mRNA_H-elongata_contig64018.13989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64018.13989.1
Unique NamemRNA_H-elongata_contig64018.13989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Match: D8LR94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR94_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.670e-54
Identity = 84/113 (74.34%), Postives = 98/113 (86.73%), Query Frame = 1 
Query:    1 LQAGQEHPVAAAMRRLWPIMETVSARHQSSSQVFEKLCRFFKHAMRTCGGHFEPLLKPLIAYLVGTFGVVPHAACLYCGSICVSEFGERGPEYAALLFRMLEDFAGVVFRCLQ 339
            +QAG+EHPV   +R LWP++E VSA+HQSS QVFEKL RFFKHAMRTC  HFEPLL+PLIA+LVGTF VVPH++CLYCGSICV+EFG RGPE+ A+LF+ML DFA  VFRCLQ
Sbjct:  699 MQAGREHPVVMVVRELWPVLEAVSAKHQSSGQVFEKLSRFFKHAMRTCKEHFEPLLRPLIAHLVGTFSVVPHSSCLYCGSICVTEFGRRGPEFTAVLFQMLSDFAQAVFRCLQ 811
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BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Match: A0A7S3NIA9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIA9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.490e-21
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    7 AGQEHPVAAAMRRLWPIMETVSARHQSSSQVFEKLCRFFKHAMRTCGGHFEPLLKPLIAYLVGTFGVVPHAACLYCGSICVSEFGERGPEYAALLFRMLEDFAGVVF 327
            A + HPV + + +LWP+ E V+ R+  S Q+ E+LCR +KHAMR+C   FEP+L+ +I +LV  F   P ++ +Y  SIC++EFG    ++  +LF ML   +  VF
Sbjct:  819 ANRRHPVLSFIEKLWPVFEAVAERYGDSPQLIERLCRCYKHAMRSCRTQFEPMLEQMIDHLVRHFSKTPLSSYVYASSICITEFGRDSNKHG-ILFEMLTKLSATVF 924
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BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Match: F0Y5X0_AURAN (Xpo1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5X0_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 5.430e-19
Identity = 45/115 (39.13%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:    1 LQAGQEHPVAAAMRRLWPIMETVSARHQSSSQVF--EKLCRFFKHAMRTCGGHFEPLLKPLIAYLVGTFGVVPHAACLYCGSICVSEFGERGPEYAALLFRMLEDFAGVVFRCLQ 339
            L   + HPV     +LWP+ E + A+++ S+ V   EKLCR +KHAMR+C   F P+L  + A+LV +F   P ++ +YC SIC++EFG+   +  AL F M    +  VF  L 
Sbjct:  691 LLGSRPHPVLELFDKLWPVFEALGAKYRESTVVVVVEKLCRCYKHAMRSCRKAFAPMLSRMAAHLVQSFASNPISSFIYCSSICITEFGDEAEKRPAL-FDMFASLSSAVFGLLS 804
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BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Match: A0A8J2SEP9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEP9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.650e-17
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 1 
Query:   10 GQEHPVAAAMRRLWPIMETVSARHQSSSQVFEKLCRFFKHAMRTCGGHFEPLLKPLIAYLVGTF--GV-----------------VPHAACLYCGSICVSEFGERGPEYAALLFRMLEDFAGVVFRCLQ 339
            G+ HPV      LWP+ E VS + ++S  V EKLCR +KHAMR+C  HFEP+L  + A+L+ +   GV                  P ++ +YC SIC++EFG+        LF M+   +   F  LQ
Sbjct:  677 GRPHPVLEVFANLWPVFEAVSIKMKTSHLVIEKLCRCYKHAMRSCRKHFEPMLDRMTAHLIKSLQDGVQNAGSPTLQDGSRHSASAPLSSFVYCCSICITEFGDEA-RMIPKLFEMVSSVSQACFALLQ 804
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BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Match: A0A7S3L1F1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1F1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-12
Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   19 HPVAAAMRRLWPIMETVSARHQSSSQVFEKLCRFFKHAMRTCGGH-FEPLLKPLIAYLVGTFGVVPHAACLYCGSICVSEFGERGPEYAALLFRMLEDFAGVVF 327
            HP+ A ++ LW +++  S +  + +QV EK+CR +KH++R+C    + PLL+PL+            +  LY  SIC++E+G R    A  L+ M+ + A   F
Sbjct:   97 HPIVAMLQSLWAVLDQASKKFANDTQVAEKICRLYKHSLRSCSKEAYMPLLQPLVRXXXXXXXXXHQSPYLYAASICLTEYG-RDAAMAQPLYDMVANMAETTF 199
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BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Match: U6KLF1_EIMTE (Uncharacterized protein (Fragment) n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KLF1_EIMTE)

HSP 1 Score: 58.9 bits (141), Expect = 1.150e-7
Identity = 29/98 (29.59%), Postives = 46/98 (46.94%), Query Frame = 1 
Query:   46 LWPIMETVSARHQSSSQVFEKLCRFFKHAMRTCGGHFEPLLKPLIAYLVGTFGVVPHAACLYCGSICVSEFGERGPEYAALLFRMLEDFAGVVFRCLQ 339
            LWP+++ +  + Q ++   E+  R  KHA+RT G  F+PL+ P +  L     V  H   LY        FG  GP+    L  +++  A   F  +Q
Sbjct:  543 LWPLLQQLLLQQQQNAAAVERALRCMKHAVRTAGDAFKPLVLPFLQVLQTNAQVCVHPTYLYATEWMAVCFGFEGPQVQQQLAALIQQLATAGFEAIQ 640
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64018.13989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LR94_ECTSI7.670e-5474.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NIA9_9STRA1.490e-2141.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y5X0_AURAN5.430e-1939.13Xpo1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A8J2SEP9_9STRA1.650e-1736.43Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3L1F1_9STRA1.300e-1232.69Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
U6KLF1_EIMTE1.150e-729.59Uncharacterized protein (Fragment) n=1 Tax=Eimeria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64018contigH-elongata_contig64018:252..1243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.4e-46
Seed eggNOG ortholog2880.D8LR94
KEGG rclassRC00017
KEGG koko:K05288,ko:K15436
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.0734088-CDS-H-elongata_contig64018:251..4401622931026.0734088-CDS-H-elongata_contig64018:251..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64018 252..440 -
1691679667.0301204-CDS-H-elongata_contig64018:251..4401691679667.0301204-CDS-H-elongata_contig64018:251..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64018 252..440 -
1622931026.091914-CDS-H-elongata_contig64018:1072..12431622931026.091914-CDS-H-elongata_contig64018:1072..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64018 1073..1243 -
1691679667.0410335-CDS-H-elongata_contig64018:1072..12431691679667.0410335-CDS-H-elongata_contig64018:1072..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64018 1073..1243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64018.13989.1prot_H-elongata_contig64018.13989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64018 252..1243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64018.13989.1

>prot_H-elongata_contig64018.13989.1 ID=prot_H-elongata_contig64018.13989.1|Name=mRNA_H-elongata_contig64018.13989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
LQAGQEHPVAAAMRRLWPIMETVSARHQSSSQVFEKLCRFFKHAMRTCGG
HFEPLLKPLIAYLVGTFGVVPHAACLYCGSICVSEFGERGPEYAALLFRM
LEDFAGVVFRCLQVCLGLL*
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mRNA from alignment at H-elongata_contig64018:252..1243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64018.13989.1 ID=mRNA_H-elongata_contig64018.13989.1|Name=mRNA_H-elongata_contig64018.13989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=992bp|location=Sequence derived from alignment at H-elongata_contig64018:252..1243- (Himanthalia elongata Himel1 dioecious)
CTCCAGGCTGGTCAGGAACACCCCGTGGCGGCAGCGATGCGACGGTTGTG
GCCGATCATGGAAACGGTGTCCGCACGGCACCAGTCTAGCAGCCAGGTGT
TCGAGAAGCTCTGTCGATTCTTCAAGCACGCTATGCGAACTTGCGGCGGA
CACTTTGAGCCCCTGCTCAAGGTTAGTCGTGTCCGCCGACGGAGAACTTC
GGCCGTGTATCAGGTTTTGTAGGCAAGACGCCAGTAATCAGCTCCAGACA
CACTTTGCAGTTATGCGGCTTGGTATATGGTTGTTCGCTATGCAGTTGAG
TATCCAGTTTTGGGATACATTTTCGATTTCGATGCCGAGCACCCCAACAC
CACATGTTTTGATTGCCAATGAGTAACGCGTACAGTTCAGTCCTCCTTAC
ACATTATAGATATATACAACAGACGGGTGCTATAGAGAGAAGGCAAGGGA
AGAAAAAACAAGGCGGAAGTGTTTCAGAGCCCCCCTGAGTGCGTGTAGGT
AGAGAGGTGGGTTGATGTTTACGGAGCGTTATTGAGCGTCAGAACTTTTT
TTTCTTGCTGTGTGTGGGCACGAGACGTACTGGTGCAGCAGGAGGTGTGC
TTCCGCGGAGCATATCGCTGGTCTCAGTCGAATAACCTTACAACCGCCCT
CTCTGGCGATCACGGCCAAGCCATCTCTCCGTGCTTACCACCCCCCCCAC
CCTCCCTCTTCGTCGCCCTTGCTGTTTTTCGATCGTTCGTTCCCCTCTGT
TTCTTCTCTTGTTTTTGTTTTTGCCCTAACGGCGATGGGTCCTCCCCATC
CAGCCACTCATAGCCTACCTGGTGGGGACCTTCGGTGTGGTGCCGCACGC
CGCGTGCCTTTACTGCGGTTCGATCTGCGTTTCGGAATTCGGCGAAAGAG
GGCCGGAGTACGCCGCGCTGTTGTTCCGGATGCTGGAGGACTTTGCGGGT
GTAGTGTTCCGCTGCCTTCAGGTTTGTCTTGGTCTACTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig64018:252..1243-

>mRNA_H-elongata_contig64018.13989.1 ID=mRNA_H-elongata_contig64018.13989.1|Name=mRNA_H-elongata_contig64018.13989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig64018:252..1243- (Himanthalia elongata Himel1 dioecious)
CTCCAGGCTGGTCAGGAACACCCCGTGGCGGCAGCGATGCGACGGTTGTG
GCCGATCATGGAAACGGTGTCCGCACGGCACCAGTCTAGCAGCCAGGTGT
TCGAGAAGCTCTGTCGATTCTTCAAGCACGCTATGCGAACTTGCGGCGGA
CACTTTGAGCCCCTGCTCAAGCTCCAGGCTGGTCAGGAACACCCCGTGGC
GGCAGCGATGCGACGGTTGTGGCCGATCATGGAAACGGTGTCCGCACGGC
ACCAGTCTAGCAGCCAGGTGTTCGAGAAGCTCTGTCGATTCTTCAAGCAC
GCTATGCGAACTTGCGGCGGACACTTTGAGCCCCTGCTCAAGCCACTCAT
AGCCTACCTGGTGGGGACCTTCGGTGTGGTGCCGCACGCCGCGTGCCTTT
ACTGCGGTTCGATCTGCGTTTCGGAATTCGGCGAAAGAGGGCCGGAGTAC
GCCGCGCTGTTGTTCCGGATGCTGGAGGACTTTGCGGGTGTAGTGTTCCG
CTGCCTTCAGGTTTGTCTTGGTCTACTATAACCACTCATAGCCTACCTGG
TGGGGACCTTCGGTGTGGTGCCGCACGCCGCGTGCCTTTACTGCGGTTCG
ATCTGCGTTTCGGAATTCGGCGAAAGAGGGCCGGAGTACGCCGCGCTGTT
GTTCCGGATGCTGGAGGACTTTGCGGGTGTAGTGTTCCGCTGCCTTCAGG
TTTGTCTTGGTCTACTATAA
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