATGGTGTATAGTGTATGGTG
TAATACGTCCCCTATGGTATTTATAGGTGTACCGTGTATGGCATATGTAG
ATACGGTGTGGTATAAAGAATTGTGAGTGTTCTCTTTTTTGTGTGTTTCT
TTTTTTTTCTTTGGAGAAGATGTCGCTTTTTCCGAGTACAGTATTTGTAT
TGTGCACTATTACTGTCGTTTCCTTTTGTATTGGAGAGTACTGTACCTTG
AACGTTTTTATCCTACTTTCCGGATTGTGTGCTTTTTTCTACCTTGTGAC
CACGGGCTGGATTTTGACATCAGCTTATTATGTGAGAATTCAATCAAAAA
TTTAAAAATAAAGTGTATGGCGTACAGTATGCATATTGTATTGTATTGTA
TACAGTATACAATTGTATACTGGATATAGAGTGCTGGTTTGAAAAATCCT
TTACAAACGTGTGCCATCCCTTCCAGATCTCGATTTTGTCGGAAAACATT
TTCCACCAAACCACCGAATCTCCTCAAGATCGAATTCTAAAACTCGCTCA
TGAAACATCTTTTAAATAAAAACAACGTGGTGTTGGAAAATATATGTATT
TGGCCAAGAGCTCGATGTTAACCATGTGTATCTAGAAAGGTGGCAGGTCA
GGGAATCTTTTCCTTTTTTTTTTATTCGAGAAGATATTTATTTCCCAACA
TTACGGTAATAATGTTAATACTGTAGTAGTTTTAGAATCGGCAGAAGGCA
GACGTGCACCGTTTTTTGTTTTTTTTTACTTTTTACTTTTTACTTAGCGC
CATGAGAGGTGTAGTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTA
CAATACTAACCTTGAGTACAAAATCTTCCACGCATGATAGATCGTAGTAA
GTTCAATTATTTATTTATTTTACGATCATTTCTAAACATTTGTCGCTATA
AAGCGCTAATCATTAGTCTCACCAGTCACTAAAAAAGTGTCACCCCTCGC
ACCGATTTTTCCACCTAAACTATCTATGTCACCCATCAGGACGGCGACGG
GGACGAAGATGGCCGGGGCAGCAACCTCTTGGACCTCACCGGCGCGCCGG
GGGTGGAGTTCCTCTCTCCCGCCGAACGCCTGTTGTGCTCCCAGCTGCAC
CTGCTTCCTGGTTACTTCCTCGTCATCAAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig66708:93..2976-

>mRNA_H-elongata_contig66708.14274.1 ID=mRNA_H-elongata_contig66708.14274.1|Name=mRNA_H-elongata_contig66708.14274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig66708:93..2976- (Himanthalia elongata Himel1 dioecious)
GGATCGAGCAGCTCCAGGCTTATCGCGAAAACGGAATCACCACTCTGGCG
GAGGGTACGGAGTTCGATCTCGCGAAAAAAAGGCGCCAGGAAGAGGGATC
GAGCAGCTCCAGGCTTATCGCGAAAACGGAATCACCACTCTGGCGGAGGG
TACGGAGTTCGATCTCGCGAAAAAAAGGCGCCAGGAAGAGCTGGCGTCGA
AGAAGCACCGCGAGTCGGCATCCTACCTATACGACGGCCACGCCAACAGC
AAGGTGGCGAAGGGTAACAACCGCGACCGCAGTAATCGCTACACCAGCAG
GAACAAGCTGGCGTCGAAGAAGCACCGCGAGTCGGCATCCTACCTATACG
ACGGCCACGCCAACAGCAAGGTGGCGAAGGGTAACAACCGCGACCGCAGT
AATCGCTACACCAGCAGGAACAAGGACGGCGACGGGGACGAAGATGGCCG
GGGCAGCAACCTCTTGGACCTCACCGGCGCGCCGGGGGTGGAGTTCCTCT
CTCCCGCCGAACGCCTGTTGTGCTCCCAGCTGCACCTGCTTCCTGGTTAC
TTCCTCGTCATCAAGGTAAGACGGCGACGGGGACGAAGATGGCCGGGGCA
GCAACCTCTTGGACCTCACCGGCGCGCCGGGGGTGGAGTTCCTCTCTCCC
GCCGAACGCCTGTTGTGCTCCCAGCTGCACCTGCTTCCTGGTTACTTCCT
CGTCATCAAGGTAA
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