mRNA_H-elongata_contig63018.13880.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63018.13880.1
Unique NamemRNA_H-elongata_contig63018.13880.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.470e-25
Identity = 69/119 (57.98%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  949 DGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPENT-QMFSQDFNVYLSPFIAAAEIIRR----------------------------TMWGFLRVENEHLRIY-GDLSSPGS 1215
            DGKS+RLRPRLLYR+K +Y +VAVVNL LRFLWTVTL+PEN   +F  DF +YLSPFIAAAEI+RR                            TMWGF+RVENEHLRIY G  SS GS
Sbjct:  682 DGKSLRLRPRLLYRNKTLYTSVAVVNLLLRFLWTVTLVPENAPNLFPHDFQIYLSPFIAAAEIVRRLPMSNSSAHPSLGHAATYRPLAPLREGRTMWGFIRVENEHLRIYDGGGSSDGS 800
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S3YFX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFX7_HETAK)

HSP 1 Score: 110 bits (276), Expect = 1.830e-23
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  949 DGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPENTQ-MFSQ--DFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYG 1194
            +G S  LR   LY SK  Y+A+A VNL LRFLWT+TL+PE+TQ +F++  D NV+LSPFIAAAEI RR+MWGFLRVENEHL ++G
Sbjct:  208 NGSSFELRKNRLYSSKSFYLAIAAVNLVLRFLWTITLIPESTQHLFTEKFDINVHLSPFIAAAEICRRSMWGFLRVENEHLHVHG 292
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S2WTB0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTB0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.640e-21
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:  928 IVRVSNRDGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPEN-TQMFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYG 1194
            +VR+S R G+ V  R  LLY+SK  Y+ + ++NLGLRF WT+TL+PE   + + ++  V LSP +AAAEI RR MWGFLR+ENEHL++YG
Sbjct:   69 LVRISQRMGR-VNFRDNLLYKSKSFYLCIMLLNLGLRFFWTLTLIPEGGKEAWQKNIQVRLSPVLAAAEICRRCMWGFLRLENEHLQVYG 157
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S2XUU5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.220e-20
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:  946 RDGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPE-NTQMFSQDF--NVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYG 1194
            RDG + +LR +LL+R K  Y AV  +NL LRFLWT+TL+PE +  +F+ +F  N+YLSPFIAAAEI RR+MWGFLRVENEH+++YG
Sbjct:  432 RDG-AFQLRSKLLFRRKSFYYAVTGINLCLRFLWTITLIPETHKDLFTNNFDLNLYLSPFIAAAEICRRSMWGFLRVENEHIQVYG 516
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S2SPW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.630e-19
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:  928 IVRVSNRDGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPEN-TQMFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYG 1194
            +VR+S R G+ V  R  LLY+SK  Y+ + ++NLGLRF WT+TL+PE   + + ++  V LSP +AAAEI RR MWGFLR+ENEHL++YG
Sbjct:  517 LVRISQRMGR-VNFRDNLLYKSKSFYLCIMLLNLGLRFFWTLTLIPEGGKEAWQKNIQVRLSPVLAAAEICRRCMWGFLRLENEHLQVYG 605
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S2C320_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C320_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.570e-15
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:  970 RPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPENTQM-FSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYG 1194
            R  LLY++K  Y+A+ VVNL LRF W++TL+PE  Q+ + +D  V LSP +A  EI RR +WGFLR+ENEHL +YG
Sbjct:  559 RENLLYQNKSFYLAIMVVNLVLRFFWSLTLIPEGGQLAWQRDLQVRLSPILAGGEICRRCVWGFLRLENEHLHVYG 634
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.340e-14
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  946 RDGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPENT-QMFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIY-GDLSSPGS 1215
            RDGKS+ L P L+Y +K +Y  VAV NL   F  TVTL+PE   ++F  +F  Y +PFI A E + +TMWGF+RVENEHLRIY G  +S GS
Sbjct:  777 RDGKSLPLGPPLVYPNKNLYTNVAVGNLLPSFPGTVTLVPEKPPKLFPPEFPNYPNPFIPATENLPKTMWGFIRVENEHLRIYDGGGTSDGS 868
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S3VHH0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VHH0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.630e-10
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:  952 GKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLP--------ENTQMFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYGDLSSPGSDVD 1224
            G +  +R   LY  K VYV + + N  LRF W +T++P        E  Q FS DF+ +++P +A AEIIRR +WG LRVE E +++       G  VD
Sbjct:  424 GGTFHIRQERLYERKSVYVLIFITNTFLRFFWALTIMPSKYLSPSGELLQTFSADFSTFIAPTLACAEIIRRFLWGLLRVELEVIKVSEKEDGAGYQVD 522
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A1Z5K3N0_FISSO (EXS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3N0_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 8.610e-10
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:  946 RDGKSVRLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPEN----TQMFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYGD 1197
            R     RLR   LY S+ +Y ++A +N+ LRF WT+T +P        +  Q   + +SPF A+AEI+RRT+WG+LR E E L++  D
Sbjct:  403 RSSGQWRLRSERLYNSRVLYWSIASINIILRFCWTLTFIPPQYLNPAGILIQQNKLIMSPFFASAEIVRRTLWGWLRFEYEALKVQKD 490
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BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Match: A0A7S4N8J7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8J7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-9
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  964 RLRPRLLYRSKFVYVAVAVVNLGLRFLWTVTLLPEN--------TQMFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYG 1194
            RLR   LY S++ Y  + V+N  LRF WT++ +P N           F  DF  ++ P +A+AEIIRRT+WG +R+E E ++  G
Sbjct:  492 RLRSTRLYSSRWTYYCIFVINFLLRFCWTLSFIPRNYLSRTGSLVDAFGADFQTFVGPALASAEIIRRTLWGLIRLELETIKTSG 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63018.13880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJQ4_9PHAE1.470e-2557.98EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3YFX7_HETAK1.830e-2364.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WTB0_9STRA4.640e-2154.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XUU5_9STRA1.220e-2061.63Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2SPW5_9STRA2.630e-1954.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C320_9STRA1.570e-1555.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LHJ2_ECTSI3.340e-1454.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3VHH0_9STRA1.630e-1039.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K3N0_FISSO8.610e-1040.91EXS domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S4N8J7_9STRA1.300e-940.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63018contigH-elongata_contig63018:497..3396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1361
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63018.13880.1prot_H-elongata_contig63018.13880.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63018 497..2319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.9403229-CDS-H-elongata_contig63018:496..7131622931013.9403229-CDS-H-elongata_contig63018:496..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63018 497..713 -
1691679662.4626222-CDS-H-elongata_contig63018:496..7131691679662.4626222-CDS-H-elongata_contig63018:496..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63018 497..713 -
1622931013.9549377-CDS-H-elongata_contig63018:2254..23191622931013.9549377-CDS-H-elongata_contig63018:2254..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63018 2255..2319 -
1691679662.4777365-CDS-H-elongata_contig63018:2254..23191691679662.4777365-CDS-H-elongata_contig63018:2254..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63018 2255..2319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.9699917-UTR-H-elongata_contig63018:2319..33961622931013.9699917-UTR-H-elongata_contig63018:2319..3396Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63018 2320..3396 -
1691679662.487733-UTR-H-elongata_contig63018:2319..33961691679662.487733-UTR-H-elongata_contig63018:2319..3396Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63018 2320..3396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63018.13880.1

>prot_H-elongata_contig63018.13880.1 ID=prot_H-elongata_contig63018.13880.1|Name=mRNA_H-elongata_contig63018.13880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MFSQDFNVYLSPFIAAAEIIRRTMWGFLRVENEHLRIYGDLSSPGSDVDD
RSDEGHSRSASTTACSNNAPVAGTGSAAVVGVPASGGVGAGGIG
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mRNA from alignment at H-elongata_contig63018:497..3396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63018.13880.1 ID=mRNA_H-elongata_contig63018.13880.1|Name=mRNA_H-elongata_contig63018.13880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2900bp|location=Sequence derived from alignment at H-elongata_contig63018:497..3396- (Himanthalia elongata Himel1 dioecious)
CCCGTAAATAACATGAGGTATGTTAAACATATAGAGATAGGGAAATATCG
TGAAAAATGCAATTGTACCAAGACATGAAGGGGCGGCGGGATGGAGGGGG
GAGTCTGTAGGCAATGGAAGGAACAAAGACAGGTTGGCACTTTACGGATT
CCACGTCAACACTAATATCTAATATATATATCGAGGTATGCTGCGGGGTA
GGTGTTGTTATCGCATGTCGTATCCTAACGGGCATGAAAGATAGGCATCC
TCAACGATGATCAAGCCGAGGCGGAGAAAAGTATTCTCTGTTTTCGTCGG
CCAGGCTGTGCTTAACGACGATGATTAAACCATCCTTGACCTTGCTACGC
GAAACCGGACGTGGACAGATATACAGGCATACCAATTAAAAGTGCTGTGA
CCAAATATTGGCCAATCAGCGGGCGCTACTGCACTCCAACGTGTACCGCC
AAGGAGCTTCGCTCTCGGCACGAAAGGCATCATAATAAGAGGAGCGCTGC
ATGCTGCAACAGTACCAATCACTAGACTACAATCCGCTCATAGGAAGACT
TATCCTGGCGGCGGAGTATACTATGTGATGACGTGAGAGTTGAAGCCGTT
GTTCAGCAGGCATCCTACAGGCTATATGGCGTACTACACCATCCTTGCCC
TTTGGAGGGGAAGACAAGACTCTTCGACCGGCTAGGTCTCAGAGCTAGCT
CACAGAACACACCCTGCACGAACTAGTAACTCCTCCATGTCCTATAAATA
GCGGTTGTAAAACTCTTTGCCTCAAGAGCGAGAACCCGATCGGGGGATGG
TGGTCGAGGGAGGGGGATTGCTCTGGGAAAATGATTGAAGGAAAATTGAC
GTTTTAAAAATAAATAAATAGATAATAATACAAATCTCGTTCACTTCCCC
CAAATTAACGCATCCAAATTAAATAAAATCGTCCGCGTCTCCAACAGGGA
CGGAAAGTCTGTCCGTCTCCGACCGCGGCTGCTATACCGCAGCAAGTTTG
TTTATGTGGCCGTTGCCGTGGTCAACCTGGGCCTGAGGTTCCTGTGGACC
GTGACGCTGCTTCCGGAGAACACCCAGATGTTCAGCCAGGACTTTAACGT
GTACCTGAGCCCGTTCATCGCTGCGGCGGAGATCATCAGGAGGTACGGTA
TAGGGAGAGGAATTAGTCTCCCCTCCTTCGCCCTCGCCCCTGAATGATTG
GTTGATTGATCGAATGGGTGAATGAATGAATGAATGATTGACTGATCGAT
CGAATGGGTGAATGGATGAATTGTAGGATGGATATCCTTCTTATTCTTTC
GTCGAAGACCCTCCTCTCTCCCCTCTCCCCTCTCCCCTCTGGTATAGTTC
CATGTTTTGGTTATGTAAAGTGTGTAAACATGTCCATCGACACTGGTATA
CACTACTGGACGAGTATTGATGCACAGGAGGGCTAGACGGTAGTTTTTAG
CGCTGTCCTAGCGTAATTTGTTACGATGTTACGACGGGGAGAGTGATGAG
GAAGGCGTTCTTGGAATACTAATAATAGTAATATATAAACAGCACCTCCC
TGCCAACAAACCATTCATCATGCTGGCATGACATAAAACTGTAAAAATAA
ATAAATGACGCGCTGACAGTTGTTAGATGCGTTGTTGTTTTGAATCTCAC
GGGAAAAGACCAAACCCCCCCCCCCATCATCATGCCACCTCGGTTATCGG
TGGGTGGAATCCAATATAATGACTAATGACTACTAAGCATTGAGAAGGTA
GGAGGACGATATTGCAGGGAGATCAATGTCTCGTAATTCTTCACTATTGA
CTGTTGTCATAGTCTCGTAGTTCGACTGCTGCAGTGCCGGTGAAATTATG
TTCTGGCTCCTTTTTATTCGTATACGATATGCCATTTTCCTTTTACATGT
TCCTTTTACATGCTGTATTTATATACTATCATTCCAGTTGGAATATCTGA
CCTGTCATATCCGGCAGCTTGTCATTTCGTTCCATCCCATCCCATCTCTT
ATCTCTGGAAGGTATACATATATATGCATGTAATATTTTCCAGCCTGCTC
TCTATACGTTACAGGTATTCTAAATCTACAGGATCATTGCCGCCTTTGGT
GATCTGAAGCGTGTTGAGAGTTTTATATCGTTTCTTCGAGCACAATATGC
CCCCCCCCCCTCCCTCCTCCCTCGTATATTACGGCCTCGAGGCACCTTCT
AGTAGAATCGACTGTGTCGGGATTGACTACCCTCGGCCGATGAAGTGTTT
TGCGTCGGGGTCACGAATATTTAAAGGCGGTGGGGACCCCCGCACGGGTT
GGCAGCATTTCGGTTCCGCGAGAAACAGCTATCCATGGCACTGTACACCA
GTACGTTTAACAATCGATCGATCAAGCAGCGACATATCTCATCGATCAGG
CGTTTCCCCTCAGGGAAAGGTAATTGTACTGTGGCTACTGTCTGCCCCCG
GGTGCATGTGCTCAACAGTACCGGCCTTGGATTGTGCGAGGACATAACAT
ATGCCCACACGCATGCATGAATTCTGTTTCTTTGTCTTCTCTTTCTGCCT
GCATAGAACTATTTCGGTATCGCAATAAAAGTCCCCACAAGATCCCTGGC
ACAGAACCACCCACTTACTGGAGGCGTGTGCCCCCGCCCCTCCATTGTCA
CCGCCTCGCGCCACTATTCAACGGAAACCCCAGAACAATGTGGGGCTTCC
TGCGCGTGGAGAACGAGCATCTGCGCATCTACGGCGACCTGAGCTCTCCA
GGGTCCGACGTCGACGACCGTTCGGACGAAGGTCACTCTCGATCAGCCTC
CACTACGGCTTGCAGTAACAATGCGCCAGTGGCCGGGACCGGCTCTGCGG
CGGTCGTGGGGGTGCCTGCATCCGGCGGTGTCGGAGCAGGCGGGATTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig63018:497..3396-

>mRNA_H-elongata_contig63018.13880.1 ID=mRNA_H-elongata_contig63018.13880.1|Name=mRNA_H-elongata_contig63018.13880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig63018:497..3396- (Himanthalia elongata Himel1 dioecious)
ATGTTCAGCCAGGACTTTAACGTGTACCTGAGCCCGTTCATCGCTGCGGC
GGAGATCATCAGGAGATGTTCAGCCAGGACTTTAACGTGTACCTGAGCCC
GTTCATCGCTGCGGCGGAGATCATCAGGAGAACAATGTGGGGCTTCCTGC
GCGTGGAGAACGAGCATCTGCGCATCTACGGCGACCTGAGCTCTCCAGGG
TCCGACGTCGACGACCGTTCGGACGAAGGTCACTCTCGATCAGCCTCCAC
TACGGCTTGCAGTAACAATGCGCCAGTGGCCGGGACCGGCTCTGCGGCGG
TCGTGGGGGTGCCTGCATCCGGCGGTGTCGGAGCAGGCGGGATTGGGAAC
AATGTGGGGCTTCCTGCGCGTGGAGAACGAGCATCTGCGCATCTACGGCG
ACCTGAGCTCTCCAGGGTCCGACGTCGACGACCGTTCGGACGAAGGTCAC
TCTCGATCAGCCTCCACTACGGCTTGCAGTAACAATGCGCCAGTGGCCGG
GACCGGCTCTGCGGCGGTCGTGGGGGTGCCTGCATCCGGCGGTGTCGGAG
CAGGCGGGATTGGG
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