mRNA_H-elongata_contig65940.14178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65940.14178.1
Unique NamemRNA_H-elongata_contig65940.14178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65940.14178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65940contigH-elongata_contig65940:805..1333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65940.14178.1prot_H-elongata_contig65940.14178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65940 944..1276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.9460864-UTR-H-elongata_contig65940:804..9431622931046.9460864-UTR-H-elongata_contig65940:804..943Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65940 805..943 +
1691679676.1255507-UTR-H-elongata_contig65940:804..9431691679676.1255507-UTR-H-elongata_contig65940:804..943Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65940 805..943 +
1622931046.9976-UTR-H-elongata_contig65940:1276..13331622931046.9976-UTR-H-elongata_contig65940:1276..1333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65940 1277..1333 +
1691679676.142932-UTR-H-elongata_contig65940:1276..13331691679676.142932-UTR-H-elongata_contig65940:1276..1333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65940 1277..1333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.9683974-CDS-H-elongata_contig65940:943..12761622931046.9683974-CDS-H-elongata_contig65940:943..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65940 944..1276 +
1691679676.1341996-CDS-H-elongata_contig65940:943..12761691679676.1341996-CDS-H-elongata_contig65940:943..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65940 944..1276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65940.14178.1

>prot_H-elongata_contig65940.14178.1 ID=prot_H-elongata_contig65940.14178.1|Name=mRNA_H-elongata_contig65940.14178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MINNRVGGCCCSYTPNFDESFSFPARFVVRKKGDSTVYATYMGQGTGGWI
SSFRVFHYKQSNDQTRTVYALSLSLSLYIYIPQHFPLKVITCIIDENKTR
IDPYIYMYIT*
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mRNA from alignment at H-elongata_contig65940:805..1333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65940.14178.1 ID=mRNA_H-elongata_contig65940.14178.1|Name=mRNA_H-elongata_contig65940.14178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=529bp|location=Sequence derived from alignment at H-elongata_contig65940:805..1333+ (Himanthalia elongata Himel1 dioecious)
GTAAGCAATTGGGGGGAGTAGAAAGGGAGAATAGACACGTCGGAACGGGG
AAGAAGGGTACGCATCGCATAACGTGGGCGGTTTCTAAAAGACACAAGCG
AACACAAGCATTTACTTGCACGTCGTGCATCTATTAACTATGATTAATAA
TCGCGTAGGAGGCTGTTGTTGTTCTTACACGCCAAATTTTGACGAGTCTT
TTTCGTTCCCAGCCCGATTCGTAGTCCGAAAGAAAGGTGACAGTACCGTG
TATGCGACGTATATGGGACAGGGGACAGGCGGATGGATATCTTCCTTCAG
GGTTTTCCACTATAAGCAAAGCAACGACCAAACACGCACAGTATATGCTC
TATCTCTCTCTCTCTCTCTATATATATATATCCCTCAACATTTCCCGTTA
AAGGTTATTACTTGCATAATAGACGAAAATAAAACACGGATAGATCCATA
TATATATATGTATATTACGTAAAGTAGAAAATTATCAACGACTGCTGAAC
GCATAAAACGAACCATAAGACGGATGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig65940:805..1333+

>mRNA_H-elongata_contig65940.14178.1 ID=mRNA_H-elongata_contig65940.14178.1|Name=mRNA_H-elongata_contig65940.14178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig65940:805..1333+ (Himanthalia elongata Himel1 dioecious)
ATGATTAATAATCGCGTAGGAGGCTGTTGTTGTTCTTACACGCCAAATTT
TGACGAGTCTTTTTCGTTCCCAGCCCGATTCGTAGTCCGAAAGAAAGGTG
ACAGTACCGTGTATGCGACGTATATGGGACAGGGGACAGGCGGATGGATA
TCTTCCTTCAGGGTTTTCCACTATAAGCAAAGCAACGACCAAACACGCAC
AGTATATGCTCTATCTCTCTCTCTCTCTCTATATATATATATCCCTCAAC
ATTTCCCGTTAAAGGTTATTACTTGCATAATAGACGAAAATAAAACACGG
ATAGATCCATATATATATATGTATATTACGTAAATGATTAATAATCGCGT
AGGAGGCTGTTGTTGTTCTTACACGCCAAATTTTGACGAGTCTTTTTCGT
TCCCAGCCCGATTCGTAGTCCGAAAGAAAGGTGACAGTACCGTGTATGCG
ACGTATATGGGACAGGGGACAGGCGGATGGATATCTTCCTTCAGGGTTTT
CCACTATAAGCAAAGCAACGACCAAACACGCACAGTATATGCTCTATCTC
TCTCTCTCTCTCTATATATATATATCCCTCAACATTTCCCGTTAAAGGTT
ATTACTTGCATAATAGACGAAAATAAAACACGGATAGATCCATATATATA
TATGTATATTACGTAA
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