mRNA_H-elongata_contig64170.14004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64170.14004.1
Unique NamemRNA_H-elongata_contig64170.14004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64170.14004.1 vs. uniprot
Match: A0A6H5KT83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT83_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 8.620e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 2 
Query:   77 SINQLNCV---QEKAFKNAPRKLPGVTRAKWEESQMLTEREKQSLQRGWNTTEKRLANNFSKRHEYLVCRVPDETS 295
            S+N L  +   QE+ FK   R    VTRA++   QMLT REK+S++RGW   +++L   F +R  YL  R+ D T+
Sbjct:   94 SLNSLGIIGRPQERQFKRQRRAGSDVTRAEFAMQQMLTSREKRSIERGWRRRDRKLRKAFDQRGAYLGGRIKDLTA 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64170.14004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT83_9PHAE8.620e-540.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64170contigH-elongata_contig64170:1768..2796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size484
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64170.14004.1prot_H-elongata_contig64170.14004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64170 1967..2796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.650839-UTR-H-elongata_contig64170:1767..19661622931027.650839-UTR-H-elongata_contig64170:1767..1966Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64170 1768..1966 -
1691679667.7804985-UTR-H-elongata_contig64170:1767..19661691679667.7804985-UTR-H-elongata_contig64170:1767..1966Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64170 1768..1966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.6691215-CDS-H-elongata_contig64170:1966..21951622931027.6691215-CDS-H-elongata_contig64170:1966..2195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64170 1967..2195 -
1691679667.7990859-CDS-H-elongata_contig64170:1966..21951691679667.7990859-CDS-H-elongata_contig64170:1966..2195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64170 1967..2195 -
1622931027.6873717-CDS-H-elongata_contig64170:2740..27961622931027.6873717-CDS-H-elongata_contig64170:2740..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64170 2741..2796 -
1691679667.8109918-CDS-H-elongata_contig64170:2740..27961691679667.8109918-CDS-H-elongata_contig64170:2740..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64170 2741..2796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64170.14004.1

>prot_H-elongata_contig64170.14004.1 ID=prot_H-elongata_contig64170.14004.1|Name=mRNA_H-elongata_contig64170.14004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MVEAPPVWGPKGQLRQPRRSNIISQQHKSAQLCTREGVQKCPPETPWRHP
CEVGRVSDVDGTREAVPTARLEHDGEKAGKQLLETPRVPCVSRT*
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mRNA from alignment at H-elongata_contig64170:1768..2796-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64170.14004.1 ID=mRNA_H-elongata_contig64170.14004.1|Name=mRNA_H-elongata_contig64170.14004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig64170:1768..2796- (Himanthalia elongata Himel1 dioecious)
ATGGTGGAGGCACCTCCGGTCTGGGGTCCAAAAGGCCAGCTAAGGCAACC
CAGAAGGCGGGTACTTTCGCATTTGGATGCTGGTATTCTCAATTTTGAAT
TTTGCTGTTTTGACGTTCTCAACAAATCACCTGAATCTTGTCAAGTTGCA
GTCAAGACTGTTGAGAGCACATCTGGTGCAGTTTTCCTGTTCGACCTTGC
TCGTCACTACGGTATTGCGAGTGGAAAGATAATGTACCTCCACATCACTG
CTGTTTGTGCGGTCGTTTGCCTGCTTGTCATGCATTTGCGCCATTGATCG
TACTCCTCTTTGTGCTGCTTTTTGCAATGATTCTACTGTTTGTGTACTGC
TGCACGCTTGCCATGGTGCCATGTACTTACACCATGATACTGCTGCTTAT
TACATCGACAGTTCGTGCAGTATCTCTCGTACCTTCAAGGATTTTATACA
TTAGTTCGCACTGCTGTAGAACCCTATTTTTCGTTGCTTCACCACGAAAC
AGAGGTACCAGATACAGATTTCAGTCGCGCATGCATATGTCGCCCACGAG
ACCGACCGGTTTTCCATCGTCCAATTACATATATCATGTGTACGATGGCA
GATCAAACATCATCTCGCAGCAGCATAAATCAGCTCAACTGTGTACAAGA
GAAGGCGTTCAAAAATGCCCCCCGGAAACTCCCTGGCGTCACCCGTGCGA
AGTGGGAAGAGTCTCAGATGTTGACGGAACGAGAGAAGCAGTCCCTACAG
CGCGGTTGGAACACGACGGAGAAAAGGCTGGCAAACAACTTCTCGAAACG
CCACGAGTACCTTGTGTGTCGCGTACCTGACGAAACGAGTCGAGAAGACT
GGACCGTTCATCTCCAAACTGCAAAAGGCACTGCTTTGAAATATCCACGC
GTTGCTGTACGTCGAGGACTTCGGAGACACAGCAGTTGAAGCTCAAGCGA
ACATAATTGGGCGTCAGATATCTGAGGCAAAGAGAAACCGGTTGTGGGTA
CAAGCAACGGCGATACTGATAGTACTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig64170:1768..2796-

>mRNA_H-elongata_contig64170.14004.1 ID=mRNA_H-elongata_contig64170.14004.1|Name=mRNA_H-elongata_contig64170.14004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig64170:1768..2796- (Himanthalia elongata Himel1 dioecious)
ATGGTGGAGGCACCTCCGGTCTGGGGTCCAAAAGGCCAGCTAAGGCAACC
CAGAAGATGGTGGAGGCACCTCCGGTCTGGGGTCCAAAAGGCCAGCTAAG
GCAACCCAGAAGATCAAACATCATCTCGCAGCAGCATAAATCAGCTCAAC
TGTGTACAAGAGAAGGCGTTCAAAAATGCCCCCCGGAAACTCCCTGGCGT
CACCCGTGCGAAGTGGGAAGAGTCTCAGATGTTGACGGAACGAGAGAAGC
AGTCCCTACAGCGCGGTTGGAACACGACGGAGAAAAGGCTGGCAAACAAC
TTCTCGAAACGCCACGAGTACCTTGTGTGTCGCGTACCTGAATCAAACAT
CATCTCGCAGCAGCATAAATCAGCTCAACTGTGTACAAGAGAAGGCGTTC
AAAAATGCCCCCCGGAAACTCCCTGGCGTCACCCGTGCGAAGTGGGAAGA
GTCTCAGATGTTGACGGAACGAGAGAAGCAGTCCCTACAGCGCGGTTGGA
ACACGACGGAGAAAAGGCTGGCAAACAACTTCTCGAAACGCCACGAGTAC
CTTGTGTGTCGCGTACCTGA
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