mRNA_H-elongata_contig62644.13839.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5L7T1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T1_9PHAE) HSP 1 Score: 212 bits (540), Expect = 3.870e-64 Identity = 137/255 (53.73%), Postives = 164/255 (64.31%), Query Frame = 1
Query: 124 MHGCCGRGIGEEGFGQQRECTDCQRITPGDKSGSSSSPMEVDGDGEQENXXXXXXXXXXXXXXXXXXXXXXXXVAG-----------PVGSAAXGAAPKKAKKSKPGSDHGKNKLTPAQRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFT-ATKIGLSGIMIQTQATKFASEMG-IQFTASNGWLHRFLNRYSFKHVDLHGEAGDVD 849
MHG CGRGIGEEGFGQQRE T CQ+ T K G+ +SPMEVD G+ E+XXXXXXXXXXXX G G A K+ + SKPG + GKNK + QRL+I++E + G KRS VA ++N+GTSYISKLM PE IA LE RDMELNQDALR P PVH +E++ + + T AT+IG+SG MIQ QA K A++MG F A++GWLHRFL RYSF HV LHGE GD D
Sbjct: 1 MHGFCGRGIGEEGFGQQRERTYCQKRTTSGKIGTGTSPMEVDSSGDNEDXXXXXXXXXXXXLLGCVQSLGGAAGLGGXXXXXXXXXXAAGDGTVSVA-KEVRMSKPGRNTGKNKFSMTQRLQIVNEAQGGAKRSMVAAKWNVGTSYISKLMNPEKIAELENVRDMELNQDALRAPKPVHDEVEEKHASGSRSHEHALTQATRIGVSGSMIQAQALKIAAQMGKTNFKATHGWLHRFLKRYSFTHVQLHGEPGDED 254
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE) HSP 1 Score: 216 bits (551), Expect = 1.010e-63 Identity = 128/284 (45.07%), Postives = 157/284 (55.28%), Query Frame = 1
Query: 1 MQRFLQSAGASPASGLKPCEEPTCSIPG-LVSGVHLCPCGRRMHGCCGRGIGEEGFGQQRECTDCQRITPGDKSGSSSSPMEVDGDGEQENXXXXXXXXXXXXXXXXXXXXXXXXVAGPVGSAAXGAAPKKA--------------------------------------------------------KKSKPGSDHGKNKLTPAQRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARF 681
M+RFL SAG S A+GL+PC EPTC LVS VH CPCGR MH CGRGIGEEG+GQQREC+DCQ+ G ++GSSSSPMEVD + +++ AG GSA AAP + +K+KPGSDHGKNKLT QRL+I+ ++ G++RS VA ++ +G +YI+KLMKPE IA+LE++RDMELN DA R PTPVH GLE RL WIKIAR RF
Sbjct: 1 MERFLPSAGGSSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGAQAGSSSSPMEVDAEENEQDSRSTTQPFRVEEPSVGGKGKRPAADAGVGGSAGKRAAPGRGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKAKPGSDHGKNKLTVGQRLQIVRAVQGGQQRSKVAGDFGVGKAYITKLMKPEMIASLEKSRDMELNLDAKRTPTPVHAGLEARLNQWIKIARQRF 284
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE) HSP 1 Score: 213 bits (542), Expect = 1.390e-60 Identity = 104/146 (71.23%), Postives = 122/146 (83.56%), Query Frame = 1
Query: 418 HGKNKLTPAQRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFTATKIGLSGIMIQTQATKFASEMGIQ-FTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
HG+NKLT QRL+++ +++AG++RS VA Y + TSYISKLMKP+ +A L ++RD ELN DALR PTPVH LEKRLL WIK+ARARF TKIGLSGIMIQTQATKFASEMG + FTAS GWLHRFL RY FKH++LHGEAGDVDK
Sbjct: 165 HGQNKLTTGQRLQLVRDVQAGKQRSKVAATYGVTTSYISKLMKPDKLAELHKSRDSELNLDALRTPTPVHDDLEKRLLQWIKVARARFETTKIGLSGIMIQTQATKFASEMGKKDFTASKGWLHRFLKRYGFKHINLHGEAGDVDK 310
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.900e-54 Identity = 121/287 (42.16%), Postives = 141/287 (49.13%), Query Frame = 1
Query: 1 MQRFLQSAGASPASGLKPCEEPTCSIPGL-VSGVHLCPCGRRMHGCCGRGIGEEGFGQQRECTDCQRITPGDKSGSSSSPMEVDGDGEQE-NXXXXXXXXXXXXXXXXXXXXXXXXVAGPVGSAAXGAAPKKAKKSKPGSDHGKNKLTPAQRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFTATKIGLSGIMIQTQATKFASEMG-IQFTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
M RFL S G + K C EPTC++ L ++ VH CPCG+ MHG CGRGIGEEGFGQQRECTDCQR T K G+ +SPMEV+ + E N AG G A G A +E+ G QDALR P PVH +E++L WIKIARARF TKIG+SG MIQ QA K A++MG F A++GWLHRFL RYSF HV LHGEAGDVDK
Sbjct: 1 MDRFLPSIGGPTHAAKKTCGEPTCAMRSLLITAVHQCPCGQPMHGFCGRGIGEEGFGQQRECTDCQRRTTTGKIGTGTSPMEVNSSSDNEDNSSRTRQRAGGKESEFARKGKRPQRTAGRGGGGAAGGA---------------------------AEVPRGE----------------------------XXXXXXXXXQDALRAPKPVHDEVEEKLRKWIKIARARFNETKIGVSGSMIQAQALKIAAQMGKTNFKATSGWLHRFLIRYSFTHVQLHGEAGDVDK 232
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5JPF0_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF0_9PHAE) HSP 1 Score: 179 bits (455), Expect = 5.010e-52 Identity = 89/137 (64.96%), Postives = 105/137 (76.64%), Query Frame = 1
Query: 445 QRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFTATKIGLSGIMIQTQATKFASEMG-IQFTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
QRL+I+ E++ G RS VA + N+GTSYI KLM PE +A LE+ RDMELNQDALR P PVH +E++L WIKIARARF ATKIG+SG MIQ QA + A++MG F A+ GWLHRFL RYSF V LHGEAGDVDK
Sbjct: 3 QRLQIVKEVQGGATRSMVAAKRNVGTSYIGKLMMPEKVAELEKVRDMELNQDALRAPKPVHDEVEEKLRKWIKIARARFNATKIGVSGSMIQAQALEIAAQMGKTNFRATKGWLHRFLKRYSFTRVQLHGEAGDVDK 139
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE) HSP 1 Score: 188 bits (477), Expect = 8.390e-52 Identity = 93/137 (67.88%), Postives = 109/137 (79.56%), Query Frame = 1
Query: 445 QRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFTATKIGLSGIMIQTQATKFASEMG-IQFTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
QRL I+ E++ G KRS VA ++N+GTSYISKLM PE IA LE+ RDMELNQDALR P PVH +E++L WIKIARARF ATK+G+SG MIQ QA K A++MG F A+NGWL+RFL RYSF HV LHGEAGDVDK
Sbjct: 3 QRLHIVKEVQGGAKRSMVAAKWNVGTSYISKLMNPEKIAELEKVRDMELNQDALRAPKPVHDEVEEKLRKWIKIARARFDATKMGVSGSMIQAQALKIAAQMGKTNFKATNGWLYRFLKRYSFTHVQLHGEAGDVDK 139
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5KZ62_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ62_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.630e-47 Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query: 496 VAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFTATKIGLSGIMIQTQATKFASEMG-IQFTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
VA + N+GTSYISKLM PE IA LE+ RDMELNQDALR P PVH +E++L WIKIARARF ATKIG+ MIQ QA K A++MG F A+NGWLHRFL RYSF +V LHGEAGD+DK
Sbjct: 2 VAAKRNVGTSYISKLMNPEKIAELEKFRDMELNQDALRAPKPVHDEVEEKLRKWIKIARARFNATKIGVRSSMIQAQALKIAAQMGKTNFKATNGWLHRFLKRYSFTYVQLHGEAGDMDK 121
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE) HSP 1 Score: 175 bits (444), Expect = 2.220e-46 Identity = 97/191 (50.79%), Postives = 117/191 (61.26%), Query Frame = 1
Query: 397 KSKPGSDHGKNKLTPAQRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFT---------------------------------ATKIGLSGIMIQTQATKFASEMGI-QFTASNGWLHRFLNRYSFKHVDLHGEAGDVDKKAAEK 867
K+K GSDHG+NKLT AQR KI+ ++ GR+RS VA +YN+G +Y+SKLMKP IAALE+ARD+ELN A R PTP+H LE TK+GLSGIMIQTQATKFA+EM + FTASNGWLHRF +RY H++LHGEAGDV+K AAEK
Sbjct: 112 KAKSGSDHGENKLTIAQRWKIVEAVRGGRQRSKVAADYNVGKAYVSKLMKPPMIAALEKARDIELNMGAKRTPTPIHAELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKLGLSGIMIQTQATKFAAEMNVTNFTASNGWLHRFFSRYGLVHINLHGEAGDVNKAAAEK 302
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.010e-43 Identity = 81/105 (77.14%), Postives = 89/105 (84.76%), Query Frame = 1
Query: 541 MKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARFTATKIGLSGIMIQTQATKFASEMGIQ-FTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
MKP+ +A L ++RD ELN DALR PTPVH LEKRLL WIK+ARARF TKIGLSGIMIQTQATKFASEMG + FTAS GWLHRFL RY FKH++LHGEAGDVDK
Sbjct: 1 MKPDKLAELHKSRDSELNLDALRTPTPVHDDLEKRLLQWIKVARARFETTKIGLSGIMIQTQATKFASEMGKKDFTASKGWLHRFLKRYGFKHINLHGEAGDVDK 105
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Match: A0A6H5K0Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y4_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.140e-43 Identity = 95/186 (51.08%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 373 GAAPKKAKKSKPGSDHGKNKLTPAQRLKIISEIKAGRKRSTVAEEYNIGTSYISKLMKPEAIAALEEARDMELNQDALRVPTPVHTGLEKRLLAWIKIARARF-TATKIGL----SGIMIQT--------------------QATKFASEMG-IQFTASNGWLHRFLNRYSFKHVDLHGEAGDVDK 852
G+ K+ + SKPG + GKNKL+ QRL+I+ E++ G KRS VA ++++GT Y SK M PE IA L++ RDMELNQDALR P PVH +E++L WIKIARARF +T L SG + QA K A++MG F A+NGWLHRFL RYSF HV LHGEAGDVDK
Sbjct: 74 GSVAKEVRVSKPGRNTGKNKLSMTQRLRIVKEVQGGTKRSMVAAKWSVGTWYTSKFMNPEKIAELKKIRDMELNQDALRAPRPVHDEVEEKLRKWIKIARARFDVSTHFALVMCWSGYNLVAYTPITFRPYTSSHSRPSCWAQALKIAAQMGKTNFKATNGWLHRFLKRYSFTHVQLHGEAGDVDK 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62644.13839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62644.13839.1 >prot_H-elongata_contig62644.13839.1 ID=prot_H-elongata_contig62644.13839.1|Name=mRNA_H-elongata_contig62644.13839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp MQRFLQSAGASPASGLKPCEEPTCSIPGLVSGVHLCPCGRRMHGCCGRGIback to top mRNA from alignment at H-elongata_contig62644:1607..3295+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62644.13839.1 ID=mRNA_H-elongata_contig62644.13839.1|Name=mRNA_H-elongata_contig62644.13839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-elongata_contig62644:1607..3295+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62644:1607..3295+ >mRNA_H-elongata_contig62644.13839.1 ID=mRNA_H-elongata_contig62644.13839.1|Name=mRNA_H-elongata_contig62644.13839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig62644:1607..3295+ (Himanthalia elongata Himel1 dioecious)back to top |