mRNA_H-elongata_contig6299.13876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6299.13876.1
Unique NamemRNA_H-elongata_contig6299.13876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: D7G467_ECTSI (Mitochondrial helicase twinkle n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G467_ECTSI)

HSP 1 Score: 489 bits (1258), Expect = 5.790e-168
Identity = 241/289 (83.39%), Postives = 263/289 (91.00%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPLDDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GE+DAMAVYQATG PAVSLPNGASSLPLEVLPLLERF+K+YLWMDHDG GQA VDKFV KLG RRCLVVRP  DDPNPPKDANEALL GR++Q+++DG ASS +HDDIQTFQDLRQ VIHELQ+P EYSGT LQSFPRF +IIKGLRRGELTV TGPTGSGKTTILSQLSLDLAAGGL+TLWGSFEIKNTRL+ KML QFA RP+ DLA SP+SL AVADRFQALPLSF+RFHGGT+VD V+DAMDYAVYANDVQHIILDNLQFMLTR++ EG G KR GP+DKFDAQ
Sbjct:  251 EGEYDAMAVYQATGKPAVSLPNGASSLPLEVLPLLERFNKIYLWMDHDGAGQAGVDKFVLKLGTRRCLVVRPLEDDPNPPKDANEALLAGRNLQDFLDG-ASSTKHDDIQTFQDLRQKVIHELQNPLEYSGTGLQSFPRFTRIIKGLRRGELTVLTGPTGSGKTTILSQLSLDLAAGGLSTLWGSFEIKNTRLMQKMLHQFAGRPVADLAGSPDSLRAVADRFQALPLSFLRFHGGTNVDEVIDAMDYAVYANDVQHIILDNLQFMLTRNSREGHGGKRPGPFDKFDAQ 538          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A835ZLV9_9STRA (Mitochondrial helicase twinkle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLV9_9STRA)

HSP 1 Score: 365 bits (936), Expect = 5.610e-119
Identity = 183/291 (62.89%), Postives = 222/291 (76.29%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPLDDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAG--PWDKFDAQ 867
            +GEFDA+AVYQATGVPAVSLPNG  SLP++VLP+LERF  +YLWMD+D PGQ    KF +KLG RR  +VRP  DD  P KDANEALL G+ +   +   A   + D+I  F DLR+SV+HE+ +P E+ GT L+SFPR  +I+KG R+GEL+VFTG TG+GKTT+LSQ+SLDLA  G++TLWGSFE++NTRL+ KMLQQF  RP + LA    +LSA+ DRF+ALPL FM FHGGTDVD VL+AM+YAVY NDV HIILDNLQFML+R A      KR G   WDKFDAQ
Sbjct:  281 EGEFDALAVYQATGVPAVSLPNGCRSLPVDVLPMLERFTTIYLWMDNDAPGQEGAAKFARKLGERRVRIVRPPADDAAPAKDANEALLAGKDLAALL-AAARPLQRDEILHFSDLRESVLHEIMNPMEFVGTPLESFPRLTEIVKGFRQGELSVFTGGTGAGKTTVLSQISLDLARRGVSTLWGSFEVRNTRLVKKMLQQFGGRPPEALAGDAPALSALMDRFEALPLCFMGFHGGTDVDEVLEAMEYAVYVNDVSHIILDNLQFMLSRSA---TSAKRGGMAQWDKFDAQ 567          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: B8LE42_THAPS (Predicted protein n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LE42_THAPS)

HSP 1 Score: 336 bits (862), Expect = 3.240e-107
Identity = 172/303 (56.77%), Postives = 217/303 (71.62%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVD---DPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPL-----------DDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GEFDAMAVYQATG PAVSLPNG  SLP+EVL LLE FD +YLWMD+DGPG+   + F +KLG  RCL+V+P       P PPKDANEALLTG  I E ++  AS   H+ I  F DLR  VIHE+ +P +Y GT + S P F  +IKG RRGELTV TGPTGSGKTT L Q SLDL   G+N LWGSFEIKNTRL+ K+LQQ+ +  L           ++   +  +L+++AD+F++LP+ FM+FHGG+DVD VLDAM+YA Y +DV+HIILDN+QFM++R + EG+G+     +DKFD Q
Sbjct:  301 EGEFDAMAVYQATGRPAVSLPNGCRSLPMEVLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEALLTGWDINELLEE-ASELPHERILKFSDLRDQVIHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQGINVLWGSFEIKNTRLMHKLLQQYMKDVLPVGLAEKDLSVEERQNAMTALTSLADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISRQSVEGKGSS----FDKFDMQ 598          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A1Z5K003_FISSO (SF4 helicase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K003_FISSO)

HSP 1 Score: 325 bits (833), Expect = 2.680e-103
Identity = 162/296 (54.73%), Postives = 213/296 (71.96%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDP------NPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPLD-DLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GE+DAMAV+QATG+PA+SLPNG  SLP+EVLPLLE ++K+YLWMD+DGPGQ     F QK+G  RC +V+P ++        + PKDAN+ALL G  ++  I   A    H+ + +F DL+ SV+HE+ HP +Y GT L S P+F  ++KGLRRGELTV TGPTGSGKTT L Q+SLDLA  G+N LWGSFE++NTRL+ K+LQQFAR+PL      S + L  +A RF  LPL F++FHG ++++ VLDAM+YAVY +D +HI+LDNLQFM++R     R       +DKFDAQ
Sbjct:  273 EGEYDAMAVWQATGIPAISLPNGCRSLPVEVLPLLEDYEKIYLWMDNDGPGQEGARVFSQKIGLGRCFMVQPTLESTGCLEFADLPKDANDALLQGHDLKRII-MEAKPVPHEQVLSFSDLQDSVLHEILHPEKYEGTKLPSLPKFSAVVKGLRRGELTVVTGPTGSGKTTFLGQMSLDLAEQGVNVLWGSFEVRNTRLIHKLLQQFARQPLPRGDPSSADKLKDIAKRFGELPLHFLKFHGASELEEVLDAMEYAVYVHDCEHIVLDNLQFMISRQNLASRSGN--SNFDKFDAQ 565          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A8K1FKX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKX8_PYTOL)

HSP 1 Score: 319 bits (818), Expect = 5.020e-100
Identity = 167/289 (57.79%), Postives = 206/289 (71.28%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPLDDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GEFDAMAVYQATG+PAVSLPNG  SLP  VLPLLERF K+YLWMD+D PGQA+V+KF  KLG  RC +VRP  D   P KDAN+ALL G  +++ I   A    HD I TF+ LR+ V  E+ +P    G   ++ P   +++KG R GE+T+ TGPTG GKTT+LSQLSLDL   G+NTLWGSFEIKNTRL+ KML Q A +   +L     +  AVAD+F+ALP+ F+RF G TDVD VLDAM+YAVYA DVQHI+LDN+QFM+   A +GRG      +DKF+ Q
Sbjct:  259 EGEFDAMAVYQATGMPAVSLPNGCQSLPPNVLPLLERFKKIYLWMDNDAPGQASVEKFATKLGITRCFIVRPPADSKKPIKDANDALLAGADLKKLIHL-AEIIPHDQIATFEQLRRDVYEEIVNPIRACGVQSRTLPSLNRLLKGHRLGEVTILTGPTGCGKTTLLSQLSLDLCGQGVNTLWGSFEIKNTRLIHKMLTQLAGK---NLRGDVNAFEAVADKFEALPMYFLRFFGSTDVDEVLDAMEYAVYAYDVQHILLDNVQFMM---AGQGRG------YDKFERQ 534          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A1E7FNP2_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNP2_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.010e-99
Identity = 163/291 (56.01%), Postives = 204/291 (70.10%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARR--PLDDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GE+DAMAV QATG  AVSLPNG  SLP++ LPLLERFDK+YLWMD+D PG+   +KF +KLG  R  +V+         KDAN+ALL        +   A+   HD I TF+DLR  V+ EL  P +YSGT + S PRF +IIKG RRGE+TV TGPTG+GKTT L Q+SLDLA  G N LWGSFEIKNTRLL K+++QF+R   P+     + E   A+ADRF+ LPL FM+FHGG+D+D VLDAM+YAVY NDV+HIILDN+QFM+TR+        +   +DKF+ Q
Sbjct:  256 EGEYDAMAVSQATGRHAVSLPNGCRSLPVQTLPLLERFDKIYLWMDNDEPGREGAEKFAKKLGVNRTYIVQCL-----EAKDANDALLNKDIDLNQVIENATLTPHDRIVTFKDLRNDVLQELLEPDQYSGTPVPSLPRFTQIIKGFRRGEMTVLTGPTGAGKTTFLGQVSLDLAEQGENVLWGSFEIKNTRLLHKLMKQFSRDSLPVSTEVNAREKFEALADRFETLPLYFMKFHGGSDMDEVLDAMEYAVYVNDVEHIILDNMQFMITRNG-------KKSSFDKFEVQ 534          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A448ZHU2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHU2_9STRA)

HSP 1 Score: 317 bits (812), Expect = 2.050e-98
Identity = 168/292 (57.53%), Postives = 208/292 (71.23%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGR-SIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARR--PLDDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GE+DAMAV+QATG+ AVSLPNG  SLP++VLPLLERFDK+ LWMD D PG+   +KF +KLG  R  +V    D     KDAN+ALL G   ++E I+  A    HD I TF DLR  V+ EL  P  YSGT + S P+F ++IKG RRGE+TV TGPTG GKTT L Q+SLDLA  G N LWGSFEIKNTRLL K+L+QF+R   P++    + E+  A+ADRF+ LPL FM+FHGG+DVD VLDAM+YAVY NDV+HIILDN+QFM+TR + +         WDKF+ Q
Sbjct:  472 EGEYDAMAVHQATGLAAVSLPNGCRSLPVQVLPLLERFDKIVLWMDDDAPGREGAEKFAKKLGIDRTHIVAGRGD----AKDANDALLRGDIDLEERIEQAALVP-HDRIVTFGDLRNDVLKELLEPELYSGTPITSLPKFTQLIKGFRRGEMTVLTGPTGCGKTTFLGQVSLDLAEQGENVLWGSFEIKNTRLLHKLLKQFSRDSLPINTDKNARENFEALADRFETLPLYFMKFHGGSDVDEVLDAMEYAVYVNDVEHIILDNMQFMITRHSQKSS-------WDKFEVQ 751          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A7S2WTT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT8_9STRA)

HSP 1 Score: 310 bits (794), Expect = 2.980e-98
Identity = 160/293 (54.61%), Postives = 203/293 (69.28%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPLDDLARSPES----LSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GEFDAMAVYQATG+PAVSLPNGASSLP++VLPLLE F+K+YLWMD+D  G++  +KF +KLG  RC ++ P    P  PKDANEAL+ G  I   I G A    H  I TF  LR+ V+HE+ HP  Y+GT ++S P F K+IKG R GEL++FTGPTG GKTT+L+Q+SLDLA  G   LWGSFE+ N RL+ K+L Q        +    ++    L+  ADRFQ LP+ FM FHG +D+D VLDAMD+AVY +DVQHII+DNLQFML+R+          G  D+F+ Q
Sbjct:  229 EGEFDAMAVYQATGMPAVSLPNGASSLPVQVLPLLEPFEKIYLWMDNDAAGKSGCEKFARKLGLSRCHIISPS-PGPAVPKDANEALVQGCDIAAII-GDARPPEHSQISTFVHLRERVLHEMMHPELYAGTPVKSLPEFTKVIKGFRPGELSIFTGPTGVGKTTLLAQISLDLAEHGNRMLWGSFEVSNIRLMSKLLTQCGLGAGHQVTPGSKAYQAALNQTADRFQDLPMFFMTFHGSSDLDQVLDAMDFAVYVHDVQHIIIDNLQFMLSRNYR--------GSMDRFEQQ 511          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A3F2RTD2_9STRA (SF4 helicase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTD2_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.310e-96
Identity = 165/292 (56.51%), Postives = 206/292 (70.55%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVD-DPNPPKDANEALLTGRSIQEYIDGGASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPLDDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQAS 873
            +GEFDAMAVYQATG+PAVSLPNG  SLP  VLPLLERF ++YLWMD+D  GQA V+KF  KLG  RC +VR  VD D +  KDAN+AL  G  +   +   A    H  I TF++LR+ V  E+ +P    G   ++FP   +++KG R GE+TV TGPTG GKTT+LSQLSLDL   G++TLWGSFEIKNTRL+ KML Q A+R   +L+   ++  A ADRF+ALP+ F+RF G TDVD VLDAM+YAVYA DVQHI+LDN+QFM+   A +GRG      +DKF+ Q S
Sbjct:  172 EGEFDAMAVYQATGMPAVSLPNGCQSLPPSVLPLLERFKRIYLWMDNDASGQANVEKFASKLGMTRCYIVRTPVDSDASHVKDANDALRAGLDLTAIV-RAAEIIPHSQITTFEELRREVYDEIVNPLRACGVQSRAFPSLNRLMKGHRMGEVTVLTGPTGCGKTTLLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQR---NLSGDVKAFEAAADRFEALPMHFLRFFGSTDVDEVLDAMEYAVYAYDVQHILLDNVQFMM---AGQGRG------YDKFERQDS 450          
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Match: A0A7S4AR51_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AR51_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.650e-96
Identity = 169/304 (55.59%), Postives = 207/304 (68.09%), Query Frame = 1
Query:    1 QGEFDAMAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVDKFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGG-----------ASSNRHDDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFTGPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPL----DDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQHIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQ 867
            +GE+DAMAVYQATG+PAVSLPNG  SLP++VLPLLERF+K+ LWMD D PG+   +KF +KLG +R      F+   +  KDAN+ALL     + Y +             A+   HD I TF DLR  V+ EL  P  YSGT + S P+F  +IKG RRGE+TV TGPTG GKTT L Q+SLDLA  G N LWGSFEIKNTRLL K+L+QF+R  L    D+ AR  E   A+ADRF+ LPL FM+FHGG+DVD VLDAM+YAVY NDV+HIILDN+QFM+TR + +         WDKF+ Q
Sbjct:  462 EGEYDAMAVYQATGLPAVSLPNGCRSLPVQVLPLLERFEKIVLWMDADEPGREGAEKFAKKLGIKRT-----FIAKCDWAKDANDALLLLAGEENYNNNAIDDVIRNCIETAALVPHDRIVTFGDLRDEVLKELLEPELYSGTPIPSLPKFTNLIKGFRRGEMTVLTGPTGCGKTTFLGQISLDLAEQGENVLWGSFEIKNTRLLHKLLKQFSRDSLPISTDENAR--ECFEALADRFENLPLYFMKFHGGSDVDEVLDAMEYAVYVNDVEHIILDNMQFMITRHSQKSS-------WDKFEVQ 751          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6299.13876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G467_ECTSI5.790e-16883.39Mitochondrial helicase twinkle n=2 Tax=Ectocarpus ... [more]
A0A835ZLV9_9STRA5.610e-11962.89Mitochondrial helicase twinkle n=1 Tax=Tribonema m... [more]
B8LE42_THAPS3.240e-10756.77Predicted protein n=2 Tax=Thalassiosira pseudonana... [more]
A0A1Z5K003_FISSO2.680e-10354.73SF4 helicase domain-containing protein n=2 Tax=Fis... [more]
A0A8K1FKX8_PYTOL5.020e-10057.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1E7FNP2_9STRA1.010e-9956.01p-loop containing nucleoside triphosphate hydrolas... [more]
A0A448ZHU2_9STRA2.050e-9857.53Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2WTT8_9STRA2.980e-9854.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3F2RTD2_9STRA1.310e-9656.51SF4 helicase domain-containing protein n=3 Tax=Phy... [more]
A0A7S4AR51_9STRA1.650e-9655.59Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6299contigH-elongata_contig6299:599..2692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score482.3
Seed ortholog evalue1.6e-133
Seed eggNOG ortholog2880.D7G467
Preferred nameC10orf2
KEGG koko:K17680
GOsGO:0000002,GO:0000959,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006268,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019899,GO:0022607,GO:0031974,GO:0032042,GO:0032392,GO:0032508,GO:0032774,GO:0034214,GO:0034641,GO:0034645,GO:0034654,GO:0042645,GO:0043139,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0051259,GO:0051260,GO:0051276,GO:0051536,GO:0051537,GO:0051540,GO:0065003,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0140053,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mitochondrial DNA replication
EggNOG OGsKOG2373@1,KOG2373@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmitochondrial helicase twinkle
Ec32 orthologEc-02_001460.1
Exons5
Model size882
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6299.13876.1prot_H-elongata_contig6299.13876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6299 617..2692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.4241955-UTR-H-elongata_contig6299:598..6161622931013.4241955-UTR-H-elongata_contig6299:598..616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6299 599..616 +
1691679662.2349443-UTR-H-elongata_contig6299:598..6161691679662.2349443-UTR-H-elongata_contig6299:598..616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6299 599..616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.440769-CDS-H-elongata_contig6299:616..7841622931013.440769-CDS-H-elongata_contig6299:616..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 617..784 +
1691679662.2460005-CDS-H-elongata_contig6299:616..7841691679662.2460005-CDS-H-elongata_contig6299:616..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 617..784 +
1622931013.4583814-CDS-H-elongata_contig6299:1208..13221622931013.4583814-CDS-H-elongata_contig6299:1208..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 1209..1322 +
1691679662.2539508-CDS-H-elongata_contig6299:1208..13221691679662.2539508-CDS-H-elongata_contig6299:1208..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 1209..1322 +
1622931013.4702294-CDS-H-elongata_contig6299:1761..18331622931013.4702294-CDS-H-elongata_contig6299:1761..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 1762..1833 +
1691679662.2701304-CDS-H-elongata_contig6299:1761..18331691679662.2701304-CDS-H-elongata_contig6299:1761..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 1762..1833 +
1622931013.4819515-CDS-H-elongata_contig6299:2056..23161622931013.4819515-CDS-H-elongata_contig6299:2056..2316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 2057..2316 +
1691679662.2806773-CDS-H-elongata_contig6299:2056..23161691679662.2806773-CDS-H-elongata_contig6299:2056..2316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 2057..2316 +
1622931013.493727-CDS-H-elongata_contig6299:2442..26921622931013.493727-CDS-H-elongata_contig6299:2442..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 2443..2692 +
1691679662.2892344-CDS-H-elongata_contig6299:2442..26921691679662.2892344-CDS-H-elongata_contig6299:2442..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 2443..2692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6299.13876.1

>prot_H-elongata_contig6299.13876.1 ID=prot_H-elongata_contig6299.13876.1|Name=mRNA_H-elongata_contig6299.13876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MAVYQATGVPAVSLPNGASSLPLEVLPLLERFDKLYLWMDHDGPGQAAVD
KFVQKLGARRCLVVRPFVDDPNPPKDANEALLTGRSIQEYIDGGASSNRH
DDIQTFQDLRQSVIHELQHPREYSGTALQSFPRFMKIIKGLRRGELTVFT
GPTGSGKTTILSQLSLDLAAGGLNTLWGSFEIKNTRLLLKMLQQFARRPL
DDLARSPESLSAVADRFQALPLSFMRFHGGTDVDAVLDAMDYAVYANDVQ
HIILDNLQFMLTRDAHEGRGTKRAGPWDKFDAQASLS*
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mRNA from alignment at H-elongata_contig6299:599..2692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6299.13876.1 ID=mRNA_H-elongata_contig6299.13876.1|Name=mRNA_H-elongata_contig6299.13876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2094bp|location=Sequence derived from alignment at H-elongata_contig6299:599..2692+ (Himanthalia elongata Himel1 dioecious)
CAGGGCGAGTTCGACGCTATGGCTGTATACCAAGCGACAGGCGTTCCTGC CGTGTCTCTACCTAATGGCGCGAGCTCGCTACCACTCGAGGTCCTCCCGC TCTTGGAACGCTTCGATAAGTTGTATCTCTGGATGGACCACGACGGACCA GGCCAAGCAGCAGTCGACAAATTCGTCCAAAAACTGGTAGGTTCGTGAGC TTGAGCAATTTTCAGAGTAACTGTAAGTGTAACTCTTCGCAACCAAATAT CTTTCTCGTCCTCGTCGATCGTGTTTTTGACCCGATGGGAGCATAACTCT ACGACTTGAAATATATAATTAATGTCCCTTAGATTCAATATATTGTCGCG CGGAGGTAGGTTCGTTCACTCGGTGGGAGTTGACGCGTTTCTAGCGTTTC TAGTTTGCCTGAGCCTATAATAGTCGGAAAATATTGCAGTATTTTAGTAT TTGGTCTATTGATAGTATCGAGACAAGACAAGACAAGCGGGGTCTGAGAT CTGAGATCGGTTTTCAAAATAGCGAACTGGTCCATTTCACCAGATGGTAT TTTATGTTACCTTCTGCCGTCTTCTGTTCTGTGTTGCGTCGAACTATCGA ACGCAATCAGGGAGCCCGGCGCTGCTTGGTTGTGCGACCGTTCGTGGACG ATCCTAACCCACCCAAGGACGCCAACGAGGCACTTCTGACAGGGCGATCT ATCCAAGAATATATTGACGGTGGGGTTTCGCTCATGGTGCATGGTGCATG GTCCGGAGAGGGAATTGTCACGCTTTGAAAAACTGGGCAGCAGTGGTTCA TAAACCACTGCTGTTCTTGGTTGATGCTCAACCCCGCTTGGTGGTACGAC CCTACAGTATTAGGGCTATTAAACCTTTCATAGTTTGTCAAAAAGGAGGT TCACCAAGCTCCAGAAGTTTTCATTCGAGTCCTTGAAGTTCAGCGAGCCC GCGAATCCAGTCATTTTGCTTCCCAAATTCCCTGCACATACTTCTCCCAT AGCAAATTATATTTTCTTGTAGCCTCCCGAATATTTTTTCTCATAAGCAA AGAACACACGTCGCATAAAGGTCGCGTTTATCAACCTTGGTATTATTTGC TACTTCTGGACTCGCATGTGTGGTCATGATGTATGTATCACGTATCTATA TGTATTGACAGAGGCGAGCTCAAATCGGCATGATGACATTCAGACGTTTC AGGATCTACGCCAGAGTGTCATCCATGAACTTCAGGTCCGTTTTATTTTT AAGTCGACTTGGCGGTGTCGCACAATGTTTGGCAGTATCGACAGGCACCC AAGCACAAGCACCTTCCATTTTTATGTGTAAAATGAGATCGGGGAGTGGT ACGAGTTCTAATAACGTGCATCTCTCCGGTGGTGCCAAAAACACAAAAAA CAACCACTTTTCTGTGCATTCTGAATCGGTTATTGGCCTCCGCATCCTAC ATCCTTAGCACCCGCGCGAGTATAGTGGAACAGCGCTGCAGTCTTTCCCG CGGTTTATGAAGATCATCAAGGGGCTTAGGCGCGGAGAGCTCACAGTCTT CACTGGGCCCACTGGCTCAGGAAAGACTACGATATTGAGCCAACTGTCGC TTGACCTTGCAGCCGGAGGTCTCAACACGTTGTGGGGCAGCTTCGAGATC AAGAATACACGATTGCTGCTGAAGATGCTCCAGCAGTTTGCACGGAGACC TCTGGACGATCTAGCGAGGTAATGAAAGAATTGCGCGCTCACGGCTCACA TCTCCGAATCTCAAGATACAATTTGGCTCTTTTGAGCTCCCATCCGGACC GGTTTGTACGCAAACATTCGTCTCTCGTTGCTTTTCTCGTGTAGGTCGCC CGAATCGCTGTCGGCCGTGGCAGACCGTTTCCAGGCCCTACCGTTGAGCT TTATGCGGTTTCACGGTGGGACAGACGTGGATGCGGTTCTGGACGCGATG GACTACGCAGTGTACGCGAACGATGTCCAGCACATCATTCTAGATAATCT GCAGTTCATGCTGACCCGGGACGCGCACGAAGGACGAGGAACGAAACGAG CAGGACCATGGGACAAGTTTGACGCCCAGGCGAGTTTGTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6299:599..2692+

>mRNA_H-elongata_contig6299.13876.1 ID=mRNA_H-elongata_contig6299.13876.1|Name=mRNA_H-elongata_contig6299.13876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig6299:599..2692+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTATACCAAGCGACAGGCGTTCCTGCCGTGTCTCTACCTAATGG
CGCGAGCTCGCTACCACTCGAGGTCCTCCCGCTCTTGGAACGCTTCGATA
AGTTGTATCTCTGGATGGACCACGACGGACCAGGCCAAGCAGCAGTCGAC
AAATTCGTCCAAAAACTGATGGCTGTATACCAAGCGACAGGCGTTCCTGC
CGTGTCTCTACCTAATGGCGCGAGCTCGCTACCACTCGAGGTCCTCCCGC
TCTTGGAACGCTTCGATAAGTTGTATCTCTGGATGGACCACGACGGACCA
GGCCAAGCAGCAGTCGACAAATTCGTCCAAAAACTGGGAGCCCGGCGCTG
CTTGGTTGTGCGACCGTTCGTGGACGATCCTAACCCACCCAAGGACGCCA
ACGAGGCACTTCTGACAGGGCGATCTATCCAAGAATATATTGACGGTGGG
GGAGCCCGGCGCTGCTTGGTTGTGCGACCGTTCGTGGACGATCCTAACCC
ACCCAAGGACGCCAACGAGGCACTTCTGACAGGGCGATCTATCCAAGAAT
ATATTGACGGTGGGGCGAGCTCAAATCGGCATGATGACATTCAGACGTTT
CAGGATCTACGCCAGAGTGTCATCCATGAACTTCAGGCGAGCTCAAATCG
GCATGATGACATTCAGACGTTTCAGGATCTACGCCAGAGTGTCATCCATG
AACTTCAGCACCCGCGCGAGTATAGTGGAACAGCGCTGCAGTCTTTCCCG
CGGTTTATGAAGATCATCAAGGGGCTTAGGCGCGGAGAGCTCACAGTCTT
CACTGGGCCCACTGGCTCAGGAAAGACTACGATATTGAGCCAACTGTCGC
TTGACCTTGCAGCCGGAGGTCTCAACACGTTGTGGGGCAGCTTCGAGATC
AAGAATACACGATTGCTGCTGAAGATGCTCCAGCAGTTTGCACGGAGACC
TCTGGACGATCTAGCGAGCACCCGCGCGAGTATAGTGGAACAGCGCTGCA
GTCTTTCCCGCGGTTTATGAAGATCATCAAGGGGCTTAGGCGCGGAGAGC
TCACAGTCTTCACTGGGCCCACTGGCTCAGGAAAGACTACGATATTGAGC
CAACTGTCGCTTGACCTTGCAGCCGGAGGTCTCAACACGTTGTGGGGCAG
CTTCGAGATCAAGAATACACGATTGCTGCTGAAGATGCTCCAGCAGTTTG
CACGGAGACCTCTGGACGATCTAGCGAGGTCGCCCGAATCGCTGTCGGCC
GTGGCAGACCGTTTCCAGGCCCTACCGTTGAGCTTTATGCGGTTTCACGG
TGGGACAGACGTGGATGCGGTTCTGGACGCGATGGACTACGCAGTGTACG
CGAACGATGTCCAGCACATCATTCTAGATAATCTGCAGTTCATGCTGACC
CGGGACGCGCACGAAGGACGAGGAACGAAACGAGCAGGACCATGGGACAA
GTTTGACGCCCAGGCGAGTTTGTCTTGAGTCGCCCGAATCGCTGTCGGCC
GTGGCAGACCGTTTCCAGGCCCTACCGTTGAGCTTTATGCGGTTTCACGG
TGGGACAGACGTGGATGCGGTTCTGGACGCGATGGACTACGCAGTGTACG
CGAACGATGTCCAGCACATCATTCTAGATAATCTGCAGTTCATGCTGACC
CGGGACGCGCACGAAGGACGAGGAACGAAACGAGCAGGACCATGGGACAA
GTTTGACGCCCAGGCGAGTTTGTCTTGA
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