mRNA_H-elongata_contig64971.14085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64971.14085.1
Unique NamemRNA_H-elongata_contig64971.14085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: D8LII4_ECTSI (ATP phosphoribosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LII4_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.010e-54
Identity = 83/108 (76.85%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:    1 PERVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYDSPDNPT 324
            P RVDIAQC DLPVTLVFLPAHDIAMFVGEG+VD+GITGLDVV+ET D+SEI++ M+L FG C+LCVQAPV++ I DVK L+GKRIVTSFP +CK FFD+YD+PDNPT
Sbjct:   44 PARVDIAQCSDLPVTLVFLPAHDIAMFVGEGNVDIGITGLDVVKETSDDSEIEVAMELGFGKCRLCVQAPVSAGITDVKTLSGKRIVTSFPAVCKAFFDQYDTPDNPT 151
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: A0A835Z6A7_9STRA (ATP phosphoribosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.290e-41
Identity = 68/101 (67.33%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 PERVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKY 303
            P R+DIA+C+ LPVTLVFLPAHDIA +VGEG+VD+GITG DV+QE+ +   ++ VM+L FG C+LCVQAPV S IKDV  LAGKRIVTSFP L K+FFD++
Sbjct:   44 PPRLDIAECKGLPVTLVFLPAHDIATYVGEGNVDLGITGYDVLQESGEGDNVETVMELGFGKCRLCVQAPVTSAIKDVSVLAGKRIVTSFPHLTKKFFDQF 144
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: L1JRY3_GUITC (ATP phosphoribosyltransferase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JRY3_GUITC)

HSP 1 Score: 140 bits (352), Expect = 9.960e-39
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 PERVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDES-EIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYDS 309
            PER+DIA C DLPVTLVFLPAHDIA +V EG+VDMGITG+DV++ET  ++ ++ IV KL FG CKL VQAP A  +KD   LAGKR+VTSFP + +++F KY++
Sbjct:   38 PERLDIAHCTDLPVTLVFLPAHDIATYVAEGNVDMGITGMDVIEETEPQNKDLSIVAKLGFGQCKLAVQAPAAEGLKDASVLAGKRVVTSFPAIAEKYFSKYEN 141
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: A0A7S1VMG5_9STRA (ATP phosphoribosyltransferase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMG5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 8.740e-38
Identity = 62/100 (62.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    7 RVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYD 306
            R+D+A C  LP+TLVFLPA DIA +VGEG+VD+GITG+D+V+E+  + ++D +M+L FG C+LCVQAPV S I DV  LAGKRIVTSFP + + FF KYD
Sbjct:   22 RLDVALCVGLPITLVFLPASDIAKYVGEGNVDIGITGMDIVEES--QVQVDQIMELGFGKCRLCVQAPVKSEIMDVSALAGKRIVTSFPDVTRAFFKKYD 119
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: A0A1E7FBF6_9STRA (ATP phosphoribosyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBF6_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.570e-37
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    7 RVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYD 306
            R+D+A C  LP+TL+FLPA DIA FVGEG+VD+GITG D+V+E     E+D +M+L FG CKLCVQAPV  NI DV+ LAGKRIVTSFP + K+FF  YD
Sbjct:   42 RLDVALCVGLPITLIFLPAADIAKFVGEGNVDLGITGEDIVKENM--VEVDTIMELGFGKCKLCVQAPVTDNITDVESLAGKRIVTSFPDITKQFFQTYD 139
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: B8C4E1_THAPS (ATP phosphoribosyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4E1_THAPS)

HSP 1 Score: 134 bits (338), Expect = 1.100e-36
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    7 RVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYD 306
            R+DIA C+DLP+T+VFLPA DI  +VGEG+VD+G+TG+D+V+E  +  E++ VM L FG C+LCVQAPVA  I DVKELAG RIVTSFP+L K+FFD  D
Sbjct:   39 RLDIAICKDLPMTMVFLPASDIPKYVGEGNVDIGVTGIDIVEE--NGLEVERVMDLGFGKCRLCVQAPVAKGITDVKELAGSRIVTSFPELTKKFFDPLD 136
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: B7FST0_PHATC (ATP phosphoribosyltransferase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST0_PHATC)

HSP 1 Score: 134 bits (338), Expect = 1.210e-36
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    7 RVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYD 306
            R+D+A C DLP+TLVFLPA DIA +VGEG++D+GITGLD+V+E+  + E+D VM L FG CKLCVQ P   NI DV  LAGKRIVTSFP+L K+FF  +D
Sbjct:   42 RLDVALCVDLPITLVFLPASDIAKYVGEGNIDLGITGLDIVKES--QVEVDHVMDLGFGKCKLCVQVPSDDNITDVSTLAGKRIVTSFPELTKQFFQPFD 139
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: A0A7S1CZZ3_CYCTE (ATP phosphoribosyltransferase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZZ3_CYCTE)

HSP 1 Score: 134 bits (336), Expect = 3.690e-36
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    7 RVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYD 306
            R+D+A C+DLP+TLVFLPA DIA +VGEG+VD+GITG+DV++E+    E+D V+ L FG CKLCVQAP A+ I DV  LAG RIVTSFP L ++FF KYD
Sbjct:   61 RLDVALCKDLPITLVFLPAADIAKYVGEGNVDIGITGMDVIKESF--VEVDHVLDLGFGKCKLCVQAPAANKITDVSMLAGGRIVTSFPDLTRDFFKKYD 158
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: A0A7S3L7K5_9STRA (ATP phosphoribosyltransferase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7K5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.310e-35
Identity = 67/108 (62.04%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    7 RVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIV--MKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYDSPDNPT 324
            R+D+A C DLP+TLVFLPA DIA +VGEG+VD+GITG DVVQE    S++D+V  M L FG CKLCVQAPV   I DVK+LAGKRIVTSFP + K++F   D+    T
Sbjct:   42 RLDVALCVDLPITLVFLPAADIAKYVGEGNVDIGITGWDVVQE----SQVDVVKIMDLGFGKCKLCVQAPVVDEITDVKQLAGKRIVTSFPDITKQYFAAMDAEQGTT 145
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BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Match: A0A7S0F4S4_9STRA (ATP phosphoribosyltransferase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F4S4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.080e-35
Identity = 66/107 (61.68%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:    4 ERVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDESEIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDKYDSPDNPT 324
            +R+D+A C  LP+TLVFLPA DIA FVGEG+VDMGITG DVV E+     +D +M L FG CKLCVQAPV  +I DV  LAG RIVTSFP++ KEFF K D+    T
Sbjct:   47 DRLDVALCVGLPITLVFLPAADIAKFVGEGNVDMGITGFDVVTES--GVTVDHIMDLGFGKCKLCVQAPVVDDIHDVNTLAGGRIVTSFPEITKEFFKKIDAEKGTT 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64971.14085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LII4_ECTSI2.010e-5476.85ATP phosphoribosyltransferase n=2 Tax=Ectocarpus T... [more]
A0A835Z6A7_9STRA4.290e-4167.33ATP phosphoribosyltransferase n=1 Tax=Tribonema mi... [more]
L1JRY3_GUITC9.960e-3962.50ATP phosphoribosyltransferase n=2 Tax=Guillardia t... [more]
A0A7S1VMG5_9STRA8.740e-3862.00ATP phosphoribosyltransferase (Fragment) n=1 Tax=G... [more]
A0A1E7FBF6_9STRA8.570e-3764.00ATP phosphoribosyltransferase n=1 Tax=Fragilariops... [more]
B8C4E1_THAPS1.100e-3664.00ATP phosphoribosyltransferase n=1 Tax=Thalassiosir... [more]
B7FST0_PHATC1.210e-3664.00ATP phosphoribosyltransferase n=3 Tax=Phaeodactylu... [more]
A0A7S1CZZ3_CYCTE3.690e-3664.00ATP phosphoribosyltransferase n=1 Tax=Cyclophora t... [more]
A0A7S3L7K5_9STRA1.310e-3562.04ATP phosphoribosyltransferase n=1 Tax=Amphora coff... [more]
A0A7S0F4S4_9STRA6.080e-3561.68ATP phosphoribosyltransferase n=1 Tax=Craspedostau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64971contigH-elongata_contig64971:2149..2901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue1.7e-43
Seed eggNOG ortholog2880.D8LII4
Preferred nameHIS1
KEGG rclassRC02819,RC03200
KEGG koko:K00765,ko:K08736
KEGG ReactionR01071
KEGG Pathwayko00340,ko01100,ko01110,ko01230,ko01524,ko03430,ko05200,ko05210,map00340,map01100,map01110,map01230,map01524,map03430,map05200,map05210
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.ATP phosphoribosyltransferase activity
EggNOG OGsCOG0040@1,KOG2831@2759
Ec32 ortholog descriptionATP phosphoribosyltransferase
Ec32 orthologEc-18_003520.1
EC2.4.2.17
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.4514472-CDS-H-elongata_contig64971:2148..23161622931035.4514472-CDS-H-elongata_contig64971:2148..2316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64971 2149..2316 +
1691679671.1650798-CDS-H-elongata_contig64971:2148..23161691679671.1650798-CDS-H-elongata_contig64971:2148..2316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64971 2149..2316 +
1622931035.6845345-CDS-H-elongata_contig64971:2744..29001622931035.6845345-CDS-H-elongata_contig64971:2744..2900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64971 2745..2900 +
1691679671.1880362-CDS-H-elongata_contig64971:2744..29001691679671.1880362-CDS-H-elongata_contig64971:2744..2900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64971 2745..2900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64971.14085.1prot_H-elongata_contig64971.14085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64971 2149..2900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64971.14085.1

>prot_H-elongata_contig64971.14085.1 ID=prot_H-elongata_contig64971.14085.1|Name=mRNA_H-elongata_contig64971.14085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
PERVDIAQCRDLPVTLVFLPAHDIAMFVGEGDVDMGITGLDVVQETCDES
EIDIVMKLEFGTCKLCVQAPVASNIKDVKELAGKRIVTSFPKLCKEFFDK
YDSPDNPT
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mRNA from alignment at H-elongata_contig64971:2149..2901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64971.14085.1 ID=mRNA_H-elongata_contig64971.14085.1|Name=mRNA_H-elongata_contig64971.14085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig64971:2149..2901+ (Himanthalia elongata Himel1 dioecious)
CCCGAGCGCGTGGACATCGCTCAGTGCAGGGACCTCCCGGTGACCCTGGT
GTTTTTGCCGGCCCACGACATTGCTATGTTTGTCGGGGAGGGTGATGTCG
ACATGGGCATCACGGGTCTAGATGTGGTCCAGGAGACCTGCGACGAGAGC
GAGATAGACATCGTGATGGTGAGTGGGTGATGAATGCGACCATTGTTATT
CATACTTGTCGTGGTGCAATCAACGTGCTTTGACTTTCTTAGATTTCCGT
GACCATTCCCCGTCTTTTTTCTTCCACATCCCCCCAATGGTAGCGATACC
TCTAGAGTGGAACACCGATCTTCTATATGGTTCCTTGGTCCCACCGCTTG
TGCCTTGTAGTGTAGTGCTCCCTCTTCCCCGCCCCCCGCCCTACCTAGCG
CAACCCTCGACCTTGCTACCCGCCCCCTCCTCCCGTCCCGACTAAGCCCA
AGCTTCTCTGTTGGTAGCACCACTATCTTCCCACAGCACGTCTGCCCTGT
CTAATGCGGCAGTGATGTCACACGACCCGCCGGGCTCTAACGCGGCTTCT
CCCTCGTCGCATGAAACGGCCACCTCGCATGAAACGGAAAAAAAAGAAAT
TGGAATTCGGTACCTGCAAGCTGTGCGTCCAGGCTCCGGTGGCGAGCAAC
ATCAAAGACGTGAAGGAGCTCGCGGGGAAGCGCATCGTGACGTCGTTCCC
CAAGCTCTGCAAGGAGTTCTTCGACAAATACGACTCTCCGGATAACCCCA
CCA
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Coding sequence (CDS) from alignment at H-elongata_contig64971:2149..2901+

>mRNA_H-elongata_contig64971.14085.1 ID=mRNA_H-elongata_contig64971.14085.1|Name=mRNA_H-elongata_contig64971.14085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig64971:2149..2901+ (Himanthalia elongata Himel1 dioecious)
CCCGAGCGCGTGGACATCGCTCAGTGCAGGGACCTCCCGGTGACCCTGGT
GTTTTTGCCGGCCCACGACATTGCTATGTTTGTCGGGGAGGGTGATGTCG
ACATGGGCATCACGGGTCTAGATGTGGTCCAGGAGACCTGCGACGAGAGC
GAGATAGACATCGTGATGCCCGAGCGCGTGGACATCGCTCAGTGCAGGGA
CCTCCCGGTGACCCTGGTGTTTTTGCCGGCCCACGACATTGCTATGTTTG
TCGGGGAGGGTGATGTCGACATGGGCATCACGGGTCTAGATGTGGTCCAG
GAGACCTGCGACGAGAGCGAGATAGACATCGTGATGAAATTGGAATTCGG
TACCTGCAAGCTGTGCGTCCAGGCTCCGGTGGCGAGCAACATCAAAGACG
TGAAGGAGCTCGCGGGGAAGCGCATCGTGACGTCGTTCCCCAAGCTCTGC
AAGGAGTTCTTCGACAAATACGACTCTCCGGATAACCCCACCAAATTGGA
ATTCGGTACCTGCAAGCTGTGCGTCCAGGCTCCGGTGGCGAGCAACATCA
AAGACGTGAAGGAGCTCGCGGGGAAGCGCATCGTGACGTCGTTCCCCAAG
CTCTGCAAGGAGTTCTTCGACAAATACGACTCTCCGGATAACCCCACC
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