mRNA_H-elongata_contig62915.13870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62915.13870.1
Unique NamemRNA_H-elongata_contig62915.13870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A6H5KI44_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI44_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 1.400e-89
Identity = 203/394 (51.52%), Postives = 228/394 (57.87%), Query Frame = 1
Query:  184 ARDGSGSTAVVAFVTAVHVIVANAGDSRAVLIMLDNP-------------------------------------------GTGSESGSGAS---------KMENSETGSTENSEG----GTRPC---------DSVRLEAAASPGQKDEEFEIDEGMDKILAALGAMGLREDTSKARRAGGGSDEGAVKGGSSVINPSGKRGRAVEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGSGPPPPPSTVGGRMLFGDGQ 1170
            ARDGSGSTAVV+FVT  HVIVANAGDSRA+LIM+                                                G E   GA+         K+        E  +G    G RP          DSVRLE        DE  E D G DKI   L +M L  +  +                             + VTAMSRDHTA DE E+ERVT AGGKAFEV Y + DGT  +V+RTAYD+ VEGQSV+PTRGFGD+YYKQ+K  DG+LLPPA+QVVT CPEIMVHERGSSG EE+LLLACDGVWDVFDNQD GEFLV  L+ P+  V GE LA ACDALV ECLRRGSTDNITAMAVSLGSGPPP PS+ GGR+LF DGQ
Sbjct:  759 ARDGSGSTAVVSFVTPAHVIVANAGDSRAILIMVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGVEDRKGAAETMAEALGLKLGGERNSGVEEVKGEATTGGRPAAEGEWGGLNDSVRLEDQEE--DDDEGCEFD-GADKIRELLESMMLGGEAKEXXXX-------XXXXXXXXXXXXXXXXGGLMVTAMSRDHTAADEAERERVTAAGGKAFEVPYTEPDGTTCVVVRTAYDDKVEGQSVVPTRGFGDLYYKQRKDDDGNLLPPAQQVVTSCPEIMVHERGSSGKEELLLLACDGVWDVFDNQDAGEFLVKTLDVPVGQVTGEQLALACDALVKECLRRGSTDNITAMAVSLGSGPPPRPSSAGGRVLFSDGQ 1142          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: D8LND4_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND4_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 2.700e-76
Identity = 181/384 (47.14%), Postives = 218/384 (56.77%), Query Frame = 1
Query:  184 ARDGSGSTAVVAFVTAVHVIVANAGDSRAVLIML--DNPGTGSESGSGASKMENSETGS-----------------TENSEGGTRPCDS---VRLEAAASPGQKDEEFEIDEGMDKILAALGAMGLREDTSKARRAGGGSDEGAVKGGSSVINPSGKR----GRA-----------------------------VEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGSGPPPPPSTVGGRMLFGDGQ 1170
            ARDGSGSTAVV+ VT  HVIVANAGDSRA+LIM+  D+           SK+ +   G+                  EN +G          +RL    + G ++E+ E    + ++ A     GL +      +     +EG    G+  I    +     G A                             V VTAMSRDHTA DE E+ERVT AGGKAFEV Y ++DGT  +V+RTAYD+ VEGQSV+PTRGFGD+YYKQ+                   EIMVHERGSSG EE+LLLACDGVWDVF +QD GEFLV  L+ P+  V GE LA ACDALV+ECLRRGSTDNITAMAVSLGSGPPP PS+ GGR+LF DGQ
Sbjct:  539 ARDGSGSTAVVSLVTPAHVIVANAGDSRAILIMVPPDHNSXXXXXXXXTSKVNSRSDGTKITASGXXXXXXSSRVGAENKKGAAETMAEALGLRLGGERNSGVEEEKGEEATTVGRLEAEGEGGGLNDSVRLEDQEEDDDNEGCEFDGADKIRELLESMMLGGEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVTAMSRDHTAEDEAERERVTAAGGKAFEVPYTEQDGTTCVVVRTAYDDKVEGQSVVPTRGFGDLYYKQRXXXXXXXXXXXXXXXXXXXEIMVHERGSSGQEELLLLACDGVWDVFKDQDAGEFLVKTLDVPVGQVTGEQLALACDALVNECLRRGSTDNITAMAVSLGSGPPPRPSSAGGRVLFSDGQ 922          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A835YR40_9STRA (Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR40_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.820e-33
Identity = 93/194 (47.94%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  568 VINPSGKRGRAVEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERG-SSGS--------EEILLLACDGVWDVFDNQDVGEFLVSQLER--PIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGSG 1116
            +++P G    +V +  +S DHT + E EK RV  AGG A E +   E+  E  V+R  Y    +GQSV+P+R FGD YYKQ    DG LL P +QVVT  PE+ + ER  SSGS        ++ LLLACDG+WDVF +QD GE L   L+   P     GEDLA ACDAL+ E L+R S DNIT MA+ L SG
Sbjct:  937 LVSPQGAG--SVTILPLSEDHTGQVEAEKARVIAAGG-ALEERTWTEEEVEHCVLRIKYCAEAKGQSVVPSRSFGDFYYKQCCDADGQLLSPDKQVVTAFPEVRIVERPRSSGSSPALGGVQDQYLLLACDGLWDVFSSQDAGEMLWRILQDLCPARTPTGEDLAIACDALIAEALKRKSEDNITVMAIRLASG 1127          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A7S4IS57_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IS57_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.950e-18
Identity = 105/354 (29.66%), Postives = 148/354 (41.81%), Query Frame = 1
Query:  199 GSTAVVAFVTAVHVIVANAGDSRAVLIMLDNPGTGSESGSGASKMENSETGSTENSEGGTRP--------CDSVRLEAAASPGQKDEE-FEIDEGMDK-----------------ILAALGAMGLREDTSKARRAGGGSDEGAVKGGSSVINPSGKRGRAVEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDED-------GTESMVI---RTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLER-----------PIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGSGP 1119
            GSTA+VA VT   V+VAN GD R +L+       G   G+     E ++ G   N+EG T               LE    P   +E+ FE  +G ++                         GL    ++         E   K   S   PS      V  TA+S D     + E+ER+  AG        RD D       G E  ++   +    +  +G  +  +R FGD  Y  K   D   LPP EQ V   P++ +H R  +  +  L+LACDGVWDV  N++VG+F+  +++R             ED D        D L++ECL RGSTDN+TA+ VSL   P
Sbjct:   36 GSTAIVAVVTDEAVVVANVGDCRCILVQKTKVAEG---GTPILTEEPAQGGERLNTEGRTSKGVDLSEGSSGEAPLEGDKKPRPSEEQQFEEAKGTEEKSLSDPPQXXXXXXXXXXXXXXXXXGLVTTAAE-------QPEAPEKAEGSAPTPSTAATATVSATALSEDSKPNLDEERERIERAGLMVMPDVIRDPDVVSEETEGAEDNLVTLWKVVKGDPGKGDRLGMSRAFGD--YDFKANAD---LPPEEQAVVCTPDLRIHPRDGT-MDLYLVLACDGVWDVMSNEEVGQFVHGRVDRIRSEMGRGGADGHEDADEGLWGTVADQLLEECLGRGSTDNMTAVIVSLEKAP 373          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A7S1VKM7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKM7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.750e-17
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 1
Query:  577 PSGKRGRAVEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSL 1107
            P+ KR   V V A+S DH      EK RV  AG    E  + +E G + ++ +    EN  G  +  +R FGD  YK         L   EQ V   PEI +H R +   +  L+LACDGVWDV +N  VG+F+V  +E  ++    + L +  DAL+ ECL RGS DN+TA+ V+L
Sbjct:  502 PTTKRTTTV-VQALSFDHKPDRTEEKARVEKAGLSVVEESFVEE-GIKHVIPKVQLTEN--GDRLAVSRAFGDFEYKTNPS-----LSSQEQAVICMPEIEIHRRNAK-KDIYLVLACDGVWDVMENDQVGKFVVDHVEDLVKQEATDILPQVGDALLTECLNRGSQDNMTAIVVAL 668          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A7R9ZAU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAU8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.820e-15
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  778 TRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLER----------PIEDVDGEDLARACDALVDECLR-RGSTDNITAMAVSLGS 1113
            +R FGD  YK     +G L    +Q VT  PE+ VH R   G +  L+LACDGVWDV  N++VG F+  ++E             E+ DG  +A+A D L+DEC++ RGS DN+TA+ V LGS
Sbjct:    8 SRAFGDFDYK----ANGDLSA-RDQAVTAEPEVRVHPR-DGGRDLYLVLACDGVWDVMTNEEVGRFVHEEVEALRRTSRGDGGEEEEEDGVLMAKAADRLLDECVKNRGSEDNVTALIVFLGS 124          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A7R9ZMV8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZMV8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.280e-15
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  601 VEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLE----RPIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGSGPPP 1125
            + V  MS DH  + ++E ER+  AG K  E ++ DE+  E +V       N  G  +  +R FGD  YK  K      L P EQ V   P++ +H R     +  L+LACDG+WDV  N +VG+++  +++    +P   +D   L +  DAL+  CL +GS DN++ + V+L  G  P
Sbjct:   61 INVIPMSFDH--KPDKEAERIENAGLKVQESRFIDENEKE-LVFHKIIRSN--GDQLAVSRAFGDFEYKTNK-----TLGPEEQAVIAVPDVKIHPRNVQ-VDLYLVLACDGIWDVMSNVEVGKYVSQEMDAIKTQPRR-IDSTVLPQVGDALLSTCLDKGSRDNMSVVLVALNQGAEP 227          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A812L412_9DINO (Ppm1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L412_9DINO)

HSP 1 Score: 87.8 bits (216), Expect = 6.650e-15
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = 1
Query:  607 VTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGSGPPPPPSTV 1140
            V  +S DH   +E E +R+T AGG              ++ +R      V G   + +R  GD  YK  +      LP  +Q V+  PE  VH+R ++ +++ L+LACDG+WDV +N +VG FL  ++   +++     L    D LV ECLR GS DN++ + V+L + P P P  +
Sbjct:  148 VKPLSFDHKPYNEAEAKRITEAGG--------------TVTMR-----RVNGDLAV-SRALGDYVYKHSR-----TLPAEKQQVSPEPEFTVHKRDAA-TDQFLVLACDGIWDVMENDEVGAFLQERVAAGVDN-----LGELADCLVRECLRLGSRDNMSVVLVALPAAPKPTPEAI 294          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A448ZGN4_9STRA (DNA topoisomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGN4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.450e-15
Identity = 64/178 (35.96%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  598 AVEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDE-NVEGQSVMPT-----RGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGEDLARACDALVDECLRRGSTDNITAMAVSLGS 1113
            AVE  A+S DH+     E ER+  AG +   V+   EDG ES++ +   +E + E  +   T     R FGD  +K         LP A Q V   P ++V  R    ++ +L+LACDG+WDV  NQ     ++++ E   E      L+ A DAL+ ECL R S DN++A+ VSLG+
Sbjct: 1714 AVEAIALSEDHSPGLPGEAERIAAAGFRTEAVRVAGEDGKESLIHKVVGNEASPEASTKTSTQLAVSRAFGDFEFKAN-----DTLPAAGQAVVAVPGVVVRARDPQ-TDRLLVLACDGIWDVASNQTAAGLVLARWEGTREPRTPRVLSDAADALLLECLGRESRDNLSAVLVSLGA 1885          
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Match: A0A7S2XJ05_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJ05_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.580e-14
Identity = 58/168 (34.52%), Postives = 84/168 (50.00%), Query Frame = 1
Query:  607 VTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMVIRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIMVHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGE-DLARACDALVDECLRRGSTDNITAMAVSL 1107
            V  +S DH   D  E+ R+  AGGK   V  +  DG                  +  +RG GD  +K +       LPP +Q VT CPEI+V  R SS  +E ++LACDG+WDV  N+   + + + L+      +GE D+   C+ ++D CL R S DN+T   V+L
Sbjct:   27 VLPLSFDHKPTDPPEEARIVAAGGK---VSIKRVDG-----------------DLAVSRGLGDFSFKNRPD-----LPPDQQKVTCCPEILVEPRQSS-QDEFIILACDGIWDVASNESCAKLVHAILD------EGETDIGLVCEEILDTCLERDSRDNMTVAMVTL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62915.13870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI44_9PHAE1.400e-8951.52PPM-type phosphatase domain-containing protein n=1... [more]
D8LND4_ECTSI2.700e-7647.14PPM-type phosphatase domain-containing protein n=1... [more]
A0A835YR40_9STRA6.820e-3347.94Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S4IS57_9STRA1.950e-1829.66Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1VKM7_9STRA4.750e-1738.42Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9ZAU8_9STRA2.820e-1543.09Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7R9ZMV8_9STRA5.280e-1534.08Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A812L412_9DINO6.650e-1533.15Ppm1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A448ZGN4_9STRA9.450e-1535.96DNA topoisomerase n=1 Tax=Pseudo-nitzschia multist... [more]
A0A7S2XJ05_9STRA1.580e-1434.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62915contigH-elongata_contig62915:2..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.3
Seed ortholog evalue2.7e-67
Seed eggNOG ortholog2880.D8LND4
Preferred namePP2C
KEGG koko:K01090,ko:K04457,ko:K04461,ko:K17499,ko:K17506
KEGG Pathwayko04010,ko04013,map04010,map04013
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0631@1,KOG0697@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size2786
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62915.13870.1prot_H-elongata_contig62915.13870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62915 281..1850 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.8399768-UTR-H-elongata_contig62915:1..2801622931012.8399768-UTR-H-elongata_contig62915:1..280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62915 2..280 +
1691679662.0241432-UTR-H-elongata_contig62915:1..2801691679662.0241432-UTR-H-elongata_contig62915:1..280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62915 2..280 +
1622931012.9131165-UTR-H-elongata_contig62915:1850..34631622931012.9131165-UTR-H-elongata_contig62915:1850..3463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62915 1851..3463 +
1691679662.076416-UTR-H-elongata_contig62915:1850..34631691679662.076416-UTR-H-elongata_contig62915:1850..3463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62915 1851..3463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.8627207-CDS-H-elongata_contig62915:280..7271622931012.8627207-CDS-H-elongata_contig62915:280..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62915 281..727 +
1691679662.036247-CDS-H-elongata_contig62915:280..7271691679662.036247-CDS-H-elongata_contig62915:280..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62915 281..727 +
1622931012.8795307-CDS-H-elongata_contig62915:1015..11411622931012.8795307-CDS-H-elongata_contig62915:1015..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62915 1016..1141 +
1691679662.046707-CDS-H-elongata_contig62915:1015..11411691679662.046707-CDS-H-elongata_contig62915:1015..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62915 1016..1141 +
1622931012.8952541-CDS-H-elongata_contig62915:1529..18501622931012.8952541-CDS-H-elongata_contig62915:1529..1850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62915 1530..1850 +
1691679662.0643704-CDS-H-elongata_contig62915:1529..18501691679662.0643704-CDS-H-elongata_contig62915:1529..1850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62915 1530..1850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62915.13870.1

>prot_H-elongata_contig62915.13870.1 ID=prot_H-elongata_contig62915.13870.1|Name=mRNA_H-elongata_contig62915.13870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
MLDNPGTGSESGSGASKMENSETGSTENSEGGTRPCDSVRLEAAASPGQK
DEEFEIDEGMDKILAALGAMGLREDTSKARRAGGGSDEGAVKGGSSVINP
SGKRGRAVEVTAMSRDHTARDEREKERVTLAGGKAFEVKYRDEDGTESMV
IRTAYDENVEGQSVMPTRGFGDMYYKQKKGTDGSLLPPAEQVVTVCPEIM
VHERGSSGSEEILLLACDGVWDVFDNQDVGEFLVSQLERPIEDVDGEDLA
RACDALVDECLRRGSTDNITAMAVSLGSGPPPPPSTVGGRMLFGDGQ*
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mRNA from alignment at H-elongata_contig62915:2..3463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62915.13870.1 ID=mRNA_H-elongata_contig62915.13870.1|Name=mRNA_H-elongata_contig62915.13870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3462bp|location=Sequence derived from alignment at H-elongata_contig62915:2..3463+ (Himanthalia elongata Himel1 dioecious)
GGTCTCGCGGAATTGGTTCAGCACTCCCGTCCCGCGTCAGCCCGTTCTCT CAACGCAGGCTGAATCTGGTGGAAGAATTTCCAAACCAGCGATTCACCTC TTTCGGAATGCTCTTCTTTTCCTCTCCTCCGTTTTCGCGATACCATTTCA TATCATTTCATACCATTTCATATCCTTTGATAGGCAAGAGATGGCAGCGG GAGCACCGCGGTGGTCGCGTTTGTGACAGCGGTACACGTCATCGTGGCCA ACGCCGGCGACTCACGCGCCGTGCTAATCATGCTGGACAACCCTGGCACC GGAAGCGAGAGCGGAAGCGGAGCCTCGAAGATGGAGAACAGCGAAACGGG CTCGACAGAAAACTCGGAAGGAGGCACGAGGCCTTGTGACTCCGTCCGGC TGGAGGCGGCAGCAAGCCCGGGGCAGAAAGACGAAGAGTTCGAGATCGAT GAGGGGATGGACAAGATTCTCGCCGCGCTGGGGGCGATGGGCTTGCGCGA AGACACGTCAAAGGCTCGCCGCGCTGGGGGGGGGAGTGATGAGGGGGCCG TCAAAGGGGGAAGTAGCGTGATCAACCCTTCCGGAAAAAGAGGACGCGCC GTGGAAGTCACCGCGATGAGCAGGGATCATACCGCGAGAGACGAGAGGGA GAAGGAGAGGGTCACCCTCGCGGGAGGCAAGGCGTTCGAGGTTAAATACA GGGACGAGGACGGAACAGAATCCATGGTGAGAACGGCAAGCACCAAGTTA ATAGAGGACTGAGCGGGTGGGGGACTATTAATAGCAGTCAGTTTAGACGT TTGCGCGATCGAATACGCAAGCAGTGAGAAGTAAGGGCGAAAGTTTCATT TCGGACAGACATGTCTCGTGGAAGTGAGCTGGGCTGGGCTGGACGGAGCT GGGCTTTAGCCGTGAGTGTCGAGAATCGCTGCGCTCTTTGTGAATGGGTG TCGATGTTGAGCAAGCGAAACATTCTCAAATAGTCTCGGTGTTTGAATAT ATGGGCGCACGCAGGTGATCCGAACAGCGTACGACGAAAATGTGGAGGGT CAGAGCGTGATGCCCACCAGAGGGTTCGGTGACATGTACTACAAGCAGAA GAAAGGCACCGACGGAAGCCTGTTGCCGCCGGCGGAGCAGGTGTGCTTTG AGGGCTTCTTCTCCTCCTTCTCGCCTCCTCACCTTCTCCTTTTATCCCTC CCCTCCCCTAGATCGGCAACGATATTTCGAGGCTTCGAGGTGCCTACCAC GATCGCACAGTAAAATGTATCGTGTGCAACTAATTTGTTACATTTCATGT ACGGCCGACACATAGTGCATGTCAACGGCGGTCGGCGGTCGCTATCATGT ATCGGCGGTCGCTATCGGACAGACAAATAGGCAGACTGGGATGTGCCACA CTTCAATTTATTGAACCACACGACTGCCTTGTTTCCACGGAGCGGTTTTA ATATCCCTCAAAACCCCCATCTAACTGATCTTTTGTCCGCCAACTTTCCG TGACCCGCACTACCACGGGGGGGAGAAGGTGGTAACCGTGTGCCCGGAGA TCATGGTTCACGAACGTGGCTCCAGCGGAAGCGAGGAGATATTGCTTTTG GCTTGCGATGGAGTTTGGGACGTTTTCGACAACCAAGACGTCGGAGAGTT CTTGGTCTCGCAGCTGGAACGACCCATCGAGGACGTGGACGGCGAGGACC TCGCCCGCGCATGCGACGCTCTCGTGGACGAGTGCTTGCGGCGAGGCTCG ACCGACAATATCACCGCCATGGCTGTCTCTCTCGGATCCGGCCCGCCCCC GCCCCCCTCTACCGTCGGCGGGAGGATGCTTTTCGGCGACGGGCAGTAGC CGGGGTGAAGAAGACCACACGTGACCCGTGTCGAGTTCGGCTGTATTTTG AGAGGTAACAGGTGCTCGCAGGTCATTTAGATTGCACATGGAAGTAATGG GGGAAAGTAGGGGAAGTAAGTGTTGAAGTGGCCGAACGGTTTCCGATAAG CCCTCGGAGGTATTATTTTAGTCTGGTGTGCTCTGCTCTGGTGTGGTGTG ATTTAGCTAGTCTATTTAGATAAAACGGAGGAAAAGTAAACTCCTAGACA ATCTCTCTCTTCGTGACCTCAGGCCCAGCTTGCCGCTGTTATGCAGGGGA TCTGTCGTCAGTGGGAGGATGCTCTTCGGCAGTAGGCACTAGGAAGTAGT CGAGGGACATCGAGGGCTTTCTTTTGGCGACTACGGCACGGGAAGACGTA AGAAAACACACGTAACACGTGTCGAGTTAGTTCGGCTGTCGTTTGGGTTA GGGTTAGTGCCCTAGAGGTAGCCGTTGCTCGCAGGTCGTTTGAATTGAAT TGTACATGGAACGTGTAAGGGAGTAATCGGGGGGGGGGGTTGCGGGAAGC AGGGTGTTGAACTGGCTGAAACGCTGCCGATAAGCGCTCGAAAGCATTGA GCATAGCTTTGTGCACTCTGCTCCTCCAGGGAAGGGAAGGAAAGGCAGAG GGTGGGGGGGGGTAAGGTAAGTAAATCCCTAGACAGTATATCTCTTGGTG GCATCAGGGCCAGAATCTCCCCCACTATAGCCGACCATACCCCACCATAG CCGACCATAGGGCATAGCTTGCCGCCGTTACGCGGGGATCAAAATAAGCT GGGCCTGCCGCATAACACCTCATTTTAAGAGTAGTTGTTCCGTATTGGAG TATTGGAGATGATCCACCTCATGGGGGGATATGTCACAGAACACTCACAC ATACACACATACCCTTGTTTTGCGTTGAGCACGTGATAACGTCATCGCGC ACTGGCGCGTATATACACACCTAAGCTAAGAAGAGCGTTCGCCTGGTGGG GGTATCTAGGGTCAACGTTACAAGTGGGGGGAAATTTAATCCGTCGCGCG GGTGTTGAAGGCGAAGAAGGGGTTACTTCGCTGTGTTGTGTCATCTCGAA GAGGGAGAAAAAAAGAAGAAAAAAAATCGTTCCTTAAGGGTGTAATATCG TACCGTACCGTCGTCCTTTTCAATCCAGTTGGATGTACAGTACCGTACCG TACCACCTATCATGGGGCAGCGCAAGCATGCGGGTAGGCGAGCTTGTTTT TTGTTTTCCTCTATTCTATTGTTTGATGAATGTTGATGAATGTTCCTCCC TATCGCCTTTCTATTAAAATTGATATGAACTAATTCAAACCCTCCGAACA GGGGACCAAATATCGCCAGATTCGAATGGGTACAATATTTTACTTTTGAG CATAAAATTGTCACAGTATGTGATTAATCGTGTTCCCCATCGGGGATACT AGGTGACGTGGTCGTAGTAGTCGCCGCCGCCATGAGTCACGGGAAAAGCG CGGCTTGTCATACAGCGGTAGACGCCCTTTGAGGCGTTCAGTTGGCGTTT GGCTGATCTCCAAACAAAGAGAAGCGTCTGACCGATCTCCCACGGGCTAG CGCCTGACCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig62915:2..3463+

>mRNA_H-elongata_contig62915.13870.1 ID=mRNA_H-elongata_contig62915.13870.1|Name=mRNA_H-elongata_contig62915.13870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig62915:2..3463+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGACAACCCTGGCACCGGAAGCGAGAGCGGAAGCGGAGCCTCGAA
GATGGAGAACAGCGAAACGGGCTCGACAGAAAACTCGGAAGGAGGCACGA
GGCCTTGTGACTCCGTCCGGCTGGAGGCGGCAGCAAGCCCGGGGCAGAAA
GACGAAGAGTTCGAGATCGATGAGGGGATGGACAAGATTCTCGCCGCGCT
GGGGGCGATGGGCTTGCGCGAAGACACGTCAAAGGCTCGCCGCGCTGGGG
GGGGGAGTGATGAGGGGGCCGTCAAAGGGGGAAGTAGCGTGATCAACCCT
TCCGGAAAAAGAGGACGCGCCGTGGAAGTCACCGCGATGAGCAGGGATCA
TACCGCGAGAGACGAGAGGGAGAAGGAGAGGGTCACCCTCGCGGGAGGCA
AGGCGTTCGAGGTTAAATACAGGGACGAGGACGGAACAGAATCCATGATG
CTGGACAACCCTGGCACCGGAAGCGAGAGCGGAAGCGGAGCCTCGAAGAT
GGAGAACAGCGAAACGGGCTCGACAGAAAACTCGGAAGGAGGCACGAGGC
CTTGTGACTCCGTCCGGCTGGAGGCGGCAGCAAGCCCGGGGCAGAAAGAC
GAAGAGTTCGAGATCGATGAGGGGATGGACAAGATTCTCGCCGCGCTGGG
GGCGATGGGCTTGCGCGAAGACACGTCAAAGGCTCGCCGCGCTGGGGGGG
GGAGTGATGAGGGGGCCGTCAAAGGGGGAAGTAGCGTGATCAACCCTTCC
GGAAAAAGAGGACGCGCCGTGGAAGTCACCGCGATGAGCAGGGATCATAC
CGCGAGAGACGAGAGGGAGAAGGAGAGGGTCACCCTCGCGGGAGGCAAGG
CGTTCGAGGTTAAATACAGGGACGAGGACGGAACAGAATCCATGGTGATC
CGAACAGCGTACGACGAAAATGTGGAGGGTCAGAGCGTGATGCCCACCAG
AGGGTTCGGTGACATGTACTACAAGCAGAAGAAAGGCACCGACGGAAGCC
TGTTGCCGCCGGCGGAGCAGGTGATCCGAACAGCGTACGACGAAAATGTG
GAGGGTCAGAGCGTGATGCCCACCAGAGGGTTCGGTGACATGTACTACAA
GCAGAAGAAAGGCACCGACGGAAGCCTGTTGCCGCCGGCGGAGCAGGTGG
TAACCGTGTGCCCGGAGATCATGGTTCACGAACGTGGCTCCAGCGGAAGC
GAGGAGATATTGCTTTTGGCTTGCGATGGAGTTTGGGACGTTTTCGACAA
CCAAGACGTCGGAGAGTTCTTGGTCTCGCAGCTGGAACGACCCATCGAGG
ACGTGGACGGCGAGGACCTCGCCCGCGCATGCGACGCTCTCGTGGACGAG
TGCTTGCGGCGAGGCTCGACCGACAATATCACCGCCATGGCTGTCTCTCT
CGGATCCGGCCCGCCCCCGCCCCCCTCTACCGTCGGCGGGAGGATGCTTT
TCGGCGACGGGCAGTAGGTGGTAACCGTGTGCCCGGAGATCATGGTTCAC
GAACGTGGCTCCAGCGGAAGCGAGGAGATATTGCTTTTGGCTTGCGATGG
AGTTTGGGACGTTTTCGACAACCAAGACGTCGGAGAGTTCTTGGTCTCGC
AGCTGGAACGACCCATCGAGGACGTGGACGGCGAGGACCTCGCCCGCGCA
TGCGACGCTCTCGTGGACGAGTGCTTGCGGCGAGGCTCGACCGACAATAT
CACCGCCATGGCTGTCTCTCTCGGATCCGGCCCGCCCCCGCCCCCCTCTA
CCGTCGGCGGGAGGATGCTTTTCGGCGACGGGCAGTAG
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