mRNA_H-elongata_contig64409.14030.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64409.14030.1
Unique NamemRNA_H-elongata_contig64409.14030.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.760e-40
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVCN 255
            R  + +KNLEEINVLRITLDTQIEDLEQHFETAH NYLQNTDQRTTDFKYLTSKD+ELSREIE+KIRKIERLQSSLQHWRTKV N
Sbjct:  344 REEIRNKNLEEINVLRITLDTQIEDLEQHFETAHINYLQNTDQRTTDFKYLTSKDQELSREIEVKIRKIERLQSSLQHWRTKVQN 428
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BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.580e-39
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVCNKSEIN 270
            R  + +KNLEEINVLRITLDTQIEDLEQHFETAH NYLQNTDQRTTDFKYLTSKD+ELSREIE+KIRKIERLQSSLQHWRTK+    + N
Sbjct:  340 REEIRNKNLEEINVLRITLDTQIEDLEQHFETAHINYLQNTDQRTTDFKYLTSKDQELSREIEVKIRKIERLQSSLQHWRTKIAQNVKEN 429
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BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.210e-35
Identity = 66/84 (78.57%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC 252
            R  + ++NLE+INVLRITLDTQIE+LEQHFETAH NYLQNTDQRTTDFKYLT+KD+ELSREIE+K+RKIERLQ++L HWRTK+ 
Sbjct:  268 REEIRNRNLEDINVLRITLDTQIEELEQHFETAHINYLQNTDQRTTDFKYLTAKDQELSREIELKVRKIERLQNALAHWRTKIA 351
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A2D4CDE8_PYTIN (NYD-SP28_assoc domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDE8_PYTIN)

HSP 1 Score: 130 bits (327), Expect = 8.010e-35
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC 252
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD+ELSR+IE+KIRKIERLQ+S+ HWRTK+ 
Sbjct:   32 REEIRNKNLEDINVLRITLDSTIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQELSRDIELKIRKIERLQASIAHWRTKIA 115
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A024TIJ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TIJ1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.530e-34
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC 252
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD+ELS+EIEIKIRKIERLQ++L HWRTK+ 
Sbjct:  226 REEIRNKNLEDINVLRITLDSNIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQELSKEIEIKIRKIERLQANLTHWRTKIA 309
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A8K1CL71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL71_PYTOL)

HSP 1 Score: 130 bits (328), Expect = 9.040e-34
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC 252
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD+ELSR+IE+KIRKIERLQ+S+ HWRTK+ 
Sbjct:  236 REEIRNKNLEDINVLRITLDSMIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQELSRDIELKIRKIERLQASIAHWRTKIA 319
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A067C119_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C119_SAPPC)

HSP 1 Score: 130 bits (327), Expect = 1.190e-33
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC-NKSEIN 270
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD+ELS++IEIKIRKIERLQ++L HWRTK+  N  E N
Sbjct:  222 REEIRNKNLEDINVLRITLDSNIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQELSKDIEIKIRKIERLQANLTHWRTKIAQNVRECN 312
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: K3X0D8_GLOUD (NYD-SP28 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0D8_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 1.260e-33
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKV 249
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD++LSR+IE+KIRKIERLQSS+ HWRTK+
Sbjct:  236 REEIRNKNLEDINVLRITLDSNIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQDLSRDIELKIRKIERLQSSIAHWRTKI 318
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A1V9ZVH8_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVH8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.620e-33
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC 252
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD+ELS++IEIKIRKIERLQS+L HWRTK+ 
Sbjct: 1003 REEIRNKNLEDINVLRITLDSNIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQELSKDIEIKIRKIERLQSNLTHWRTKIA 1086
[Close]
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Match: A0A6G0WS68_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WS68_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.730e-33
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKYLTSKDRELSREIEIKIRKIERLQSSLQHWRTKVC 252
            R  + +KNLE+INVLRITLD+ IE+LEQHFETAH NYLQNTDQRT DFKYLT+KD+ELS++IEIKIRKIERLQ++L HWRTK+ 
Sbjct:  226 REEIRNKNLEDINVLRITLDSNIEELEQHFETAHLNYLQNTDQRTQDFKYLTAKDQELSKDIEIKIRKIERLQANLTHWRTKIA 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64409.14030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6H2_9PHAE1.760e-4089.41Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FVY5_ECTSI2.580e-3983.33Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A835ZEY8_9STRA2.210e-3578.57Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A2D4CDE8_PYTIN8.010e-3576.19NYD-SP28_assoc domain-containing protein n=1 Tax=P... [more]
A0A024TIJ1_9STRA6.530e-3477.38Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8K1CL71_PYTOL9.040e-3476.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067C119_SAPPC1.190e-3373.63Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
K3X0D8_GLOUD1.260e-3377.11NYD-SP28 domain-containing protein n=1 Tax=Globisp... [more]
A0A1V9ZVH8_9STRA1.620e-3377.38PPM-type phosphatase domain-containing protein n=1... [more]
A0A6G0WS68_9STRA1.730e-3376.19Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64409contigH-elongata_contig64409:1200..1722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4.6e-34
Seed eggNOG ortholog2880.D7FVY5
Preferred nameCCDC65
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.regulation of cilium movement
EggNOG OGs2CMHW@1,2QQDD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.4344633-CDS-H-elongata_contig64409:1199..13161622931030.4344633-CDS-H-elongata_contig64409:1199..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64409 1200..1316 +
1691679668.9478183-CDS-H-elongata_contig64409:1199..13161691679668.9478183-CDS-H-elongata_contig64409:1199..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64409 1200..1316 +
1622931030.4568858-CDS-H-elongata_contig64409:1566..17221622931030.4568858-CDS-H-elongata_contig64409:1566..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64409 1567..1722 +
1691679668.95896-CDS-H-elongata_contig64409:1566..17221691679668.95896-CDS-H-elongata_contig64409:1566..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64409 1567..1722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64409.14030.1prot_H-elongata_contig64409.14030.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64409 1200..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64409.14030.1

>prot_H-elongata_contig64409.14030.1 ID=prot_H-elongata_contig64409.14030.1|Name=mRNA_H-elongata_contig64409.14030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
RHRLIDKNLEEINVLRITLDTQIEDLEQHFETAHFNYLQNTDQRTTDFKY
LTSKDRELSREIEIKIRKIERLQSSLQHWRTKVCNKSEIN*
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mRNA from alignment at H-elongata_contig64409:1200..1722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64409.14030.1 ID=mRNA_H-elongata_contig64409.14030.1|Name=mRNA_H-elongata_contig64409.14030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=523bp|location=Sequence derived from alignment at H-elongata_contig64409:1200..1722+ (Himanthalia elongata Himel1 dioecious)
CGACACCGGCTTATTGACAAGAACTTGGAGGAAATCAATGTTCTCCGGAT
AACGCTGGACACCCAGATCGAAGACCTTGAGCAGCACTTCGAGACGGCAC
ACTTTAACTACTTGCAGGTTTGAGCAGCTCCAGATACCCACGCAGTAGCT
AGATTATTACCCGGAAAACACATGTGTGTCAGGCTCCTTGATTATTTGCT
TGATGATAGTTTTTGGGCGAAGAAATTGATCCCTGTCATGATATCAATAC
ACTTCGTAGATCTGCAGTCAAGCCCAACTCCACCTATTTTTAGTTTACCC
CTTTTGTTTCTCCGTGTTTCTAGCTGTTACGTAACATAAACTCTCCCGTC
CGCTTATTATTCATAAGAACACCGACCAACGAACAACGGATTTCAAGTAC
CTGACATCGAAGGATCGGGAGCTCAGCCGGGAAATAGAGATAAAGATTCG
CAAGATCGAGCGGCTGCAGAGTAGTCTTCAGCACTGGCGTACAAAGGTTT
GCAATAAAAGCGAAATTAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig64409:1200..1722+

>mRNA_H-elongata_contig64409.14030.1 ID=mRNA_H-elongata_contig64409.14030.1|Name=mRNA_H-elongata_contig64409.14030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig64409:1200..1722+ (Himanthalia elongata Himel1 dioecious)
CGACACCGGCTTATTGACAAGAACTTGGAGGAAATCAATGTTCTCCGGAT
AACGCTGGACACCCAGATCGAAGACCTTGAGCAGCACTTCGAGACGGCAC
ACTTTAACTACTTGCAGCGACACCGGCTTATTGACAAGAACTTGGAGGAA
ATCAATGTTCTCCGGATAACGCTGGACACCCAGATCGAAGACCTTGAGCA
GCACTTCGAGACGGCACACTTTAACTACTTGCAGAACACCGACCAACGAA
CAACGGATTTCAAGTACCTGACATCGAAGGATCGGGAGCTCAGCCGGGAA
ATAGAGATAAAGATTCGCAAGATCGAGCGGCTGCAGAGTAGTCTTCAGCA
CTGGCGTACAAAGGTTTGCAATAAAAGCGAAATTAATTAAAACACCGACC
AACGAACAACGGATTTCAAGTACCTGACATCGAAGGATCGGGAGCTCAGC
CGGGAAATAGAGATAAAGATTCGCAAGATCGAGCGGCTGCAGAGTAGTCT
TCAGCACTGGCGTACAAAGGTTTGCAATAAAAGCGAAATTAATTAA
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