mRNA_H-elongata_contig6384.13959.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6384.13959.1
Unique NamemRNA_H-elongata_contig6384.13959.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: D8LEI5_ECTSI (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEI5_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 1.180e-104
Identity = 206/334 (61.68%), Postives = 229/334 (68.56%), Query Frame = 1 
Query:    1 IYGQILSYTCGLEQMSQLKCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEGLVSPEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTIVLCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKGLERRGSNMVLRARQNRELSRVFKTPRRHRFRRSIKSGGR---KNVDLSNSDTDGVGLGFDDSDNDPLLGG---------GPGAGKGGYDPLEATRMDGSLSRFLALV 966
            +   +LSY  GLEQMSQLKC+GV I+V GAVW+E+F +    A  G   A                       XXXXXXXX   +G LIL  QC SMAALMVLQKPMLAVYPPATLTAWYYAVGSALT+V+C FFGVRP DFLLTG+WEPWIALVYAVV+GTVYTYNAYSWVLNIVS TTATTYLTLQPVTTVILSV+FLN  +RGH++ GG +IAVGL+VT+YAKGLERRGSN +LRA+QNRELSRVFKTPRRHRFRRS+ +GG                            LLG                G YDP EA R DGSL RFLALV
Sbjct:  124 VLAMLLSYMLGLEQMSQLKCLGVFISVAGAVWVELFASTSDWAVAGSTEAXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXWLGSLILLWQCGSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTLVVCGFFGVRPVDFLLTGQWEPWIALVYAVVVGTVYTYNAYSWVLNIVSTTTATTYLTLQPVTTVILSVVFLNTAVRGHEVCGGIVIAVGLLVTIYAKGLERRGSNNLLRAKQNRELSRVFKTPRRHRFRRSVANGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXLLGSIXXXXXXXXXXXXXGGSYDPREAARPDGSLRRFLALV 453
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A4D9D6F0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F0_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.740e-36
Identity = 86/231 (37.23%), Postives = 136/231 (58.87%), Query Frame = 1 
Query:    1 IYGQILSYTCGLEQMSQLKCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEGLVSPEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTIVLCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKGLERR 693
            ++  +LS    +E+++ LK +G+  AV GAV +E+ ++  +  +EG                   S GGDGS+          + G +I+  QC+SMA+L+V QK  L  Y P  +TAWYY++GS LT+++C    +  + + L+    PW+AL YA ++GT + YNAYSW   +V+P   + Y TLQPV T +LSVLFL+ATI G ++ GG ++ +GLI T++ +  E+R
Sbjct:  181 VFTMLLSVLFRMERLTPLKALGLLAAVAGAVVVEVVHSAGISGQEGGE-----------------SEGGDGSSSRADF-----ISGNVIVLLQCLSMASLLVFQKTALTHYHPTVVTAWYYSIGSVLTLIICVSQSLPSSAYALSTSPTPWLALAYAALLGTAFNYNAYSWAGTVVAPGIISIYSTLQPVGTALLSVLFLHATITGGEMGGGLLVILGLIGTVWGRAREKR 389
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: W7TZA6_9STRA (Nodulin 21-like transporter family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZA6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.810e-30
Identity = 78/208 (37.50%), Postives = 119/208 (57.21%), Query Frame = 1 
Query:    1 IYGQILSYTCGLEQMSQLKCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEGLVSPEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTIVLCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHD 624
            ++  +LS    +E+++ LK +G+  AV GAV +E+ +   +  +EG                   S GGDGS+          + G +I+  QC+SMA+L+V QK  L  Y P  +TAWYY++GS LT+++C    +  + + L+    PW+AL YA ++GT + YNAYSW   +V+P   + Y TLQPV T +LSVLFL+ATI G +
Sbjct:  181 VFTMLLSVLFRMERLTPLKALGLLAAVAGAVVVEVVHPAGISGQEGGE-----------------SEGGDGSSSRADF-----ISGNVIVLLQCLSMASLLVFQKTALTHYHPTVVTAWYYSIGSVLTLIICVSQSLPSSAYALSTSPAPWLALAYAALLGTAFNYNAYSWAGTVVAPGIISIYSTLQPVGTALLSVLFLHATITGGE 366
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A834L830_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834L830_RHOSS)

HSP 1 Score: 85.5 bits (210), Expect = 1.270e-13
Identity = 71/248 (28.63%), Postives = 113/248 (45.56%), Query Frame = 1 
Query:    1 IYGQILSYTCGLEQMS------QLKCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEGLVS----PEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPA-TLTAWYYAVGSALTIVLCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKGLERRGSNMVL 711
            ++  IL+ T G E ++      Q K  G  + V GA+ + +F    L+  +    A +  +S    PE  G  WL +G                +G L L   C+SMAA + +Q P+LA YP + ++TA+ Y  G+ L +V   F      D+ LT       A++YA ++ +   Y   +W   I+ P     Y  LQP  +  LS +FL + I    I+GG+ I  GL +  +A   ER+    V+
Sbjct:  230 VFTFILAVTMGTETVNLLRTEGQAKIGGTLVCVFGAILMVLFRGPALIGYKESDFAADNEISAKGQPEPAG--WLMSG------FMEFGIDQWHLGVLCLIGNCMSMAAYLAIQAPLLARYPASLSVTAYSYFFGAVLMVVTALFMTNESTDWSLTKS--EMFAVLYAGIVASALNYGLLTWSNKILGPALVALYNPLQPAASAFLSTVFLGSPIYLGSILGGSFIIAGLYLVTWASYRERQAIMAVI 467
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A7S2Z197_9CHLO (WAT1-related protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z197_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 5.560e-11
Identity = 59/219 (26.94%), Postives = 104/219 (47.49%), Query Frame = 1 
Query:   34 LEQMSQLKCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEGLVSPEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTIVLC-AFFGVRPA---DFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAK 678
            +E  +     G+AI+V GAV   +  ++P   E  + + E  L S  +     +    +             L+G  IL  Q +++  L ++QK ++  +P  T TAWYY++GS LT+V+C  +F    +   +F         +A +YAVV+GT +TY   +W    +  +  + Y  LQ   T+ILS+  L A     D++   +I  G+ + + +K
Sbjct:  127 VEPANPYMLTGIAISVSGAVVAAMSESHPSNDEGLEGVPEVLLESEAQS----MGITEEDQQSFMQRMAENSLLGHGILLVQTLALGTLYLVQKKIVHDFPSLTSTAWYYSIGSFLTVVMCIGYFQSLDSLLHEFSYLSNTHVLVAFLYAVVVGTAFTYGGSTWANKKLHASIVSLYTVLQSPFTLILSIFTLGAKPEVQDVVCMVLIIFGMTLVVGSK 341
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: G7K3Z3_MEDTR (WAT1-related protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7K3Z3_MEDTR)

HSP 1 Score: 76.3 bits (186), Expect = 5.990e-11
Identity = 62/216 (28.70%), Postives = 97/216 (44.91%), Query Frame = 1 
Query:   55 KCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEG--LVSPEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPP-ATLTAWYYAVGSALTIVLCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKGLERR 693
            K  G  I V GA+++ ++    ++      +  +   +VS +     WL  G               LIG       C  MAA + +Q P+L  YP   ++TA+ +  G  L  ++  F     +D++LT      +A+VYA +I + ++Y   SW   I+ PT    Y+ LQP    ILS +FL + I    IIGG +I  GL    +    ERR
Sbjct:  137 KVGGTLICVSGAIFMVLYRGPSVIGYTEPVIIPQNEIIVSGQPEPSAWLITGLQNLGLDNFELGVVFLIG------NCTCMAAFLAIQAPVLKKYPANLSVTAYSFFFGVVLMAIVSLFMTDLSSDWILTESEI--LAVVYAGIITSAFSYGVISWSNKILGPTLVALYVPLQPAFAAILSQIFLGSPIYLGSIIGGCLIIAGLYTVTWTSYKERR 344
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A5B8MXJ6_9CHLO (WAT1-related protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MXJ6_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 7.920e-10
Identity = 65/234 (27.78%), Postives = 110/234 (47.01%), Query Frame = 1 
Query:   34 LEQMSQLKCVGVAIAVIGAVWLEIFNANPLLAEEG----------DALAE--EGLVSPE--EVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTIVLCAFF-----GVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAK 678
            +E  +     G+AI+V GAV   +  ++P   ++G          DAL E  E LVS +   +  + L+                 L+G  IL  Q +++  L ++QK ++  +P  T TAWYY++GS LT+V C  +     G+   +F         +A +YAVV+GT +TY   +W    +  +  + Y  LQ   T++LS+L L       DI+    I  G+++ + +K
Sbjct:  128 VEPANPYMITGIAISVSGAVVAAMSESHPS-NDQGTGDMPRDVLEDALIESTESLVSSDITVIDEKALAQ----EQSFYEKLAQNSLLGHGILLVQTLALGTLYLVQKQIVHEFPSLTSTAWYYSIGSFLTVVTCIGYFQSLDGILH-EFTYLSNTHVLVAFLYAVVVGTAFTYGGSTWANKKLHASVVSLYTVLQSPFTLMLSILALGTKPEMQDILSMIAIIFGMVLVVVSK 355
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A061SIL8_9CHLO (Protein containing duf6 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SIL8_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 5.890e-8
Identity = 66/242 (27.27%), Postives = 104/242 (42.98%), Query Frame = 1 
Query:   31 GLEQMSQLKCVGVAIAVIGAVWLEIFNAN-------PLLAEEGDALAEEGLVSPEEVGGRWLSAGGDGSAXXXXXXXXGQ--------LIGGLILFCQCVSMAALMVLQKPMLAVYPPATLTAWYYAVGSALTIVL-CAFFGVRPADFL---------LTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKG 681
            G   +  L C+ V   + G  ++    A+        L+     AL  E L    ++G    SAG  G+                   ++G LIL  Q  + AAL + Q+     YPP T+TA YY  G+ LT +L  A  G  P   +           GK   W AL+YAV++ TV+ ++A ++  + VSP T + Y  LQP+ ++ + V   +  I   ++  G +I  GL+      G
Sbjct:  216 GFATLGTLCCLNVCGFLAGLQYVSELQASIMQPFVPVLVMGMCGALGIEQLTERNKIGVLMSSAGAIGATIAACGSGAADPSVDTEKLILGSLILVGQISAYAALTIYQRGFAGRYPPLTMTAAYYTFGALLTALLDMAAQGFDPHHLVENLGVFGYPFDGKL--WGALLYAVIVATVFCFSAMTYASSKVSPNTVSVYNALQPLFSLAIGVAIFHNEINTAEVGSGGLIIAGLLFATTDSG 455
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A2I0W6D0_9ASPA (WAT1-related protein n=4 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W6D0_9ASPA)

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-7
Identity = 65/251 (25.90%), Postives = 118/251 (47.01%), Query Frame = 1 
Query:   13 ILSYTCGLEQMS------QLKCVGVAIAVIGAVWLEIFNANPLLAEEGD-ALAEEGLVSPEEVGGRWLSAGGDGSAXXXXXXXXGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPA-TLTAWYYAVGSALTIV--LCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKGLERRGSNMVLRARQNREL 735
            IL+   G+E+++       +K +G ++ + GA  +  +    L     D A+  E ++  +    + L +                 +G L L   C+SMAA +VLQ P+L  YP   +LTA+ Y  G+ L ++  LC +     AD++LT K E  +A++Y+  + +   Y   +W   ++ P     Y  LQ   +  LS +F+   I   +I GG +I  GL +  +A+  E + +    RA+ +++L
Sbjct:  123 ILASIMGVEKVNFRRKECWIKVIGTSVCISGAAVMLTYRGPALFGNGVDHAMLNEMIMGSQLEHAKQLGSN-----------LLNYQLGTLCLIANCISMAAFLVLQAPVLVQYPATLSLTAYTYLFGTLLIVLTGLCTYRDY--ADWMLT-KSEI-VAIIYSGFLSSAVNYGLITWSNKMIGPALVALYNPLQTFMSAFLSAIFIGNPIFLGNIFGGLLIICGLYLVTWARYTESKDTT---RAKSSQDL 355
[Close]
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Match: A0A7S1LN85_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LN85_ALECA)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-7
Identity = 41/129 (31.78%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:  304 VLQKPMLAVYPPATLTAWYYAVGSALTIVLCAF-FGVRPADFLLTGKWEPWIALVYAVVIGTVYTYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAMIAVGLIVTMYAKGLE 687
            V QK +L  YPP    A  + V + +  + C    G     + L   W+   AL+YA+++ T   Y+  SW     +P+T T+++TLQP+   ILS +FL+  +    I GG  I  GL+  + +K  E
Sbjct:  124 VFQKGILNRYPPIATAAASFGVAACIIFIACLITVGSDGHAWRLGESWKATFALIYAILLVTSLNYSLLSWANKRSTPSTVTSFMTLQPICAAILSCIFLHDVLTWGQIGGGIAIVAGLLAFLLSKPSE 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6384.13959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LEI5_ECTSI1.180e-10461.68EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A4D9D6F0_9STRA4.740e-3637.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TZA6_9STRA1.810e-3037.50Nodulin 21-like transporter family protein n=2 Tax... [more]
A0A834L830_RHOSS1.270e-1328.63Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A7S2Z197_9CHLO5.560e-1126.94WAT1-related protein n=1 Tax=Chloropicon laureae T... [more]
G7K3Z3_MEDTR5.990e-1128.70WAT1-related protein n=1 Tax=Medicago truncatula T... [more]
A0A5B8MXJ6_9CHLO7.920e-1027.78WAT1-related protein n=1 Tax=Chloropicon primus Ta... [more]
A0A061SIL8_9CHLO5.890e-827.27Protein containing duf6 n=2 Tax=Tetraselmis sp. GS... [more]
A0A2I0W6D0_9ASPA1.000e-725.90WAT1-related protein n=4 Tax=Dendrobium catenatum ... [more]
A0A7S1LN85_ALECA1.000e-731.78Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6384contigH-elongata_contig6384:5868..10651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.2
Seed ortholog evalue5.1e-85
Seed eggNOG ortholog2880.D8LEI5
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0022857,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944
EggNOG free text desc.transmembrane transporter activity
EggNOG OGs28N0B@1,2QUHA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-21_004530.1
Exons6
Model size2454
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6384.13959.1prot_H-elongata_contig6384.13959.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6384 7353..10609 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.93064-UTR-H-elongata_contig6384:5867..73521622931021.93064-UTR-H-elongata_contig6384:5867..7352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6384 5868..7352 -
1691679665.7135866-UTR-H-elongata_contig6384:5867..73521691679665.7135866-UTR-H-elongata_contig6384:5867..7352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6384 5868..7352 -
1622931022.0645988-UTR-H-elongata_contig6384:10609..106511622931022.0645988-UTR-H-elongata_contig6384:10609..10651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6384 10610..10651 -
1691679665.7981167-UTR-H-elongata_contig6384:10609..106511691679665.7981167-UTR-H-elongata_contig6384:10609..10651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6384 10610..10651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.9452255-CDS-H-elongata_contig6384:7352..75931622931021.9452255-CDS-H-elongata_contig6384:7352..7593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 7353..7593 -
1691679665.7277694-CDS-H-elongata_contig6384:7352..75931691679665.7277694-CDS-H-elongata_contig6384:7352..7593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 7353..7593 -
1622931021.9641175-CDS-H-elongata_contig6384:7849..79381622931021.9641175-CDS-H-elongata_contig6384:7849..7938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 7850..7938 -
1691679665.740369-CDS-H-elongata_contig6384:7849..79381691679665.740369-CDS-H-elongata_contig6384:7849..7938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 7850..7938 -
1622931021.9764838-CDS-H-elongata_contig6384:8476..85611622931021.9764838-CDS-H-elongata_contig6384:8476..8561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 8477..8561 -
1691679665.756031-CDS-H-elongata_contig6384:8476..85611691679665.756031-CDS-H-elongata_contig6384:8476..8561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 8477..8561 -
1622931021.9976988-CDS-H-elongata_contig6384:8754..88611622931021.9976988-CDS-H-elongata_contig6384:8754..8861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 8755..8861 -
1691679665.7673728-CDS-H-elongata_contig6384:8754..88611691679665.7673728-CDS-H-elongata_contig6384:8754..8861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 8755..8861 -
1622931022.012619-CDS-H-elongata_contig6384:9851..100191622931022.012619-CDS-H-elongata_contig6384:9851..10019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 9852..10019 -
1691679665.778323-CDS-H-elongata_contig6384:9851..100191691679665.778323-CDS-H-elongata_contig6384:9851..10019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 9852..10019 -
1622931022.029283-CDS-H-elongata_contig6384:10372..106091622931022.029283-CDS-H-elongata_contig6384:10372..10609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 10373..10609 -
1691679665.7885568-CDS-H-elongata_contig6384:10372..106091691679665.7885568-CDS-H-elongata_contig6384:10372..10609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6384 10373..10609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6384.13959.1

>prot_H-elongata_contig6384.13959.1 ID=prot_H-elongata_contig6384.13959.1|Name=mRNA_H-elongata_contig6384.13959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
MSQLKCVGVAIAVIGAVWLEIFNANPLLAEEGDALAEEGLVSPEEVGGRW
LSAGGDGSAAGEESSGGGQLIGGLILFCQCVSMAALMVLQKPMLAVYPPA
TLTAWYYAVGSALTIVLCAFFGVRPADFLLTGKWEPWIALVYAVVIGTVY
TYNAYSWVLNIVSPTTATTYLTLQPVTTVILSVLFLNATIRGHDIIGGAM
IAVGLIVTMYAKGLERRGSNMVLRARQNRELSRVFKTPRRHRFRRSIKSG
GRKNVDLSNSDTDGVGLGFDDSDNDPLLGGGPGAGKGGYDPLEATRMDGS
LSRFLALV*
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mRNA from alignment at H-elongata_contig6384:5868..10651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6384.13959.1 ID=mRNA_H-elongata_contig6384.13959.1|Name=mRNA_H-elongata_contig6384.13959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4784bp|location=Sequence derived from alignment at H-elongata_contig6384:5868..10651- (Himanthalia elongata Himel1 dioecious)
ATATACGGCCAGATATTATCCTACACCTGCGGCCTTGAGCAGATGTCCCA
GCTGAAGTGCGTCGGAGTCGCAATCGCGGTGATAGGAGCAGTGTGGTTAG
AAATTTTCAACGCCAATCCTTTGTTAGCGGAGGAGGGCGATGCGTTGGCG
GAAGAGGGTTTGGTGTCTCCGGAAGAGGTAGGGGGAAGGTGGCTCTCGGC
CGGAGGAGATGGAAGCGCGGCGGGCGAAGAGAGCTCGGGTGGGGGTCAAC
TCATCGGAGGCTTGATTTTATTTTGTCAGGTGTGTTGGTGCGTCCGCGTG
TGTGTGAGAGAGTTAGAGACGTGGAGAGGGGGGCTGGAAGCGGTAGGACT
TGTGGGTAGAGTTGGTCTCAAGAGGTCAAAAGCTTCGGGGTCGTGAGCTG
GTGGACGTGCTAGAGTTGGGTCAGCGACTGTCCTACATAGCCGTAGCTTT
CGGAGGGCGGAGAGGAATGATTGCGGGCGACAATGTGGAAATCTCACGCG
TTCCTGTTCACTCGCTGTCGCTCCTTCCTTCTTACAACGCCCCCTCCCCT
CCCCCTTAACCCCTCCCCCCTTCAATCGTGAAACTCCCACCTTGCGTTTC
GACTGCCTCGCGCGGAAACGACCCTTCGAAAGTGTGTTTCCATGGCCGCC
TTGATGGTGCTCCAGAAGCCCATGCTAGCGGTGTACCCGCCAGCGACACT
GACGGCATGGTACTACGCCGTGGGCTCTGCGCTGACGATTGTACTCTGCG
CCTTCTTCGGAGTGCGACCTGCGGATTTTTTGTTGACCGGGAAATGGGAG
GTAAGACCGACCCTGCCCGGCCCGGCTGTCTTTTCGTTTGTAGCGCGCAA
AATTACGTTTTGCGTTTTTTTTCGGTGCGGTTGCTTCGAGGACAAGAAGC
CGTTCACTGCGGCTCAGCGCGATACGGTCCTGATGTGCAGTATTTCAGAT
AAGCAGTATCGGCATATGCTTATATCGTCCCATAGCCATATGAATTCCAT
AGCATTGTACGTGTACTTAGAATAACAAAAATCGTCACTTAACAAAGAAT
ATCATTATTAGAGCCTATTTTCATAGATGCTCGTTCTAGTTTTACACAAA
AGGTTTGCCATGTGTTTTGTTGGGGCTCTTGGTTCGAACACTAAACAGTA
AACAGTTCGGGGCTAAGCACACTCTAGCGCGTGCAGGACGGCGGTCCAAC
CGCGAAAGGTTACCGAGTAACTCTTGATTCCGCCCCGGCGATGCTTTGGT
ACGGTCGATGGATTCTGCGCAGCAGCGAAATATCTCTTCTTCTTTGGCGA
TGCTCTCCTCGTCGAGGCTTTTTAGCACCGTTGCTCCGAACGGCGTCGTA
CAGCAGACACTTGATGTCCCACCGCTGTCTTTCATACATTCTCAACAAGA
GGATGGACAAAGTGCTCGACGATGCGCTCCGCGTTTGTTTTGCAGGCGGG
TTTTTAATTGCTTGAACAAAGTCGGACCACGGCGGCGGGCCTTGACAAAA
ACCTTTGGGCCCCCGAAAGACGGAACCCTAGACGAAGAATCCCTCTCATA
AGAAAGCTCCACCCACAGCGCGCAGATTCATGCCCGCGACACGCGCTCCA
CCGTCGTTACATCCGCCGCCACCTTCACCCGGCCGCGTCTCGCTCCCCTC
CTCCTCAGCTGACTTCACTGCCCCTTGATCGGCCCAGTCATGCTAAGGCC
ACACTCCCACACTGCTGACCTCCATGAAACTCCTTTATGTACACCTCTTA
TCTTGGCGTTGATGGGTTCTGTCCTGCGGTGTGCGAGCAGCCTTGGATAG
CCCTGGTGTACGCGGTGGTGATCGGAACGGTCTACACGTACAACGCGTAC
TCGTGGGTGCTCAACATCGTCTCCCCAACCACGGCGACGACCTACCTGTG
AGTTGGGGGGAGTTATGTGGGACAACCCTCCCTCCCCCCCCCAACTCCTC
CGAGCGTAGCGTACAATGGCAATATATTTTGTCTGTTTCTTGGTAGCACA
GGACAAACATGATGTCCGAGTCGCCGGTATGACGCCTCTCTTCAAATCGT
CACGCGCGCGCGCGTCCGACTTCCCTCCCTCCCACCCCAGGACGTTACAA
CCAGTGACTACGGTGATACTGTCGGTGCTTTTTCTCAATGCCACAATCAG
GGGGCACGACATTATCGGTGGCGCGGTGAGAAGCGGTAGACGAGGAGAGG
CGTACATGACACGGGGGCAGGGGGTCGAGGGAGAGGGGGCAGGAGCGATC
TACGCGGTGCCGAATCCTGTAACTACGTGTGACAGCTGTGCAGCCCTTTT
TCTGGCGTAGCCGTCTGGTGTATCCATGTTATTCCTCTTGCTTTTTGGTC
GACGGGTTTAAAGAGGGGGAAGGGAGTGGGATAGGGCGGGCAGAATGCCT
TCAAGCATGGGCTTGGGGTTTGCGTCCCCGTGAAGTGACACACGCGGGTC
AAGGTAAAGAGAGAGGAGCCAAAACCCCAAGCAAACACGTCGTGCGCTCG
TGGACAAGGAACTTGAGATGTGCACTGGTGTGAAACAAAATAGCCCGGCC
CATCATTCGCTGTGTGGGCGGTGATCGCCTTGGTAGGTTACTGCCAGAGT
TGACACTGTCCTCGAGCGTGTTTATCGCAAAAGACTTGCTGTGCTCCTGT
TGTGGTGCAGCATGATAGTGATGATGTGATGAATTTGCCTGATCCCTGGC
GCTGCTTCGACAGATGATCGCCGTGGGGTTGATTGTCACCATGTATGCCA
AGGGGCTCGAGCGTCGGGGCAGCAACATGGTTCTGAGGGCGAGACAAAAC
AGGTGAGGACGATAGATATACCAACGATTCGTAGAAGCGAACCAATCAGG
GCTGCAACCCTTCCGTCCTCCCTACCACAGAAGCCCTGGAGTCTTCGAGA
GACCAGTAACTGTTGAGCGCGGTGGCCACCACTTGGGAGATCGAGCGCAG
GTCGTCACTTTAATTCTGCCGTCCTTACGATTTACTCTACTTTTCCGTAC
CACACGCGGATGTCACACGTTTCTCTCACAACTGATGTTGTGCTTTTGCG
CATTTTAGGGAGCTATCTCGAGTCTTCAAGACTCCTCGAAGGCACCGATT
CCGTAGATCGATCAAAAGTGGAGGTAGGAAAAATGTCGATTTGTCTAACT
CCGACACGGACGGTGTCGGATTAGGCTTCGATGACAGCGATAACGACCCG
CTCCTAGGAGGTGGACCTGGGGCGGGGAAGGGAGGGTATGATCCCCTGGA
GGCAACGCGAATGGACGGCAGCCTGAGCCGGTTTCTAGCCCTCGTGTAAC
ACAAGGCGGTGGTAGTCGATTATCAAGAACCGCAGAACCCTCGCGCGCGG
CGGTACCCAGCCAGACCTGATTCATAGAGGCGCTGCAGTAGAGAACGTGT
TTCGGGGAAGTTTTATTCATTTACAGGAAATGTTACGGTGGATGTCATAG
TAAAGCGACGCTTGAAAATGCTCCAGGTTCGTTTACTGAACGAACTTTCG
AGCGAACATCGCCGTGACAAAATGCACGTTTTTTGTGACTTATGGGCGTC
CTGTGTTGAGGCGGCGGATGCACATACGGCGCGCGAGAGCTCGCGTTACG
CTTTGCCTCTGGGATTTCCATGATCTATTAAAATTTCGTACTGGTAGCAA
GCAGGAGTTTTAAGACTTGTTCCGTCATCAACATTGCCATTAACACCGAC
ATACTTCAGTCAAGTCACTGTGTGTCAAAATGTATTTGTTTCCCCCGAGG
CGAGACGCCGAAAAGGCGATGCATTCTTACTCGCTGAAATATTTAGACGT
CCTCAGGGAGCTGCTGTAGAGTAGCTTGTCGAAATGTGTACTTGATCCTC
GGTGTTGGATGGGTCAGACATATTTTCCCCTGCTTTTTACTTTCATTGAG
GCACTAAAATGCTGCACCTCGTTGGTCTTGCTAGACTTATTGGATAAGCC
ACTGTTACTGGGCAAGCGAGAATTTGCGACGCTAAGCTTTGTACTCGTAC
CCCGAAGCCCCTCGGTCATACAGGCGCGTATTCCAATTCATATTGCGGCC
TTCTCATCCGCAGACTTTTGCTTTCGCTTGAGTCGGTAAATGTGATATTA
GACATCGTTTGATTCCAGATGGTACGGTAAGACTGCTGTAAGTCTCATAC
TGTTCCACGTCATGCTACGAAAAGGAGACTTTGCTTGCCTGGCCTGACCC
GACCGATGTTATGTTTTTTTGGCGACAATTCGCACGAAGGCTTCTCCGTC
GTGTCCCAGATCCGTGTGTATATATATGTGTATGTGTGCGCGCGATGTGG
GAAGGCAATAAGTAGTAGATGTAGTGTAGTGATTTCGCTGCAAATACAGG
CAACGCACGCGATGCCCGTTCGCGCACAGCGTTGGCGGAGGACGGTAGAG
CTTGTTTGAGGTAGTCTGGAAGGCAAGCGAATATCGATGACGGTTGATTT
AAGTACGTTTTAGCTTATGATGTAGACGTAACGAGGCCAAGGGAGAGATT
GCCTTCGGTATGTTTCCTAGGCCAATAATAATCGAATGGGAACACTTCTG
AAAACAGTACATTACAGGAGCTCGTACATGAGGCGTTGATCTCCTCGATG
TGTGTGGTCGACGGCAAGTGTAAGGAGGATGCTCCTTTCGAGGTTTGTAC
AACGTTCGACTGGCAGCCTAGATTGGTATCCAGCACCACTGGAGATTTCC
ATACGCCGGGATGCTTCATTCGGATCGATTCCGGAGATATAGTTCAGGGC
TGTCCTCGGTAATTCTACAGCTTTAAAATCACGG
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Coding sequence (CDS) from alignment at H-elongata_contig6384:5868..10651-

>mRNA_H-elongata_contig6384.13959.1 ID=mRNA_H-elongata_contig6384.13959.1|Name=mRNA_H-elongata_contig6384.13959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig6384:5868..10651- (Himanthalia elongata Himel1 dioecious)
ATGTCCCAGCTGAAGTGCGTCGGAGTCGCAATCGCGGTGATAGGAGCAGT
GTGGTTAGAAATTTTCAACGCCAATCCTTTGTTAGCGGAGGAGGGCGATG
CGTTGGCGGAAGAGGGTTTGGTGTCTCCGGAAGAGGTAGGGGGAAGGTGG
CTCTCGGCCGGAGGAGATGGAAGCGCGGCGGGCGAAGAGAGCTCGGGTGG
GGGTCAACTCATCGGAGGCTTGATTTTATTTTGTCAGATGTCCCAGCTGA
AGTGCGTCGGAGTCGCAATCGCGGTGATAGGAGCAGTGTGGTTAGAAATT
TTCAACGCCAATCCTTTGTTAGCGGAGGAGGGCGATGCGTTGGCGGAAGA
GGGTTTGGTGTCTCCGGAAGAGGTAGGGGGAAGGTGGCTCTCGGCCGGAG
GAGATGGAAGCGCGGCGGGCGAAGAGAGCTCGGGTGGGGGTCAACTCATC
GGAGGCTTGATTTTATTTTGTCAGTGTGTTTCCATGGCCGCCTTGATGGT
GCTCCAGAAGCCCATGCTAGCGGTGTACCCGCCAGCGACACTGACGGCAT
GGTACTACGCCGTGGGCTCTGCGCTGACGATTGTACTCTGCGCCTTCTTC
GGAGTGCGACCTGCGGATTTTTTGTTGACCGGGAAATGGGAGTGTGTTTC
CATGGCCGCCTTGATGGTGCTCCAGAAGCCCATGCTAGCGGTGTACCCGC
CAGCGACACTGACGGCATGGTACTACGCCGTGGGCTCTGCGCTGACGATT
GTACTCTGCGCCTTCTTCGGAGTGCGACCTGCGGATTTTTTGTTGACCGG
GAAATGGGAGCCTTGGATAGCCCTGGTGTACGCGGTGGTGATCGGAACGG
TCTACACGTACAACGCGTACTCGTGGGTGCTCAACATCGTCTCCCCAACC
ACGGCGACGACCTACCTCCTTGGATAGCCCTGGTGTACGCGGTGGTGATC
GGAACGGTCTACACGTACAACGCGTACTCGTGGGTGCTCAACATCGTCTC
CCCAACCACGGCGACGACCTACCTGACGTTACAACCAGTGACTACGGTGA
TACTGTCGGTGCTTTTTCTCAATGCCACAATCAGGGGGCACGACATTATC
GGTGGCGCGGACGTTACAACCAGTGACTACGGTGATACTGTCGGTGCTTT
TTCTCAATGCCACAATCAGGGGGCACGACATTATCGGTGGCGCGATGATC
GCCGTGGGGTTGATTGTCACCATGTATGCCAAGGGGCTCGAGCGTCGGGG
CAGCAACATGGTTCTGAGGGCGAGACAAAACAGATGATCGCCGTGGGGTT
GATTGTCACCATGTATGCCAAGGGGCTCGAGCGTCGGGGCAGCAACATGG
TTCTGAGGGCGAGACAAAACAGGGAGCTATCTCGAGTCTTCAAGACTCCT
CGAAGGCACCGATTCCGTAGATCGATCAAAAGTGGAGGTAGGAAAAATGT
CGATTTGTCTAACTCCGACACGGACGGTGTCGGATTAGGCTTCGATGACA
GCGATAACGACCCGCTCCTAGGAGGTGGACCTGGGGCGGGGAAGGGAGGG
TATGATCCCCTGGAGGCAACGCGAATGGACGGCAGCCTGAGCCGGTTTCT
AGCCCTCGTGTAAGGAGCTATCTCGAGTCTTCAAGACTCCTCGAAGGCAC
CGATTCCGTAGATCGATCAAAAGTGGAGGTAGGAAAAATGTCGATTTGTC
TAACTCCGACACGGACGGTGTCGGATTAGGCTTCGATGACAGCGATAACG
ACCCGCTCCTAGGAGGTGGACCTGGGGCGGGGAAGGGAGGGTATGATCCC
CTGGAGGCAACGCGAATGGACGGCAGCCTGAGCCGGTTTCTAGCCCTCGT
GTAA
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