mRNA_H-elongata_contig63100.13885.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A6H5KZK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK4_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.760e-43 Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 31 MWQQVAAIAGASGVALGAYGAHGLSNKTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMALLKR 369
M Q+AA+AG+S V LGAYGAHGL+ K+DK ++ W TA YQ+ H+LALATLP +QKT ART AGL FT GITLFSGSIY L EDK+A+++AP GGI +ILGWATMA+LKR
Sbjct: 1 MLHQIAALAGSSAVGLGAYGAHGLAGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLFFTTGITLFSGSIYYACLKEDKKASKVAPAGGICMILGWATMAILKR 113
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A835YJ16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ16_9STRA) HSP 1 Score: 149 bits (375), Expect = 4.910e-41 Identity = 71/114 (62.28%), Postives = 92/114 (80.70%), Query Frame = 1
Query: 28 VMWQQVAAIAGASGVALGAYGAHGLSNKTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMALLKR 369
++W VAA++GASGV LGA GAH L NKT+K ++ WNTA YQL+HSLALA LPA+Q++ ART AG+LFT+GI LFSGSIYTY+LT++ + + AP GG+A I GW ++ALLKR
Sbjct: 1 MVWHVVAALSGASGVGLGAIGAHRLKNKTEKEKNDWNTATRYQLIHSLALAVLPAYQRSNARTAAGVLFTSGIILFSGSIYTYILTDNIKMSGAAPLGGMAFIAGWLSLALLKR 114
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A485KYZ3_9STRA (Aste57867_13786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYZ3_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.170e-23 Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 31 MWQQVAAIAGASGVALGAYGAHGLSN--KTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMAL 360
+W +V A++GA+ V LGA+GAHGL K K W+TAAHY L+HS+AL +P TR G L T GI FSGS+YT VLTE K+ + P GG+A I GW + L
Sbjct: 16 LWWKVGAVSGATAVVLGAFGAHGLQTRVKDPKLLKNWDTAAHYHLMHSIALLVVPF---TRRPNVVGGLLTTGIVFFSGSLYTLVLTEQKKLGMITPLGGLAFIAGWLALLL 124
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A1V9ZTF8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTF8_9STRA) HSP 1 Score: 101 bits (252), Expect = 7.770e-23 Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 31 MWQQVAAIAGASGVALGAYGAHGLSN--KTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMAL 360
+W +V A++GA+ V LGA+GAHGL K K W TAAHYQL+HS+AL +P ++ AG L +GI LFSGS+YT VLTE KR + P GG+ + GW ++ L
Sbjct: 14 IWWKVGAVSGATAVLLGAFGAHGLQTRVKDPKLLKTWETAAHYQLIHSVALLAVPFARRPNL---AGGLIASGIVLFSGSLYTIVLTEHKRLGMITPMGGLMFVAGWLSLLL 122
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A225W8S8_9STRA (Membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8S8_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.780e-22 Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 31 MWQQVAAIAGASGVALGAYGAHGLSN--KTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMAL 360
MW +V A++GAS V LGA+GAHGL N K + W TAAHYQL+HS+ L P ++ AG L T G LFSGS+Y LT++K+ + P GG+A++ GW + L
Sbjct: 12 MWWKVGAVSGASAVLLGAFGAHGLKNHVKDPQLLKNWETAAHYQLIHSVVLLVTPLCKRPGL---AGTLITTGTLLFSGSLYAMTLTQEKKLGIVTPIGGVAIVAGWLALIL 120
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: D8LH09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH09_ECTSI) HSP 1 Score: 100 bits (248), Expect = 3.480e-22 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 76 LGAYGAHGLSNKTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIY 270
LGAYGAHGLS K+DK ++ W TA YQ+ H+LALATLP +QKT ART AGLLFT GITLFSGSIY
Sbjct: 17 LGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIY 81
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A7S4HJI3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HJI3_9EUKA) HSP 1 Score: 98.2 bits (243), Expect = 1.380e-21 Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 34 WQQVAAIAGASGVALGAYGAHGL----SNKTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMAL 360
W ++ AI+GA VA+GA+GAHGL SN K S WNTAAHYQL+HS+ L L +T TG L + GITLFSGSIY VLTE K + P GG+ LI W ++A+
Sbjct: 6 WLRLGAISGAISVAMGAFGAHGLKKRYSNNPQKVAS-WNTAAHYQLIHSVVLCLLSFTPRTSPLTG--YLLSTGITLFSGSIYLLVLTEWKLLGPVTPIGGLCLIASWISLAI 115
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A7S4IW56_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IW56_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.920e-21 Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 28 VMWQQ-VAAIAGASGVALGAYGAHGLSNKTDKARSQWNTAAHYQLLHSLALATLPAF---QKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMALLKR 369
+ WQ+ V ++GA+ V GAYGAHGL K + T A Y L+HS L P+ +TRA T AG T GI LF GS Y +TED+ + AP GG++LILGW ++ALL++
Sbjct: 1 MQWQRLVGGLSGAASVGAGAYGAHGLRGKDQSYVRSYETGARYHLVHSALLVATPSICGGGRTRAATAAGAFLTTGIGLFCGSCYAVGVTEDRAYGKAAPAGGVSLILGWVSLALLRK 118
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: G5A7C2_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A7C2_PHYSP) HSP 1 Score: 97.1 bits (240), Expect = 3.950e-21 Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 31 MWQQVAAIAGASGVALGAYGAHGLSNKTDKAR--SQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMAL 360
+W +V A++GAS V LGA+GAHGL N+ W TAAHYQL+HS+ L P ++ AG L T G LFSGS+Y LT +K+ L P GGIA++ GW + L
Sbjct: 12 VWWKVGALSGASAVLLGAFGAHGLKNRITDPHLLKNWETAAHYQLIHSVVLLATPMCRRPGL---AGGLITTGTMLFSGSLYVMTLTGEKKLGMLTPVGGIAIVAGWLALIL 120
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Match: A0A6G0XE60_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE60_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.180e-21 Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 31 MWQQVAAIAGASGVALGAYGAHGLSN--KTDKARSQWNTAAHYQLLHSLALATLPAFQKTRARTGAGLLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGIALILGWATMAL 360
+W +V A++GA+ +A GA+GAH L N K +K W T AHY LLHS+AL +P ++ G L T G+ LFSGS+Y+ VLT+ K + P GG+A+I GW + L
Sbjct: 14 IWWKVGAVSGATAIAFGAFGAHALKNYVKDEKLLKTWETGAHYHLLHSVALLAVPFSRRPNL---VGGLLTTGVLLFSGSLYSIVLTQKKNLGIITPIGGVAMIAGWLALLL 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63100.13885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63100.13885.1 >prot_H-elongata_contig63100.13885.1 ID=prot_H-elongata_contig63100.13885.1|Name=mRNA_H-elongata_contig63100.13885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp MWQQVAAIAGASGVALGAYGAHGLSNKTDKARSQWNTAAHYQLLHSLALAback to top mRNA from alignment at H-elongata_contig63100:710..3091- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63100.13885.1 ID=mRNA_H-elongata_contig63100.13885.1|Name=mRNA_H-elongata_contig63100.13885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2382bp|location=Sequence derived from alignment at H-elongata_contig63100:710..3091- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63100:710..3091- >mRNA_H-elongata_contig63100.13885.1 ID=mRNA_H-elongata_contig63100.13885.1|Name=mRNA_H-elongata_contig63100.13885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig63100:710..3091- (Himanthalia elongata Himel1 dioecious)back to top |