mRNA_H-elongata_contig65636.14144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65636.14144.1
Unique NamemRNA_H-elongata_contig65636.14144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65636.14144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65636contigH-elongata_contig65636:1315..1924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006120.1
Exons1
Model size612
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.8813064-CDS-H-elongata_contig65636:1314..19231622931042.8813064-CDS-H-elongata_contig65636:1314..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65636 1315..1923 +
1691679674.369053-CDS-H-elongata_contig65636:1314..19231691679674.369053-CDS-H-elongata_contig65636:1314..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65636 1315..1923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65636.14144.1prot_H-elongata_contig65636.14144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65636 1315..1923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65636.14144.1

>prot_H-elongata_contig65636.14144.1 ID=prot_H-elongata_contig65636.14144.1|Name=mRNA_H-elongata_contig65636.14144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
ASRRASPATSATGSAMSVGSNYSPADDRSDGDATGSRIRKGRRRRQASGS
MRGVGSSTSPSWAEASEWADQLVGPDRAPAPVPVVSSSRNTPISGGTPVD
DRTPVRQRTPARSSGTPPLATGAGSRTPPLGARAPGAVAVPESSVSCPAC
SNRNAAAARTMSPTDAVDIGSAFSPNLSTSLEEAVHGQNLPCSDGAPQKW
RSP
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mRNA from alignment at H-elongata_contig65636:1315..1924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65636.14144.1 ID=mRNA_H-elongata_contig65636.14144.1|Name=mRNA_H-elongata_contig65636.14144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at H-elongata_contig65636:1315..1924+ (Himanthalia elongata Himel1 dioecious)
GCCAGTCGACGAGCAAGCCCGGCCACCTCCGCGACCGGGTCCGCGATGTC
CGTCGGCAGCAACTACTCCCCCGCCGACGACAGGTCGGATGGTGACGCTA
CTGGCAGCAGGATCAGGAAGGGAAGGCGGAGGCGGCAGGCCTCTGGGAGC
ATGCGGGGCGTGGGATCGTCCACATCTCCGTCGTGGGCGGAGGCTTCCGA
ATGGGCAGATCAGCTTGTGGGGCCGGACAGAGCGCCGGCGCCAGTACCGG
TTGTATCTTCCTCTCGAAACACACCTATTAGTGGTGGAACACCCGTGGAC
GACCGGACCCCCGTTAGGCAAAGAACTCCGGCTAGGTCCAGTGGAACTCC
ACCGCTTGCGACAGGCGCGGGCTCGCGAACGCCACCTCTTGGTGCCAGAG
CCCCTGGAGCCGTAGCCGTTCCGGAATCCAGCGTCAGCTGTCCCGCTTGC
AGCAACCGTAACGCGGCTGCGGCGCGCACAATGTCGCCGACAGACGCCGT
TGACATTGGGTCAGCTTTCTCGCCGAATCTTTCGACGTCTTTAGAAGAGG
CCGTCCACGGTCAGAATCTCCCATGCAGCGACGGGGCTCCTCAGAAATGG
CGGTCTCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig65636:1315..1924+

>mRNA_H-elongata_contig65636.14144.1 ID=mRNA_H-elongata_contig65636.14144.1|Name=mRNA_H-elongata_contig65636.14144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig65636:1315..1924+ (Himanthalia elongata Himel1 dioecious)
GCCAGTCGACGAGCAAGCCCGGCCACCTCCGCGACCGGGTCCGCGATGTC
CGTCGGCAGCAACTACTCCCCCGCCGACGACAGGTCGGATGGTGACGCTA
CTGGCAGCAGGATCAGGAAGGGAAGGCGGAGGCGGCAGGCCTCTGGGAGC
ATGCGGGGCGTGGGATCGTCCACATCTCCGTCGTGGGCGGAGGCTTCCGA
ATGGGCAGATCAGCTTGTGGGGCCGGACAGAGCGCCGGCGCCAGTACCGG
TTGTATCTTCCTCTCGAAACACACCTATTAGTGGTGGAACACCCGTGGAC
GACCGGACCCCCGTTAGGCAAAGAACTCCGGCTAGGTCCAGTGGAACTCC
ACCGCTTGCGACAGGCGCGGGCTCGCGAACGCCACCTCTTGGTGCCAGAG
CCCCTGGAGCCGTAGCCGTTCCGGAATCCAGCGTCAGCTGTCCCGCTTGC
AGCAACCGTAACGCGGCTGCGGCGCGCACAATGTCGCCGACAGACGCCGT
TGACATTGGGTCAGCTTTCTCGCCGAATCTTTCGACGTCTTTAGAAGAGG
CCGTCCACGGTCAGAATCTCCCATGCAGCGACGGGGCTCCTCAGAAATGG
CGGTCTCCTGCCAGTCGACGAGCAAGCCCGGCCACCTCCGCGACCGGGTC
CGCGATGTCCGTCGGCAGCAACTACTCCCCCGCCGACGACAGGTCGGATG
GTGACGCTACTGGCAGCAGGATCAGGAAGGGAAGGCGGAGGCGGCAGGCC
TCTGGGAGCATGCGGGGCGTGGGATCGTCCACATCTCCGTCGTGGGCGGA
GGCTTCCGAATGGGCAGATCAGCTTGTGGGGCCGGACAGAGCGCCGGCGC
CAGTACCGGTTGTATCTTCCTCTCGAAACACACCTATTAGTGGTGGAACA
CCCGTGGACGACCGGACCCCCGTTAGGCAAAGAACTCCGGCTAGGTCCAG
TGGAACTCCACCGCTTGCGACAGGCGCGGGCTCGCGAACGCCACCTCTTG
GTGCCAGAGCCCCTGGAGCCGTAGCCGTTCCGGAATCCAGCGTCAGCTGT
CCCGCTTGCAGCAACCGTAACGCGGCTGCGGCGCGCACAATGTCGCCGAC
AGACGCCGTTGACATTGGGTCAGCTTTCTCGCCGAATCTTTCGACGTCTT
TAGAAGAGGCCGTCCACGGTCAGAATCTCCCATGCAGCGACGGGGCTCCT
CAGAAATGGCGGTCTCCT
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