mRNA_H-elongata_contig64050.13994.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64050.13994.1
Unique NamemRNA_H-elongata_contig64050.13994.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.970e-35
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:   19 NQGAQVKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNPNLLSVRPNGFGGAINAKSDTMTMSYLIAYTRPLGPVLLYGLLFALALPIIEIATGIPRGQMISVVASKMN 360
            N    VK  P CLGYD   F+ATF+AF+E            RNPNLL+VRP GFGGA NAKSDTM MSY+IA TRPLGPVLL+GL F LA+P++E+ TGI R Q++S + S  N
Sbjct:   95 NAVQMVKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAIISGGN 208
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC)

HSP 1 Score: 90.9 bits (224), Expect = 1.920e-20
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   34 VKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNPNLLSVRPNGFGGAINAKSDTMTMSYLIAYTRPLGPVLLYGLLFALALPIIEIATGIP 321
            VK +   L +  + F  + +AFSE FG EE+  MV +NP LL++ P+G GGA +    TM  SYL+ YTRP GP LLYGLLF L  P +E  TGIP
Sbjct:   82 VKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIP 177
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS)

HSP 1 Score: 85.5 bits (210), Expect = 4.690e-18
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:   34 VKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNPNLLSVRPNGFGGAINAKSD--TMTMSYLIAYTRPLG---PVLLYGLLFALALPIIEIATGIPRGQMIS 339
            VK  PG L ++ DNF  + DAF E FG EE   MV RNP LLSV+P      I A +D  TM MSY++ +TRP+G   PVL+ GLL   A+P +E A G+ +G+++S
Sbjct:  120 VKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKP-----VIAASADDLTMQMSYVVDFTRPIGAAGPVLILGLL---AVPALESALGVGKGELLS 218
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.490e-17
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:   34 VKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNPNLLSVRPNGFGGAINAKSDTMTMSYLIAYTRPLGPVLLYGLLFALALPIIEIATGIPRGQMI 336
            VKAVPGCL +DP NF+                                 GGA  AK DT  MSY+IA+TRPLGPVLL GL+ AL++P++E  TGIPR +++
Sbjct:   76 VKAVPGCLAFDPSNFQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: A0A1Z5JHY5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHY5_FISSO)

HSP 1 Score: 77.0 bits (188), Expect = 8.570e-15
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   43 VPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNPNLLSVRPNGFGGAINAKSDTMTMSYLIAYTRPLGPVLLYGLLFALALPIIEIATGI 318
            +P CL ++   FK + +A+SE FG ++ + MV RNP LL+V+P+    A      TMT SYL+AYTRP   V L  L   LA+P++E  TGI
Sbjct:  124 LPVCLSFERTWFKPSLEAYSEIFGKDKAMAMVARNPGLLAVKPSD---AATVTDQTMTFSYLVAYTRPYSKVTLPLLFVLLAIPVVEAITGI 212
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: A0A7S2MUE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUE2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-14
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:   34 VKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNPNLLSVRPNGFGGAINAKSDTMTMSYLIAYTRPLGPVLLYGLLFALALPIIEIATGIP 321
             K +P  L ++   F  +   FSE FG ++   MV RNP LL++ P     A  A   TM  SY++A TRP GPVLL G+L  L +P IE  TGIP
Sbjct:  125 TKNLPAVLAFNKSYFAESLANFSETFGEDDAKAMVQRNPGLLAIPP---ANAAKADGQTMQFSYIVAATRPAGPVLLPGVLTLLCVPAIEAVTGIP 217
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.610e-5
Identity = 24/40 (60.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   19 NQGAQVKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMV 138
            N    VK  P CLGYD   F+ATF+AFSE FG EET G V
Sbjct:   95 NAVQMVKNSPSCLGYDGSVFRATFEAFSEVFGEEETKGCV 134
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BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Match: A0A7S2GAC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAC3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.830e-5
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:   34 VKAVPGCLGYDPDNFKATFDAF--------SENFGSEETIGMVTRNPNLLSVRPNGFGGA 189
            V+A P  LGYD   F  T  AF           +  ++ + M+ RNPNL++VRP+G+GGA
Sbjct:  129 VEAEPKVLGYDSTRFSETKAAFVTAMCEGEEAKYSEDDVVAMIMRNPNLIAVRPSGYGGA 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64050.13994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYY7_ECTSI2.970e-3557.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B7FNV7_PHATC1.920e-2050.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B5YMT8_THAPS4.690e-1847.66Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7R9UE42_9STRA1.490e-1743.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5JHY5_FISSO8.570e-1544.57Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2MUE2_9STRA2.360e-1443.75Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A6H5KAE4_9PHAE6.610e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GAC3_9STRA9.830e-540.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64050contigH-elongata_contig64050:762..1732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog2880.D7FYY7
EggNOG OGs2C1F6@1,2S9PY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002980.1
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.6365044-CDS-H-elongata_contig64050:761..8851622931026.6365044-CDS-H-elongata_contig64050:761..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64050 762..885 -
1691679667.293967-CDS-H-elongata_contig64050:761..8851691679667.293967-CDS-H-elongata_contig64050:761..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64050 762..885 -
1622931026.6604846-CDS-H-elongata_contig64050:1490..17321622931026.6604846-CDS-H-elongata_contig64050:1490..1732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64050 1491..1732 -
1691679667.3054454-CDS-H-elongata_contig64050:1490..17321691679667.3054454-CDS-H-elongata_contig64050:1490..1732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64050 1491..1732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64050.13994.1prot_H-elongata_contig64050.13994.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64050 762..1732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64050.13994.1

>prot_H-elongata_contig64050.13994.1 ID=prot_H-elongata_contig64050.13994.1|Name=mRNA_H-elongata_contig64050.13994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MKFTPPNQGAQVKAVPGCLGYDPDNFKATFDAFSENFGSEETIGMVTRNP
NLLSVRPNGFGGAINAKSDTMTMSYLIAYTRPLGPVLLYGLLFALALPII
EIATGIPRGQMISVVASKMNG*
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mRNA from alignment at H-elongata_contig64050:762..1732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64050.13994.1 ID=mRNA_H-elongata_contig64050.13994.1|Name=mRNA_H-elongata_contig64050.13994.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig64050:762..1732- (Himanthalia elongata Himel1 dioecious)
ATGAAATTCACACCGCCCAACCAAGGAGCGCAGGTGAAGGCAGTGCCCGG
CTGCCTGGGGTACGACCCCGACAACTTCAAGGCGACGTTCGACGCGTTTT
CGGAGAACTTTGGCTCCGAGGAAACGATCGGCATGGTCACCCGTAACCCG
AACCTCCTGTCCGTTCGCCCCAACGGCTTCGGTGGCGCGATCAACGCCAA
GAGCGATACGATGACCATGAGCTACCTGATTGCCTATACGAGGTAACTCT
ACCGCCGCTGCTGGTGGTGCCACTGCATTTTTCTTTTAACCATTTTGGTA
CACCATTTATGTATTCGTATGCATTTTTCTTCCGTCCCCAATCTCAGGAC
AAAAAACATTTTCACGATTATTAAAACCGATCTAATGAACCATACTTTTA
TGATGTTCGGGGAAAGATGCGCAGGGCCCACGAGGTTTGTTATTCCGTGC
TCGTTCTTGTTTTTTTCATATAATGCTCGTTCGTTTTTTGGTGAGTCGTT
TCAATATATTTTTAGTGTGAGTTGGTGTGTGTGTTTATTTTTTATTTTTA
GTGACGTTTGTGTTTTTTGTTCTTGTCGCCCGTGTGATTGGGAGAGAGCG
CAGCATGCAAAACTCTACAGGAGTCGCTGAAAAGCGCGGTTGAAGCGTCA
TATGATACATGCATGCATGTTCGGGAGGAAGGCTACTGTAGAACATAAAT
CAACAAGCCTTGCGGCGCTGCGAGTATCGCGATCGTTCACCAAACACCAT
CTGGTCTTAACGCAAACCATCTCCGTCTCTCACTACCCCCATGGTGAGAT
AATCCAACCGTCAATAGACGCCCCGCCCCCACTCCCCCCCCGCTCAGACC
CTTGGGTCCTGTGCTGCTGTACGGACTGCTTTTCGCTCTCGCCCTTCCGA
TAATCGAGATCGCTACGGGCATCCCGCGCGGTCAAATGATATCGGTGGTC
GCGTCCAAGATGAACGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64050:762..1732-

>mRNA_H-elongata_contig64050.13994.1 ID=mRNA_H-elongata_contig64050.13994.1|Name=mRNA_H-elongata_contig64050.13994.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig64050:762..1732- (Himanthalia elongata Himel1 dioecious)
ATGAAATTCACACCGCCCAACCAAGGAGCGCAGGTGAAGGCAGTGCCCGG
CTGCCTGGGGTACGACCCCGACAACTTCAAGGCGACGTTCGACGCGTTTT
CGGAGAACTTTGGCTCCGAGGAAACGATCGGCATGGTCACCCGTAACCCG
AACCTCCTGTCCGTTCGCCCCAACGGCTTCGGTGGCGCGATCAACGCCAA
GAGCGATACGATGACCATGAGCTACCTGATTGCCTATACGAGATGAAATT
CACACCGCCCAACCAAGGAGCGCAGGTGAAGGCAGTGCCCGGCTGCCTGG
GGTACGACCCCGACAACTTCAAGGCGACGTTCGACGCGTTTTCGGAGAAC
TTTGGCTCCGAGGAAACGATCGGCATGGTCACCCGTAACCCGAACCTCCT
GTCCGTTCGCCCCAACGGCTTCGGTGGCGCGATCAACGCCAAGAGCGATA
CGATGACCATGAGCTACCTGATTGCCTATACGAGACCCTTGGGTCCTGTG
CTGCTGTACGGACTGCTTTTCGCTCTCGCCCTTCCGATAATCGAGATCGC
TACGGGCATCCCGCGCGGTCAAATGATATCGGTGGTCGCGTCCAAGATGA
ACGGTTGAACCCTTGGGTCCTGTGCTGCTGTACGGACTGCTTTTCGCTCT
CGCCCTTCCGATAATCGAGATCGCTACGGGCATCCCGCGCGGTCAAATGA
TATCGGTGGTCGCGTCCAAGATGAACGGTTGA
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