mRNA_H-elongata_contig65088.14095.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A6H5JB66_9PHAE (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB66_9PHAE) HSP 1 Score: 139 bits (349), Expect = 7.910e-38 Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
I+VPVVPGLMCINA+GGFKKMT FC TRVP ELM+KME+IK+DEKAVKAFGV+ G EMC A+L GAPG HFYTLNLEKV+
Sbjct: 251 IEVPVVPGLMCINAYGGFKKMTGFCLTRVPPELMAKMEEIKEDEKAVKAFGVDHGEEMCKALLAAGAPGLHFYTLNLEKVT 331
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S0FPW1_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FPW1_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.190e-33 Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
ID P++PGLMCINA+ GFKKM FCKTRVP L KME +KDD+ AVK FG+E+GAE+C +LD GA G HFYTLNLEKV
Sbjct: 93 IDCPIIPGLMCINAYAGFKKMVGFCKTRVPPSLEEKMESMKDDKDAVKQFGIEYGAEVCQKLLDAGACGLHFYTLNLEKV 172
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S0GG49_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GG49_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.460e-31 Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
I P++PGLMCINA+GGFKKMT FC+TRVP EL KME IKD A+K FGV++G E C ++DGG G HFYTLNLE+V
Sbjct: 262 ITCPIIPGLMCINAYGGFKKMTQFCRTRVPVELSEKMESIKDSSSAIKEFGVQYGIESCQKLIDGGVKGLHFYTLNLERV 341
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A836C869_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C869_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.240e-30 Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
I PV+PG+MCINA+ GF +MT CKTRVP EL +ME IKDD+ A+KAFGVE+G E+C A+L GAP HFYTLNLEKV+
Sbjct: 252 ITAPVIPGIMCINAYAGFHRMTGLCKTRVPPELRKRMEAIKDDDAAIKAFGVEYGEELCRALLKHGAPVLHFYTLNLEKVT 332
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S2W9Q8_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W9Q8_9STRA) HSP 1 Score: 119 bits (297), Expect = 4.570e-30 Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
I P++PGLMCINA+ GFKKM FCKTRVP L ME +KDD AVK+FGVE+GAE+C A++D G G HFYTLNLEKV
Sbjct: 260 ITCPIIPGLMCINAYPGFKKMAQFCKTRVPKALEETMESLKDDAAAVKSFGVEYGAEVCQALIDFGVDGLHFYTLNLEKV 339
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A448YVV1_9STRA (Methylenetetrahydrofolate reductase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YVV1_9STRA) HSP 1 Score: 118 bits (296), Expect = 4.860e-30 Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
ID P+VPGLMCINA+ GF KMT FCKTRVP+EL +KM+ +KDD A+KAFG+EFG +MC +++ G HFYTLNLEK +
Sbjct: 247 IDCPIVPGLMCINAYAGFVKMTKFCKTRVPTELRAKMDSLKDDSDAIKAFGIEFGTQMCQDLIEIGVDVLHFYTLNLEKTT 327
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S2M8D3_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8D3_9STRA) HSP 1 Score: 118 bits (295), Expect = 7.070e-30 Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
I+ PVVPGLMCINA+ GFKKMT FCKTRVP L KM+ +KDD A+K FGVE+GAE+C +LD G HFYTLNLEKV
Sbjct: 251 INCPVVPGLMCINAYPGFKKMTKFCKTRVPKALEEKMDSMKDDADAIKKFGVEYGAEVCRTLLDSGVKILHFYTLNLEKV 330
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: K0TG67_THAOC (Methylenetetrahydrofolate reductase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TG67_THAOC) HSP 1 Score: 117 bits (292), Expect = 1.950e-29 Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
I+ PVVPGLMCINA+ GFKKMT FCKTRVP +L KM+ +KDD AVK FGV FG+E+C ++LD G HFYTLNLEKV
Sbjct: 251 INCPVVPGLMCINAYPGFKKMTKFCKTRVPKDLGEKMDAMKDDPDAVKKFGVTFGSEICRSLLDSGVEILHFYTLNLEKV 330
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A1E7FKZ6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKZ6_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.660e-29 Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
I+ PVVPGLMCINA+ GF KMT FCKTRVP+EL +KM+ IKDD AVKAFG+EFG +MC + + G HFYTLNLEK +
Sbjct: 240 INCPVVPGLMCINAYAGFVKMTGFCKTRVPAELRAKMDSIKDDPDAVKAFGIEFGIQMCQDLTEIGVEVLHFYTLNLEKTT 320
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S4N970_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N970_9STRA) HSP 1 Score: 115 bits (289), Expect = 5.350e-29 Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
I PVVPGLMCINA+ GF KMT FCKTRV +L KME +KDD A+KAFGV+FG E+C + + GAP HFYTLNLEKV
Sbjct: 244 IACPVVPGLMCINAYPGFTKMTKFCKTRVTKDLRDKMESLKDDVAAIKAFGVQFGTELCRDLTEAGAPVLHFYTLNLEKV 323 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65088.14095.1 >prot_H-elongata_contig65088.14095.1 ID=prot_H-elongata_contig65088.14095.1|Name=mRNA_H-elongata_contig65088.14095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp MCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCback to top mRNA from alignment at H-elongata_contig65088:231..1252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65088.14095.1 ID=mRNA_H-elongata_contig65088.14095.1|Name=mRNA_H-elongata_contig65088.14095.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1022bp|location=Sequence derived from alignment at H-elongata_contig65088:231..1252+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65088:231..1252+ >mRNA_H-elongata_contig65088.14095.1 ID=mRNA_H-elongata_contig65088.14095.1|Name=mRNA_H-elongata_contig65088.14095.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig65088:231..1252+ (Himanthalia elongata Himel1 dioecious)back to top |