mRNA_H-elongata_contig66456.14240.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: D8LED2_ECTSI (Ig-like protein, group 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED2_ECTSI) HSP 1 Score: 180 bits (457), Expect = 4.710e-52 Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 1 RWAEIITNVPCGGAFGY--PAARLLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGWV 474
RW+E++T +PC G G A L I++TLE ID GTLG+AGP G + C IS +G MTF IDDI ME TFE VILHEMGHVI GTLWG+CS C + S++W+CP +VY D + +P G+ + +IE + G+GT+ GHF E F DELMTG+V
Sbjct: 193 RWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYV 352
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI) HSP 1 Score: 183 bits (464), Expect = 3.710e-51 Identity = 86/160 (53.75%), Postives = 110/160 (68.75%), Query Frame = 1
Query: 1 RWAEIITNVPCGGAFGY--PAARLLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGWV 474
RW+EI+T++PC G G A L I++TLE ID GTLG+AGP G + C IS +G MTF IDDI ME TFE VILHEMGHVI GTLWG+CS C + GS++W+CP +VY D + +P G+ + +IE + G+GT+ GHF E F DELMTG+V
Sbjct: 467 RWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFEDELMTGFV 626
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI) HSP 1 Score: 182 bits (463), Expect = 5.880e-51 Identity = 85/160 (53.12%), Postives = 110/160 (68.75%), Query Frame = 1
Query: 1 RWAEIITNVPCGGAFGY--PAARLLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGWV 474
RW+EI+T++PC G G A L I++TLE ID GTLG+AGP G + C IS +G MTF IDDI ME TFE VILHEMGHVI GTLWG+CS C + GS++W+CP +VY D + +P G+ + ++E + G+GT+ GHF E F DELMTG+V
Sbjct: 480 RWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIVELEGGTGTSCGHFSESTFEDELMTGFV 639
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI) HSP 1 Score: 156 bits (394), Expect = 3.400e-41 Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 1
Query: 1 RWAEIITNVPCGGAFGY--PAARLLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIETDVGSG 414
RW+EI+T++PC G G A L I++TLE ID GTLG+AGP G + C IS +G MTF IDDI ME TFE VILHEMGHVI GTLWG+CS C + GS++W+CP +VY D + +P G+ + ++E + G+G
Sbjct: 571 RWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIVELEGGTG 710
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: A0A2E2UMK8_9DEIN (Uncharacterized protein n=1 Tax=Trueperaceae bacterium TaxID=2026798 RepID=A0A2E2UMK8_9DEIN) HSP 1 Score: 95.5 bits (236), Expect = 1.750e-20 Identity = 70/185 (37.84%), Postives = 89/185 (48.11%), Query Frame = 1
Query: 1 RWAEIIT----NVPCGGAFGY-----PAARLLISATLEYIDRPS-----GTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSS-------------DWQCPAVIKVYTDLLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGWV 474
RW IIT ++ A Y PA I + ++D P+ G LG AGP + GS ++VTG M F DI MEA T + VILHEMGHVI +GTLW D S G+S + P + Y +L GG +E D G+GT H DEDIF ELMTG++
Sbjct: 63 RWESIITGDLPDIDVNFAADYCGVNEPAISETIDDIIIWVDVPAIDGAGGVLGSAGPCTIRGS-NNLTVTGLMRFDSADIDNMEANGTLDEVILHEMGHVIGIGTLWDDFSFLDFSGNSIVCSYVTAFDTNPTFTGPLGVTEYNNL----GGVGDVPLEEDGGAGTKCSHIDEDIFDAELMTGYI 242
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: UPI001F3F5515 (hypothetical protein n=1 Tax=Sinirhodobacter sp. WL0062 TaxID=2907145 RepID=UPI001F3F5515) HSP 1 Score: 91.3 bits (225), Expect = 7.240e-19 Identity = 59/144 (40.97%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 64 LLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLW--GDCSTCHTDGSSDWQCPA---VIKVYTDLLSDPGGAESSL--IETDVGSGTASGHFDEDIFGDELMTGWV 474
L+I+A L+ ID G LG AGPTG+ S + G MTF D F+ ++LHEM HV+ VGTLW + T ++ + P V VYT ++ E +L +ETD GSGTA GH+DED + DELMTG++
Sbjct: 143 LVITADLDAIDGVGGILGQAGPTGIR-SDTGLPAVGEMTFDQADAVKYYNLGLFDDIVLHEMMHVMGVGTLWDYNNLVTTQVIDDNNTKKPTDDIVTSVYTGAAANLAYTEDTLLFVETDGGSGTAGGHWDEDTYKDELMTGYI 285
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: A0A511NAJ7_9DEIO (Peptidase n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511NAJ7_9DEIO) HSP 1 Score: 90.9 bits (224), Expect = 8.010e-19 Identity = 64/173 (36.99%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 1 RWAEIIT----NVPCGGAFGYPAARLLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWG-------DCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGWVYSVS 486
RW ++IT N+ GG L+I A+ ID G LG AGP + S ++ ++G M F D++ ME +VILHEMGHV+ +GTLW + + C T S + I Y L GGA S +E G+GT GH+ E IF ELMTGW + S
Sbjct: 91 RWEQVITHGLSNINDGGTI---YDDLVIKASAVAIDGVGGILGQAGPEFIRNS-NSLPLSGIMQFDSADLSNMETSGILYNVILHEMGHVLGIGTLWDYLGFLTYNAADCQTSTSIVFNKANAIAQYNAL----GGAGSVPVEDTGGAGTKCGHWRESIFDTELMTGWAEAGS 255
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: UPI001C992925 (hypothetical protein n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI001C992925) HSP 1 Score: 89.7 bits (221), Expect = 5.860e-18 Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = 1
Query: 13 IITNVPCGGAFGYPAARLLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCS-TCHTDGSSDWQC--PAVIKVYTD-----LLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGWVYSVSFM 492
I+ ++P G + I+ATLE D GTLG AGP + + TG+MTF I D + + +++V++HEM H + GTLWG T + D + P + VY DPG IETD G GTA GH+DE +F +ELMTG++ +F+
Sbjct: 215 ILADLPDAIVDGVFVDDIAITATLETNDGVGGTLGSAGPRELRDDGTLLPSTGAMTFDIADAGNLLSEGNWDAVVVHEMLHALGYGTLWGLLGLTTGSIAGGDLRFIGPNALSVYETEFPDVAAGDPGSNAGIPIETDFGPGTAGGHWDEALFENELMTGFIDDGAFL 382
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: UPI001EE173DF (pre-peptidase C-terminal domain-containing protein n=1 Tax=Methylobacterium iners TaxID=418707 RepID=UPI001EE173DF) HSP 1 Score: 89.7 bits (221), Expect = 6.490e-18 Identity = 64/162 (39.51%), Postives = 86/162 (53.09%), Query Frame = 1
Query: 1 RWAEIIT-NVP--CGGAFGYPAARLLISATLEYIDRPSGTLGYAGPTGVW-GSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSL-IETDVGSGTASGHFDEDIFGDELMTGW 471
RW E+IT ++P FG LLI A++ ID GTLG AGP + S + G M F D+ + + VILHEMGHV+ +GTLW T G++ + A + Y L GG E+ + +E D G GTA GH++EDIF ELMTG+
Sbjct: 237 RWEEVITADLPNFTSSRFG-TIDDLLIDASVTSIDGSGGTLGQAGPDELRPASAGGLPTHGIMQFDSADVAALAGNGSLLGVILHEMGHVLGLGTLWERAGL--TAGTNQYDGAAALAEYRVLT---GGNETFIPLENDGGPGTAGGHWEEDIFRSELMTGF 392
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Match: A0A1I4FEG5_9HYPH (Pre-peptidase C-terminal domain-containing protein n=2 Tax=Mesorhizobium albiziae TaxID=335020 RepID=A0A1I4FEG5_9HYPH) HSP 1 Score: 89.0 bits (219), Expect = 1.640e-17 Identity = 57/136 (41.91%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 64 LLISATLEYIDRPSGTLGYAGPTGVWGSCPTISVTGSMTFGIDDITTMEAG*TFESVILHEMGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIETDVGSGTASGHFDEDIFGDELMTGW 471
LLI A++ ID PS LG AGP + S ++ G M F D+ TM A T VILHEMGHV+ +GTLW G+ + + + Y LS A+S +ET G+GTA GH+ E +FG ELMTG+
Sbjct: 444 LLIDASVIAIDGPSNVLGRAGPDALR-SGSSLPYHGIMEFDSADMATMLANGTLVDVILHEMGHVLGLGTLWSQLGL--KSGNFQYIGESALAEYR-TLSGQANAQSVPLETGGGAGTAGGHWAESVFGGELMTGY 575 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66456.14240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66456.14240.1 >prot_H-elongata_contig66456.14240.1 ID=prot_H-elongata_contig66456.14240.1|Name=mRNA_H-elongata_contig66456.14240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp MGHVISVGTLWGDCSTCHTDGSSDWQCPAVIKVYTDLLSDPGGAESSLIEback to top mRNA from alignment at H-elongata_contig66456:1426..2980- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66456.14240.1 ID=mRNA_H-elongata_contig66456.14240.1|Name=mRNA_H-elongata_contig66456.14240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1555bp|location=Sequence derived from alignment at H-elongata_contig66456:1426..2980- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66456:1426..2980- >mRNA_H-elongata_contig66456.14240.1 ID=mRNA_H-elongata_contig66456.14240.1|Name=mRNA_H-elongata_contig66456.14240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig66456:1426..2980- (Himanthalia elongata Himel1 dioecious)back to top |