mRNA_H-elongata_contig66357.14233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66357.14233.1
Unique NamemRNA_H-elongata_contig66357.14233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: A0A6H5JFL7_9PHAE (DUF4821 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.690e-17
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   10 VREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            VR ACVEDHDDLMPV AA S+LLSATYGEFFLAD+IELQD+ENKA
Sbjct:  215 VRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKA 259
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BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: D7FYQ8_ECTSI (DUF4821 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ8_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-16
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   10 VREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            +R ACVEDHDDLMPV AA S+LLSATYGEFFLAD+IELQD+ENKA
Sbjct:  255 IRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKA 299
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BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: A0A6I9JD77_CHRAS (uncharacterized protein C20orf26 homolog n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JD77_CHRAS)

HSP 1 Score: 67.4 bits (163), Expect = 7.190e-12
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +REA VEDHDDLMP+   H  +L  TYGEFFLA++IE QD+EN A
Sbjct:  182 QLHIREARVEDHDDLMPIFMRHDTILKETYGEFFLAELIEAQDEENHA 229
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BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: G3U1T6_LOXAF (DUF4821 domain-containing protein n=1 Tax=Loxodonta africana TaxID=9785 RepID=G3U1T6_LOXAF)

HSP 1 Score: 64.3 bits (155), Expect = 1.080e-11
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +REA VEDHDDLMP+   ++ +L  TYGE+FLA++IE QD+EN A
Sbjct:   98 QLHIREARVEDHDDLMPIFMRYNTILKETYGEYFLAELIEAQDEENHA 145
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BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: UPI00196A74EF (cilia- and flagella-associated protein 61 isoform X9 n=2 Tax=Pteropus giganteus TaxID=143291 RepID=UPI00196A74EF)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +R A VEDHDDLMP+   H+ +L ATYGE+FLA++IE QD+EN A
Sbjct:  182 QLHIRRARVEDHDDLMPIFMYHNTILKATYGEYFLAELIEAQDEENHA 229
[Close]
BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: UPI00196A84B1 (cilia- and flagella-associated protein 61 isoform X7 n=1 Tax=Pteropus giganteus TaxID=143291 RepID=UPI00196A84B1)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +R A VEDHDDLMP+   H+ +L ATYGE+FLA++IE QD+EN A
Sbjct:  182 QLHIRRARVEDHDDLMPIFMYHNTILKATYGEYFLAELIEAQDEENHA 229
[Close]
BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: A0A6P3QRC0_PTEVA (cilia- and flagella-associated protein 61 isoform X6 n=14 Tax=Pteropus TaxID=9401 RepID=A0A6P3QRC0_PTEVA)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +R A VEDHDDLMP+   H+ +L ATYGE+FLA++IE QD+EN A
Sbjct:  182 QLHIRRARVEDHDDLMPIFMYHNTILKATYGEYFLAELIEAQDEENHA 229
[Close]
BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: A0A6P6D150_PTEVA (cilia- and flagella-associated protein 61 isoform X2 n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P6D150_PTEVA)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +R A VEDHDDLMP+   H+ +L ATYGE+FLA++IE QD+EN A
Sbjct:  182 QLHIRRARVEDHDDLMPIFMYHNTILKATYGEYFLAELIEAQDEENHA 229
[Close]
BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: UPI001875BDDB (cilia- and flagella-associated protein 61-like n=1 Tax=Manis pentadactyla TaxID=143292 RepID=UPI001875BDDB)

HSP 1 Score: 65.1 bits (157), Expect = 2.030e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +R+A VEDHDDLMP+   H  +L  TYGEFFLA++IE QD+EN A
Sbjct:  182 QLHIRKARVEDHDDLMPIFMHHDTVLKKTYGEFFLAELIEAQDEENHA 229
[Close]
BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Match: UPI000C9E765C (cilia- and flagella-associated protein 61 isoform X8 n=1 Tax=Equus caballus TaxID=9796 RepID=UPI000C9E765C)

HSP 1 Score: 65.9 bits (159), Expect = 2.500e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA 144
            Q  +R A VEDHDDLMP+   H  +L ATYGE+FLA++IE QD+EN A
Sbjct:  182 QLHIRRARVEDHDDLMPIFLHHDTILKATYGEYFLAELIEAQDEENHA 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66357.14233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFL7_9PHAE8.690e-1786.67DUF4821 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FYQ8_ECTSI1.190e-1684.44DUF4821 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6I9JD77_CHRAS7.190e-1262.50uncharacterized protein C20orf26 homolog n=1 Tax=C... [more]
G3U1T6_LOXAF1.080e-1158.33DUF4821 domain-containing protein n=1 Tax=Loxodont... [more]
UPI00196A74EF1.830e-1160.42cilia- and flagella-associated protein 61 isoform ... [more]
UPI00196A84B11.840e-1160.42cilia- and flagella-associated protein 61 isoform ... [more]
A0A6P3QRC0_PTEVA1.840e-1160.42cilia- and flagella-associated protein 61 isoform ... [more]
A0A6P6D150_PTEVA1.840e-1160.42cilia- and flagella-associated protein 61 isoform ... [more]
UPI001875BDDB2.030e-1160.42cilia- and flagella-associated protein 61-like n=1... [more]
UPI000C9E765C2.500e-1160.42cilia- and flagella-associated protein 61 isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66357contigH-elongata_contig66357:562..705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D7FYQ8
Preferred nameAK9
KEGG rclassRC00002
KEGG koko:K18533
KEGG ReactionR00124,R00127,R00156,R00330,R00570,R00722,R01137,R01547,R01857,R02093,R02326,R02331,R03530
KEGG Pathwayko00230,ko00240,ko01100,ko01110,ko01130,map00230,map00240,map01100,map01110,map01130
KEGG ModuleM00049,M00052,M00053
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006174,GO:0006186,GO:0006725,GO:0006753,GO:0006754,GO:0006756,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009182,GO:0009185,GO:0009186,GO:0009199,GO:0009200,GO:0009201,GO:0009202,GO:0009205,GO:0009206,GO:0009215,GO:0009216,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009987,GO:0012505,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046056,GO:0046066,GO:0046390,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0055086,GO:0061508,GO:0061565,GO:0061566,GO:0061567,GO:0061568,GO:0061569,GO:0061570,GO:0061571,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
EC2.7.4.3,2.7.4.6
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.7588603-CDS-H-elongata_contig66357:561..7051622931052.7588603-CDS-H-elongata_contig66357:561..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66357 562..705 -
1691679678.685911-CDS-H-elongata_contig66357:561..7051691679678.685911-CDS-H-elongata_contig66357:561..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66357 562..705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66357.14233.1prot_H-elongata_contig66357.14233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66357 562..705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66357.14233.1

>prot_H-elongata_contig66357.14233.1 ID=prot_H-elongata_contig66357.14233.1|Name=mRNA_H-elongata_contig66357.14233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
QRQVREACVEDHDDLMPVVAAHSNLLSATYGEFFLADIIELQDDENKA
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mRNA from alignment at H-elongata_contig66357:562..705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66357.14233.1 ID=mRNA_H-elongata_contig66357.14233.1|Name=mRNA_H-elongata_contig66357.14233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig66357:562..705- (Himanthalia elongata Himel1 dioecious)
CAACGCCAGGTTCGAGAGGCGTGTGTGGAGGATCACGACGACCTGATGCC
GGTAGTCGCGGCGCACAGCAATCTGCTCAGCGCCACGTACGGCGAGTTCT
TTTTAGCAGACATAATTGAGCTCCAAGACGATGAAAACAAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig66357:562..705-

>mRNA_H-elongata_contig66357.14233.1 ID=mRNA_H-elongata_contig66357.14233.1|Name=mRNA_H-elongata_contig66357.14233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig66357:562..705- (Himanthalia elongata Himel1 dioecious)
CAACGCCAGGTTCGAGAGGCGTGTGTGGAGGATCACGACGACCTGATGCC
GGTAGTCGCGGCGCACAGCAATCTGCTCAGCGCCACGTACGGCGAGTTCT
TTTTAGCAGACATAATTGAGCTCCAAGACGATGAAAACAAGGCACAACGC
CAGGTTCGAGAGGCGTGTGTGGAGGATCACGACGACCTGATGCCGGTAGT
CGCGGCGCACAGCAATCTGCTCAGCGCCACGTACGGCGAGTTCTTTTTAG
CAGACATAATTGAGCTCCAAGACGATGAAAACAAGGCA
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