mRNA_H-elongata_contig66662.14270.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: D7G2C5_ECTSI (Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2C5_ECTSI) HSP 1 Score: 169 bits (429), Expect = 3.970e-49 Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPV++CSVTTNEASQLKSQI+TLKDQIEQLLI
Sbjct: 42 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQIITLKDQIEQLLI 128
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: A0A7S2FW40_9STRA (Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2FW40_9STRA) HSP 1 Score: 163 bits (413), Expect = 9.340e-47 Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEF+V+AADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVT+NEASQLK QI T+KD IEQLLI
Sbjct: 40 ATKTLNRGISEFVVLAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTSNEASQLKDQIQTMKDNIEQLLI 126
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: A0A835Z1Z7_9STRA (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z7_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.360e-46 Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFIVMAADA+PLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVIS SVTTNEASQLK QI +LKDQIEQLLI
Sbjct: 41 ATKTLNRGISEFIVMAADADPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISASVTTNEASQLKEQIQSLKDQIEQLLI 127
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: L1I7R9_GUITC (Ribonucloprotein n=6 Tax=Cryptophyceae TaxID=3027 RepID=L1I7R9_GUITC) HSP 1 Score: 157 bits (398), Expect = 1.650e-44 Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFIVMAAD EPLEILLHLPLLCEDKNVPYVFVPSK ALGRACGVSRPVI+ SVTTNE SQLK QI TLKDQIE+LLI
Sbjct: 40 ATKTLNRGISEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKQALGRACGVSRPVIAASVTTNEGSQLKGQIQTLKDQIEKLLI 126
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: A0A7S2XVU5_9STRA (Ribonucloprotein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVU5_9STRA) HSP 1 Score: 157 bits (397), Expect = 2.800e-44 Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSK+ALGRACGVSRPVI+ S+TTNEASQLK QI KD IEQLLI
Sbjct: 46 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKIALGRACGVSRPVIAASITTNEASQLKEQIQRTKDAIEQLLI 132
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: A0A5J4Z9E3_PORPP (Ribonucloprotein n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A5J4Z9E3_PORPP) HSP 1 Score: 157 bits (396), Expect = 3.180e-44 Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSK ALGRACGVSR VI+CSVT+NE SQLKSQI+ L+DQIE+LLI
Sbjct: 39 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKQALGRACGVSRHVIACSVTSNEGSQLKSQILNLRDQIEKLLI 125
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein n=5 Tax=Saccharomycetales TaxID=4892 RepID=SNU13_YARLI) HSP 1 Score: 155 bits (393), Expect = 9.210e-44 Identity = 75/87 (86.21%), Postives = 84/87 (96.55%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFI+MAADAEP+EILLHLPLLCEDKNVPY+FVPSKVALGRACGVSRPVIS SVT+N+ASQLK QI+ +KD+IE+LLI
Sbjct: 40 ATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: M4EKZ7_BRARP (Ribonucloprotein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4EKZ7_BRARP) HSP 1 Score: 154 bits (390), Expect = 1.020e-43 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEF+VMAADAEPLEILLHLPLL EDKNVPYVFVPSK ALGRACGV+RPVI+CSVT+NEASQLKSQI LKD IE+LLI
Sbjct: 10 ATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQQLKDAIEKLLI 96
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: A0A7S1CD40_9STRA (Ribonucloprotein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD40_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.520e-43 Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISE IV+ ADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVI+CS+TTNE SQLK QI T+KD IE+LLI
Sbjct: 45 ATKTLNRGISELIVLTADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVIACSITTNEGSQLKPQINTMKDAIERLLI 131
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Match: A0A2T0FPR5_9ASCO (Ribonucloprotein n=2 Tax=Trichomonascaceae TaxID=410830 RepID=A0A2T0FPR5_9ASCO) HSP 1 Score: 155 bits (391), Expect = 1.830e-43 Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 2
Query: 2 ATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTTNEASQLKSQIMTLKDQIEQLLI 262
ATKTLNRGISEFIVMAADAEP+EI+LHLPLLCEDKNVPYVFVPSKVALGRACGVSRPV+S SVT+N+ASQLK QI LKD+IE+LLI
Sbjct: 40 ATKTLNRGISEFIVMAADAEPIEIVLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVSASVTSNDASQLKEQIYQLKDKIERLLI 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66662.14270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66662.14270.1 >prot_H-elongata_contig66662.14270.1 ID=prot_H-elongata_contig66662.14270.1|Name=mRNA_H-elongata_contig66662.14270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTback to top mRNA from alignment at H-elongata_contig66662:403..1972- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66662.14270.1 ID=mRNA_H-elongata_contig66662.14270.1|Name=mRNA_H-elongata_contig66662.14270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1570bp|location=Sequence derived from alignment at H-elongata_contig66662:403..1972- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66662:403..1972- >mRNA_H-elongata_contig66662.14270.1 ID=mRNA_H-elongata_contig66662.14270.1|Name=mRNA_H-elongata_contig66662.14270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig66662:403..1972- (Himanthalia elongata Himel1 dioecious)back to top |