mRNA_H-elongata_contig65318.14121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig65318.14121.1
Unique Name	mRNA_H-elongata_contig65318.14121.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig65318.14121.1 vs. uniprot

BLAST of mRNA_H-elongata_contig65318.14121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig65318	contig	H-elongata_contig65318:937..2764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Zinc finger, CCCH-type
Ec32 ortholog	Ec-12_005080.1
Exons	2
Model size	1308
Cds size	657
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig65318.14121.1	prot_H-elongata_contig65318.14121.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig65318 937..2113 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931040.5249481-CDS-H-elongata_contig65318:936..1447	1622931040.5249481-CDS-H-elongata_contig65318:936..1447	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig65318 937..1447 +
1691679673.4017591-CDS-H-elongata_contig65318:936..1447	1691679673.4017591-CDS-H-elongata_contig65318:936..1447	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig65318 937..1447 +
1622931040.5440974-CDS-H-elongata_contig65318:1967..2113	1622931040.5440974-CDS-H-elongata_contig65318:1967..2113	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig65318 1968..2113 +
1691679673.4173658-CDS-H-elongata_contig65318:1967..2113	1691679673.4173658-CDS-H-elongata_contig65318:1967..2113	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig65318 1968..2113 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931040.5584104-UTR-H-elongata_contig65318:2113..2764	1622931040.5584104-UTR-H-elongata_contig65318:2113..2764	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig65318 2114..2764 +
1691679673.4318254-UTR-H-elongata_contig65318:2113..2764	1691679673.4318254-UTR-H-elongata_contig65318:2113..2764	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig65318 2114..2764 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig65318:937..2764+
coding sequence from alignment at H-elongata_contig65318:937..2764+

protein sequence of mRNA_H-elongata_contig65318.14121.1

>prot_H-elongata_contig65318.14121.1 ID=prot_H-elongata_contig65318.14121.1|Name=mRNA_H-elongata_contig65318.14121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
MGSCRYADRCRYSHDLNPLEDGHRANEGSGNRLNGASGAQGWGKSSFGGG
FDFGAGGGFGTSGNGLGSSQSVPNESGSGGGGFGSGGGFGSGGGFGSGGG
FGSGGGFGSGGGFGSGGGFGSGGGFGSGSGFGDGGGRAFGPGFSIIGDGG
GDGGFPPLGGTNHGSGFTSTGRAVKPEVLATWYSDESCISVEDLKAHEVA
TYKIGSIPEDPPPRRFCM*

mRNA from alignment at H-elongata_contig65318:937..2764+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig65318.14121.1 ID=mRNA_H-elongata_contig65318.14121.1|Name=mRNA_H-elongata_contig65318.14121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1828bp|location=Sequence derived from alignment at H-elongata_contig65318:937..2764+ (Himanthalia elongata Himel1 dioecious)
ATGGGCAGCTGTAGATATGCCGACAGATGTCGATACAGTCATGATCTGAA
CCCGTTGGAAGATGGACACCGAGCAAACGAAGGCAGCGGCAACCGCCTAA
ACGGCGCATCAGGTGCCCAAGGATGGGGAAAGAGTAGCTTCGGCGGGGGA
TTTGATTTTGGGGCGGGGGGAGGTTTCGGTACGAGCGGGAATGGGTTGGG
CAGCAGTCAAAGTGTGCCGAACGAAAGCGGAAGTGGGGGCGGCGGATTCG
GTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGA
TTTGGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTGG
CGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTAGCGGATTCGGTGACG
GTGGAGGCAGAGCGTTCGGTCCTGGCTTCAGCATCATTGGAGATGGAGGC
GGCGACGGTGGCTTTCCTCCGCTAGGAGGCACTAATCATGGGAGCGGATT
CACGTCGACAGGTGTATGCAACTTATGTCACTTGAAACTGGTGGCACTCA
GCTATATTGTGGCAGTAACATTGCGTCCTTTTTCCACCGTGACCTCAGCG
ACCCCTACAGAGTATGCGACGTCGGGTTTCGTTACTACAATGTAAAAGCA
GCAATTTCGCAAGAAAGCTTCATTCGCTGTTTGTCAAAGCGGTGATTCCT
AATTTGCAAGGCGGCTACCCCTTGTACTTGATATGGCTATGATGTATTTC
ATTCAATCCCGACGAGTGGCGCAGCGAAGGTAACCTACTGACGGTGCGAT
CTGCTAATAATGACATAAAACTAAATCTCTCGGTTTACAGCGGCGCTTCT
CGGTTATCAGCGTCAGACCTTCGGTACGTGGAGGAGGTTTTTAGAGAGCC
TTGTCATCTCCTAGGTGCTCGTTCTTCTAGAAAAAATGAAATCCTCCTAG
ATTATCCCTGCTTGTCTCAACTCTCAACAACGTCCCTATCGTCTTCTATC
GTCTTCTATCGTCTTGGCACTCCACGGCCAGGTAGGGCTGTGAAGCCAGA
AGTCTTGGCGACCTGGTACTCGGACGAAAGTTGTATCAGTGTCGAAGACT
TGAAGGCGCACGAGGTAGCCACGTATAAAATCGGCAGCATCCCCGAAGAT
CCGCCGCCGCGAAGATTTTGCATGTAGCTCTAGTTCTCGACGCCCGTTGG
GGGATACCACCCACCGTACCACTTGAAGCAGCAGCACTCTTAAGGATGGA
GGCGTTTCGTGGGCAGATACCGCTCGCTCGTTGGCCAGATAATACGTGCA
TGCTTAAAATATGTTGTAGAGCGCTCTAAGGAACGTCGGATGAGCTATTG
AAAAGAAAAGCCCGGGCTATGATTTCCGCCTCGAACCATGGGTACCCTCA
CCCTCATTAAACTATTATTTTTCGAATGGAGCACGCGCAATTCTAAGTCG
GCGTGAACGGGGGCCTAATCGAACGAATCGCGGCGAAAACAAATCCATAA
TTTCTATTGGACAGCTTCATCTGCCGTTCTCAGAGCGCTTCAGATTGGCA
GCAAGCGCTCACATCTTCTGCAGCTTGAGCAGTGCCATTCAATAATGTCG
CAGCAGGAAAGGCGGTGGGTGCTGGCGACGTCAAAGTCATCGACCGCTAG
GCCATGCACCTGCAGCCGAGCGCAAAATCGAGAACAACAGCACAGAGAGC
AGACTGACGCGGGACAGGACTGCCGAACCCGTCTTGCGAGACTAAATTCA
CAGGCGCGAACGAGGACAAGGAAAATTAATTTTCCCTTTTCAGCTGACCA
CGATCAGGATTAGCTACTTTATCCGGTT

Coding sequence (CDS) from alignment at H-elongata_contig65318:937..2764+

>mRNA_H-elongata_contig65318.14121.1 ID=mRNA_H-elongata_contig65318.14121.1|Name=mRNA_H-elongata_contig65318.14121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig65318:937..2764+ (Himanthalia elongata Himel1 dioecious)
ATGGGCAGCTGTAGATATGCCGACAGATGTCGATACAGTCATGATCTGAA
CCCGTTGGAAGATGGACACCGAGCAAACGAAGGCAGCGGCAACCGCCTAA
ACGGCGCATCAGGTGCCCAAGGATGGGGAAAGAGTAGCTTCGGCGGGGGA
TTTGATTTTGGGGCGGGGGGAGGTTTCGGTACGAGCGGGAATGGGTTGGG
CAGCAGTCAAAGTGTGCCGAACGAAAGCGGAAGTGGGGGCGGCGGATTCG
GTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGA
TTTGGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTGG
CGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTAGCGGATTCGGTGACG
GTGGAGGCAGAGCGTTCGGTCCTGGCTTCAGCATCATTGGAGATGGAGGC
GGCGACGGTGGCTTTCCTCCGCTAGGAGGCACTAATCATGGGAGCGGATT
CACGTCGACAGATGGGCAGCTGTAGATATGCCGACAGATGTCGATACAGT
CATGATCTGAACCCGTTGGAAGATGGACACCGAGCAAACGAAGGCAGCGG
CAACCGCCTAAACGGCGCATCAGGTGCCCAAGGATGGGGAAAGAGTAGCT
TCGGCGGGGGATTTGATTTTGGGGCGGGGGGAGGTTTCGGTACGAGCGGG
AATGGGTTGGGCAGCAGTCAAAGTGTGCCGAACGAAAGCGGAAGTGGGGG
CGGCGGATTCGGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTT
CGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTT
GGTTCGGGTGGCGGATTTGGTTCGGGTGGCGGATTTGGTTCGGGTAGCGG
ATTCGGTGACGGTGGAGGCAGAGCGTTCGGTCCTGGCTTCAGCATCATTG
GAGATGGAGGCGGCGACGGTGGCTTTCCTCCGCTAGGAGGCACTAATCAT
GGGAGCGGATTCACGTCGACAGGTAGGGCTGTGAAGCCAGAAGTCTTGGC
GACCTGGTACTCGGACGAAAGTTGTATCAGTGTCGAAGACTTGAAGGCGC
ACGAGGTAGCCACGTATAAAATCGGCAGCATCCCCGAAGATCCGCCGCCG
CGAAGATTTTGCATGTAGGTAGGGCTGTGAAGCCAGAAGTCTTGGCGACC
TGGTACTCGGACGAAAGTTGTATCAGTGTCGAAGACTTGAAGGCGCACGA
GGTAGCCACGTATAAAATCGGCAGCATCCCCGAAGATCCGCCGCCGCGAA
GATTTTGCATGTAG