mRNA_H-elongata_contig64217.14009.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A6H5JHB6_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB6_9PHAE) HSP 1 Score: 415 bits (1066), Expect = 8.730e-142 Identity = 210/261 (80.46%), Postives = 231/261 (88.51%), Query Frame = 1
Query: 1 LKARLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
L+ARL ELD LV +P+LYDDS KA KIVKERA+VE KL+ V L+SE++ W+EMYE+A LEEE L+ EC++KVG LRK+AER RA+TLLSL GELS S CYLELQAGAGGTESHDWTSML KMYTRWAETK FTLRPL+SS G+EAGLRSVMV V GESAYGWLR EAGVHRLVRNSPYDP GRRHTSFSQVRV+PE GGE G AA VEIPAKDLKVDTMRAQGAGGQHVN+T+SAVR+THLPTGLVALSQSDRSQHKNR
Sbjct: 117 LEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSEVKSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARADTLLSLGGELSFSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFSQVRVFPEAGGESGDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNR 377
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A3M1KBY3_9PROT (Peptide chain release factor 2 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1KBY3_9PROT) HSP 1 Score: 263 bits (673), Expect = 2.130e-83 Identity = 138/258 (53.49%), Postives = 177/258 (68.60%), Query Frame = 1
Query: 10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
RL+EL+ V NP L++D +A K+++ER +E + + SEL E+ E+A E +EA+IDE +D + L + A E+LLS GE ++ CYLE+ AGAGGTES DW MLL+MY RWAE +GF + S GEEAG++S VLV GE+AYGWL+ EAGVHRLVR SP+D RRHTSF+ V VYP I + +E+ KDLK+DT RA GAGGQHVN TESAVR+THLPTG+V Q++RSQHKNR
Sbjct: 31 RLSELNAEVENPDLWNDPERARKLMRERNRLESAVAACREIESELADTVELIELAEAEGDEAMIDEAMDSLRVLARRAHEKEIESLLS--GEADAADCYLEIHAGAGGTESQDWAEMLLRMYLRWAERRGFKTEVVQVSPGEEAGIKSATVLVKGENAYGWLKTEAGVHRLVRISPFDAGARRHTSFASVSVYPAIEDD----IEIEVEDKDLKIDTYRASGAGGQHVNRTESAVRITHLPTGIVVACQNERSQHKNR 282
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: UPI00187B575F (peptide chain release factor 2 n=2 Tax=Sneathiella TaxID=510690 RepID=UPI00187B575F) HSP 1 Score: 259 bits (661), Expect = 7.780e-82 Identity = 131/258 (50.78%), Postives = 182/258 (70.54%), Query Frame = 1
Query: 10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
RL EL+ LV +P L++++ KA +++ER ++ + R+S +LE E+ E+A +EE+E ++E + + LR E ++ R E++LS GE+ + CYLE+ AGAGGTES DWT +LL+MY RWA+ G + L SAGEEAGL+SV + ++GE+AYGWL+ E+GVHRLVR SP+D RRHTSFS V VYP I + +EI KDL++DT RA GAGGQHVN TESA+R+TH+PT +V Q+DRSQHKN+
Sbjct: 31 RLDELNSLVEDPELWNNATKAQGLMRERTTLDTAINAYKRISQDLEDTVELIELAEMEEDEDTLNEAEEALNDLRVEVDKRRLESMLS--GEVDGNDCYLEIHAGAGGTESQDWTQILLRMYMRWADQHGCKTKVLEESAGEEAGLKSVTIEISGENAYGWLKTESGVHRLVRISPFDSNARRHTSFSSVGVYPVIDDD----IDIEIEEKDLRIDTYRASGAGGQHVNRTESAIRITHIPTNIVVQCQNDRSQHKNK 282
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: UPI00146B70B7 (peptide chain release factor 2 n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI00146B70B7) HSP 1 Score: 255 bits (652), Expect = 1.720e-80 Identity = 128/258 (49.61%), Postives = 182/258 (70.54%), Query Frame = 1
Query: 10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
RL EL+ LV +P L++DS+KA +++ER ++ + R+ +L+ E+ E++ +E++E + E + + L+ E ++ R E++LS GE+ + CYLE+ AGAGGTES DWT +LL+MY RWAE G ++ L SAGEEAGL+SV + ++GE+AYGWL+ E+GVHRLVR SP+D RRHTSFS V V+P I + +EI KDL++DT RA GAGGQHVN TESA+R+TH+PT +V Q+DRSQHKN+
Sbjct: 31 RLEELNSLVEDPDLWNDSSKAQALMRERTNLDTAITAYNRIVQDLDDTVELMELSEMEDDEETLGEAAEALRELQVEVDKRRLESMLS--GEVDGNDCYLEIHAGAGGTESQDWTQILLRMYMRWAEQHGCKVKTLEESAGEEAGLKSVTIEISGENAYGWLKTESGVHRLVRISPFDSNARRHTSFSSVGVFPVIDDD----IDIEIEEKDLRIDTYRASGAGGQHVNRTESAIRITHIPTNVVVQCQNDRSQHKNK 282
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: UPI00146C39DC (peptide chain release factor 2 n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146C39DC) HSP 1 Score: 255 bits (651), Expect = 2.740e-80 Identity = 130/258 (50.39%), Postives = 181/258 (70.16%), Query Frame = 1
Query: 10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
RL EL+ LV +P L+++++KA +++ER +E + R++ +LE E+ E+A +E++E + E + L E ER R E++LS GE+ ++ CY+E+ AGAGGTES DW +LL+MYTRWAE G ++ L S GEEAGL+SV + VNGE+AYGWL+ E+GVHRLVR SP+D RRHTSF+ V V+P I + ++I KDL++DT RA GAGGQHVN TESA+R+TH+PT +V Q+DRSQHKNR
Sbjct: 31 RLDELNSLVEDPDLWNNASKAQALMRERTSLENAINSYKRVAQDLEDTVELIELAEMEDDEDTLQEAEAALKDLHTEVERRRVESMLS--GEVDANDCYVEIHAGAGGTESQDWAQILLRMYTRWAEQHGCKVKILEESPGEEAGLKSVTIEVNGENAYGWLKTESGVHRLVRISPFDSNARRHTSFTSVGVFPVIDDD----IEIDIDEKDLRIDTYRASGAGGQHVNRTESAIRITHIPTNVVVQCQNDRSQHKNR 282
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: D0NMN6_PHYIT (Peptide chain release factor, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NMN6_PHYIT) HSP 1 Score: 254 bits (648), Expect = 9.270e-80 Identity = 128/257 (49.81%), Postives = 183/257 (71.21%), Query Frame = 1
Query: 13 LTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
L EL +P+L+DD++ AA +V+ A +E + V L + +E+Y +A EE+E+++ +CV + +R EA++ R E LLS E + C+LE+QAGAGGT+S DWT+ML +MY RW+E +GF ++ + S G+EAG RSV++ ++G AYGW + EAGVHRLVR SP+D GRRHTSF+QVRVYP + E ++A +E+ KDL++DT R+ G GGQHVNST+SA+R+THL TG+V SQSDRSQH+N+
Sbjct: 34 LAELRQEAADPKLWDDASNAASVVQRLAALESRETRVHELHRQFLDTKELYVLAKEEEDESMLGDCVSAMTVVRAEAQQLRLEFLLSH--ETDAHSCFLEIQAGAGGTDSCDWTAMLARMYARWSEMRGFQVQYVDESVGDEAGFRSVVLKLDGVYAYGWAKNEAGVHRLVRISPFDSAGRRHTSFAQVRVYP-MAAEGRSSAEIEVSTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLRTGIVVQSQSDRSQHRNK 287
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: H3GA21_PHYRM (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA21_PHYRM) HSP 1 Score: 253 bits (646), Expect = 2.880e-79 Identity = 129/257 (50.19%), Postives = 177/257 (68.87%), Query Frame = 1
Query: 13 LTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
LTEL +P L+DD+ AA +V+ A +E + L +E+Y +A E +E +I +CV+ + +R A++ R E LLS + S C+LE+QAGAGGT+S DWT+ML +MY RW E +GF ++ + S G+EAG RSV++ ++G AYGW + EAGVHRLVR SP+D GRRHTSF+QVRVYP + E + +EIP KDL++DT R+ G GGQHVNST+SA+R+THLPTG+V SQSDRSQH+N+
Sbjct: 48 LTELREEAADPNLWDDATTAASVVQRLAALESRETRAHELQRRFLDTKELYVMATEESDEPMIRDCVNAMTAVRTGAQQLRLELLLSHESDARS--CFLEIQAGAGGTDSCDWTAMLARMYARWGEARGFQVQHVDESVGDEAGFRSVVLRLDGAYAYGWAKSEAGVHRLVRISPFDSAGRRHTSFAQVRVYP-MASEGRSKEEIEIPTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNK 301
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A4V3RYB7_9PROT (Peptide chain release factor 2 n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4V3RYB7_9PROT) HSP 1 Score: 252 bits (643), Expect = 4.270e-79 Identity = 131/259 (50.58%), Postives = 180/259 (69.50%), Query Frame = 1
Query: 10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTR-AETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
RL EL+ +P L+DD ++A +++ER +++ + V + SEL E+ E+A +EE+E+L+DE LRK AER R AE LSGE ++ C++E+ GAGGTE+ DW +ML++MY+RWA+ GF + + AGEEAGL+S + V GE+AYGWL+ EAG+HRLVR SP+D +GRRHTSF+ V VYPEI +EI KD++ DT RA GAGGQHVN T+SA+R+TH+PTG+V Q+DRSQHKNR
Sbjct: 31 RLDELNAKAEDPGLWDDPSRAQALMRERNKLDSAMTEVREIESELAENLEVAELAEMEEDESLLDEAE---AALRKLAERARRAELQALLSGEADANDCFVEIHPGAGGTEAQDWAAMLVRMYSRWAQASGFKVEVIEEQAGEEAGLKSATLHVKGENAYGWLKTEAGIHRLVRISPFDSSGRRHTSFASVWVYPEIDEN----IEIEINEKDVRTDTFRASGAGGQHVNKTDSAIRLTHIPTGIVVQCQADRSQHKNR 282
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A2E2QH92_9PROT (Peptide chain release factor 2 n=6 Tax=Sneathiella TaxID=510690 RepID=A0A2E2QH92_9PROT) HSP 1 Score: 251 bits (641), Expect = 8.560e-79 Identity = 132/258 (51.16%), Postives = 176/258 (68.22%), Query Frame = 1
Query: 10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
RL EL+ LV +P L++D+ KA +++ER +E L R+ ELE E+ +A EE+E I E + L + R R E++LS GE+ ++ CY+E+ +GAGGTES DWT MLL+MY RWA+ G ++ L SAGEEAGL+SV + V+GE+AYGWL+ E+GVHRLVR SP+D RRHTSFS V VYP I + +E+ KDL++D RA GAGGQHVN TESAVR+TH+PT +V Q+DRSQHKN+
Sbjct: 31 RLEELNSLVEDPDLWNDATKAQSLMRERTTLENALNGYKRIEQELEDNVELIALAEEEEDEETITEAETGLKTLLADVNRRRLESMLS--GEVDANDCYVEIHSGAGGTESQDWTQMLLRMYMRWADQHGHKVKVLEESAGEEAGLKSVTIEVSGENAYGWLKTESGVHRLVRISPFDSNARRHTSFSSVGVYPVIDDD----IDIEVDDKDLRIDVYRASGAGGQHVNRTESAVRITHIPTNVVVQCQNDRSQHKNK 282
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A662WW55_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW55_9STRA) HSP 1 Score: 254 bits (648), Expect = 1.050e-78 Identity = 129/260 (49.62%), Postives = 177/260 (68.08%), Query Frame = 1
Query: 4 KARLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
K L +L P L+DD+ +AA +V++ A +E + L +E+Y +A E +E L+ +C + +R +A++ R E LLS + S C+LE+QAGAGGT+S DWT+ML +MY RW E +GF ++ SAG+EAG RSV++ ++G AYGW + EAGVHRLVR SP+D GRRHTSF+QVRVYP G+ VE+PAKDL+VDT R+ G GGQHVNST+SA+R+THLP+G+V SQSDRSQH+N+
Sbjct: 106 KEALAKLRVQAAEPNLWDDATRAASVVQQLAALEAREAQARELQRRFLDTKELYALAAEEADEPLLRDCEAAMVQVRVDAQQLRLELLLSHESDARS--CFLEIQAGAGGTDSCDWTAMLARMYARWGEARGFQVQHADESAGDEAGFRSVVLRLDGAFAYGWAKSEAGVHRLVRVSPFDSAGRRHTSFAQVRVYPMASEGGGSRQDVELPAKDLRVDTFRSSGPGGQHVNSTDSAIRITHLPSGIVVQSQSDRSQHRNK 363 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64217.14009.1 >prot_H-elongata_contig64217.14009.1 ID=prot_H-elongata_contig64217.14009.1|Name=mRNA_H-elongata_contig64217.14009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp LKARLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMback to top mRNA from alignment at H-elongata_contig64217:985..3455+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64217.14009.1 ID=mRNA_H-elongata_contig64217.14009.1|Name=mRNA_H-elongata_contig64217.14009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2471bp|location=Sequence derived from alignment at H-elongata_contig64217:985..3455+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64217:985..3455+ >mRNA_H-elongata_contig64217.14009.1 ID=mRNA_H-elongata_contig64217.14009.1|Name=mRNA_H-elongata_contig64217.14009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig64217:985..3455+ (Himanthalia elongata Himel1 dioecious)back to top |