mRNA_H-elongata_contig65155.14106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65155.14106.1
Unique NamemRNA_H-elongata_contig65155.14106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: D8LNQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ9_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.960e-38
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 1
Query:   13 QDGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            Q+ RD GL+G +TQPA LS  FS+F++D V W+VLP L+PVWIGM+ VVAFSS+LDVAAIEIDMGEPLDTNKEL TVGWSN+LSGLTGGFTG
Sbjct:  211 QNARDVGLIGAITQPAELSWSFSLFRFDRVHWTVLPGLMPVWIGMIFVVAFSSSLDVAAIEIDMGEPLDTNKELNTVGWSNILSGLTGGFTG 302          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A7R9YCC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCC1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.170e-28
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 GGVEQDGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            G    + R +G +    +PA    V  +F+W LV WS LPE  P+W+GM+ VV+FSS LDVAAIE+DMG+PL+ N+EL TVGWSN+LSGLTGGF+G
Sbjct:  254 GSTLDEARSFGWLENSMEPADPKDVAGLFQWSLVQWSALPEEFPIWLGMVFVVSFSSCLDVAAIEMDMGKPLNKNRELLTVGWSNILSGLTGGFSG 349          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A835ZH57_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH57_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.720e-27
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   13 QDGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            QD R  GLVG   + A  S  F +F+   V W VLP +LPVW GM++VVAFSS+LDVAAIE+DMGEPL+TN EL+ VGWSN +SGLTGGF G
Sbjct:  281 QDARAAGLVGAEREAALWSDAFELFQLGEVQWHVLPYVLPVWAGMVVVVAFSSSLDVAAIEMDMGEPLETNVELQVVGWSNAISGLTGGFPG 372          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A329SHQ0_9STRA (Sulfate_transp domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SHQ0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.800e-26
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   16 DGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            D RD G + PVT PA ++ + ++F + LV WS LP+    WIGM+ +VAF S LD+AAIE+DM + LD N+EL TVGWSN++SGL GG+TG
Sbjct:    3 DARDGGWIEPVTDPATVTDLINLFDFSLVHWSELPKQFGTWIGMVFIVAFGSCLDIAAIELDMDKKLDFNQELNTVGWSNVVSGLLGGYTG 93          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A6A3PCS2_9STRA (Sulfate_transp domain-containing protein (Fragment) n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PCS2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.550e-26
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 GGVEQD-GRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            GG+  D  RD G + P   PA +S + ++F +  V W  LP+    WIGM+ +VAFSS LD+AAIE+DMG+ LD N ELKTVGWSN++SGL GG+TG
Sbjct:  102 GGISMDDARDGGWIDPAKDPATVSELLNLFDFSQVHWGQLPKQFATWIGMVFIVAFSSCLDIAAIELDMGKKLDFNHELKTVGWSNVVSGLLGGYTG 198          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A6G0XHI6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHI6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.930e-25
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   16 DGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            D R YG VGP+T  A  S + S+F +  V WSVLP  +  WIGM  VVAF S LDVAAIE+DMG+ LD N EL +VGWSN +SGL GG+TG
Sbjct:  286 DARQYGWVGPMTPDANFSDMLSLFSFKDVQWSVLPSQITTWIGMTFVVAFGSCLDVAAIEMDMGQKLDLNHELTSVGWSNFVSGLLGGYTG 376          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A425CDS3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CDS3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.640e-25
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 GGVEQD-GRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            GG+  D  RD G +GP   P  +S +  +F + LV W  LP+ L  W+GM  +V+FSS LD+AAIE+DMG+ LD N ELKTVGWSN++SGL GG+TG
Sbjct:  276 GGISMDDARDGGWIGPAKDPVTVSELIGLFDFSLVHWDQLPKQLGTWVGMAFIVSFSSCLDIAAIELDMGKKLDFNHELKTVGWSNVVSGLLGGYTG 372          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A3M6VTI6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTI6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.740e-25
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 GGVEQD-GRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            GG+  D  RD G +GP   P  +S +  +F + LV W  LP+ L  W+GM  +V+FSS LD+AAIE+DMG+ LD N ELKTVGWSN++SGL GG+TG
Sbjct:  276 GGISMDDARDGGWIGPAKDPVTVSELIGLFDFSLVHWDQLPKQLGTWVGMAFIVSFSSCLDIAAIELDMGKKLDFNHELKTVGWSNVVSGLLGGYTG 372          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A2D4BJN5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJN5_PYTIN)

HSP 1 Score: 107 bits (268), Expect = 3.590e-25
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 GGVEQDGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            G   QD R YG V P   PA +  ++ +F ++LV WS+LP+ +  W+GM+ VVAFSS LDVAAIE+DMG+ LD N EL +VGWSN +SG+ GG+TG
Sbjct:  235 GATVQDARGYGWVAPDAPPATILEMWDLFDFELVYWSMLPKQITTWLGMVFVVAFSSCLDVAAIEMDMGKRLDINHELSSVGWSNFVSGIFGGYTG 330          
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Match: A0A225V7Y6_9STRA (Sulfate Permease n=2 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V7Y6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.600e-25
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 GGVEQD-GRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGMLLVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTG 288
            GG+  D  RD G + P   PA +S +F +F ++   W  LP+ L  WIGM+ +VAFSS LD+AAIE+DMG  LD N ELKTVGWSN++SGL GG+TG
Sbjct:  278 GGISMDDARDGGWIDPAKDPATISELFHLFDFNKAHWEQLPKQLGTWIGMVFIVAFSSCLDIAAIELDMGSKLDFNHELKTVGWSNVVSGLLGGYTG 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65155.14106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNQ9_ECTSI3.960e-3876.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YCC1_9STRA5.170e-2856.25Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835ZH57_9STRA4.720e-2763.04Cyclic nucleotide-binding domain-containing protei... [more]
A0A329SHQ0_9STRA1.800e-2654.95Sulfate_transp domain-containing protein n=1 Tax=P... [more]
A0A6A3PCS2_9STRA4.550e-2653.61Sulfate_transp domain-containing protein (Fragment... [more]
A0A6G0XHI6_9STRA1.930e-2559.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A425CDS3_9STRA2.640e-2553.61Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A3M6VTI6_9STRA2.740e-2553.61Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2D4BJN5_PYTIN3.590e-2554.17Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A225V7Y6_9STRA3.600e-2554.64Sulfate Permease n=2 Tax=Phytophthora megakarya Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65155contigH-elongata_contig65155:2575..3090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.7e-32
Seed eggNOG ortholog2880.D8LNQ9
KEGG koko:K03321
KEGG TC2.A.53.3
EggNOG free text desc.secondary active sulfate transmembrane transporter activity
EggNOG OGsCOG0659@1,KOG0236@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.3469453-CDS-H-elongata_contig65155:2574..27731622931038.3469453-CDS-H-elongata_contig65155:2574..2773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65155 2575..2773 +
1691679672.413805-CDS-H-elongata_contig65155:2574..27731691679672.413805-CDS-H-elongata_contig65155:2574..2773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65155 2575..2773 +
1622931038.3652327-CDS-H-elongata_contig65155:2995..30901622931038.3652327-CDS-H-elongata_contig65155:2995..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65155 2996..3090 +
1691679672.4294877-CDS-H-elongata_contig65155:2995..30901691679672.4294877-CDS-H-elongata_contig65155:2995..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65155 2996..3090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65155.14106.1prot_H-elongata_contig65155.14106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65155 2575..3090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65155.14106.1

>prot_H-elongata_contig65155.14106.1 ID=prot_H-elongata_contig65155.14106.1|Name=mRNA_H-elongata_contig65155.14106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
GGVEQDGRDYGLVGPVTQPARLSAVFSMFKWDLVDWSVLPELLPVWIGML
LVVAFSSTLDVAAIEIDMGEPLDTNKELKTVGWSNLLSGLTGGFTGR*
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mRNA from alignment at H-elongata_contig65155:2575..3090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65155.14106.1 ID=mRNA_H-elongata_contig65155.14106.1|Name=mRNA_H-elongata_contig65155.14106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig65155:2575..3090+ (Himanthalia elongata Himel1 dioecious)
GGGGGTGTTGAGCAGGATGGTCGAGACTACGGGTTGGTGGGTCCGGTCAC TCAGCCGGCAAGATTATCGGCGGTATTTAGCATGTTCAAGTGGGACTTGG TGGACTGGTCTGTCCTTCCCGAGCTCCTCCCCGTATGGATCGGCATGCTG CTTGTTGTCGCCTTCAGCTCCACCCTCGATGTCGCCGCCATCGAGATAGG TACATATTGTGATAGGTTGATAGGTTGACTATAAAAGCACGTTAGTGATA ATTCTTTTGAGTATAGGTTACCTTTCTAGCCTGGCGCTAACGTCAGAGGG CATCATATACCGGTCGAAAGTGACAATATGCGTTTAATAACGAATGTCGA ACCGTTATTCAACTTTCAACTCAAATGAGTCCCGGCCAAACCATTGCATG CGTTACCGCCGAGTGTGTCAGACATGGGCGAGCCGCTCGACACGAACAAG GAGCTCAAGACGGTGGGCTGGTCCAATCTCTTGAGCGGCCTCACGGGAGG TTTCACTGGAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig65155:2575..3090+

>mRNA_H-elongata_contig65155.14106.1 ID=mRNA_H-elongata_contig65155.14106.1|Name=mRNA_H-elongata_contig65155.14106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig65155:2575..3090+ (Himanthalia elongata Himel1 dioecious)
GGGGGTGTTGAGCAGGATGGTCGAGACTACGGGTTGGTGGGTCCGGTCAC
TCAGCCGGCAAGATTATCGGCGGTATTTAGCATGTTCAAGTGGGACTTGG
TGGACTGGTCTGTCCTTCCCGAGCTCCTCCCCGTATGGATCGGCATGCTG
CTTGTTGTCGCCTTCAGCTCCACCCTCGATGTCGCCGCCATCGAGATAGG
GGGGTGTTGAGCAGGATGGTCGAGACTACGGGTTGGTGGGTCCGGTCACT
CAGCCGGCAAGATTATCGGCGGTATTTAGCATGTTCAAGTGGGACTTGGT
GGACTGGTCTGTCCTTCCCGAGCTCCTCCCCGTATGGATCGGCATGCTGC
TTGTTGTCGCCTTCAGCTCCACCCTCGATGTCGCCGCCATCGAGATAGAC
ATGGGCGAGCCGCTCGACACGAACAAGGAGCTCAAGACGGTGGGCTGGTC
CAATCTCTTGAGCGGCCTCACGGGAGGTTTCACTGGAAGGTGAACATGGG
CGAGCCGCTCGACACGAACAAGGAGCTCAAGACGGTGGGCTGGTCCAATC
TCTTGAGCGGCCTCACGGGAGGTTTCACTGGAAGGTGA
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