mRNA_H-elongata_contig6256.13826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6256.13826.1
Unique NamemRNA_H-elongata_contig6256.13826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6256.13826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6256contigH-elongata_contig6256:7762..8065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.1929996-CDS-H-elongata_contig6256:7761..80641622931008.1929996-CDS-H-elongata_contig6256:7761..8064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6256 7762..8064 +
1691679660.223059-CDS-H-elongata_contig6256:7761..80641691679660.223059-CDS-H-elongata_contig6256:7761..8064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6256 7762..8064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.2113118-UTR-H-elongata_contig6256:8064..80651622931008.2113118-UTR-H-elongata_contig6256:8064..8065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6256 8065..8065 +
1691679660.2331333-UTR-H-elongata_contig6256:8064..80651691679660.2331333-UTR-H-elongata_contig6256:8064..8065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6256 8065..8065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6256.13826.1prot_H-elongata_contig6256.13826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6256 7762..8064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6256.13826.1

>prot_H-elongata_contig6256.13826.1 ID=prot_H-elongata_contig6256.13826.1|Name=mRNA_H-elongata_contig6256.13826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MQVPLAGCSVLLNSHTRPRTNEHRFPFSDDVNTSSQPLNGTVFVSTTEDP
ARSRRTEFFCCLSSHNCTAHSTLGHDGLILPKAVKKRHNLAPTVLWIFPL
*
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mRNA from alignment at H-elongata_contig6256:7762..8065+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6256.13826.1 ID=mRNA_H-elongata_contig6256.13826.1|Name=mRNA_H-elongata_contig6256.13826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=304bp|location=Sequence derived from alignment at H-elongata_contig6256:7762..8065+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGCCTTTGGCGGGTTGCAGTGTGCTCCTTAATTCGCATACTCG
TCCACGAACGAACGAACATCGTTTTCCCTTCTCTGACGACGTAAATACTA
GCAGCCAACCACTCAACGGCACCGTCTTTGTTTCCACCACAGAGGACCCC
GCTAGGTCGAGAAGGACGGAGTTCTTTTGCTGCCTTTCCAGCCATAATTG
CACCGCGCACTCAACCCTTGGTCATGATGGTCTGATTTTGCCAAAAGCGG
TTAAGAAAAGACACAATTTGGCTCCCACAGTTCTGTGGATCTTCCCACTC
TAGC
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Coding sequence (CDS) from alignment at H-elongata_contig6256:7762..8065+

>mRNA_H-elongata_contig6256.13826.1 ID=mRNA_H-elongata_contig6256.13826.1|Name=mRNA_H-elongata_contig6256.13826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6256:7762..8065+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGCCTTTGGCGGGTTGCAGTGTGCTCCTTAATTCGCATACTCG
TCCACGAACGAACGAACATCGTTTTCCCTTCTCTGACGACGTAAATACTA
GCAGCCAACCACTCAACGGCACCGTCTTTGTTTCCACCACAGAGGACCCC
GCTAGGTCGAGAAGGACGGAGTTCTTTTGCTGCCTTTCCAGCCATAATTG
CACCGCGCACTCAACCCTTGGTCATGATGGTCTGATTTTGCCAAAAGCGG
TTAAGAAAAGACACAATTTGGCTCCCACAGTTCTGTGGATCTTCCCACTC
TAGATGCAGGTGCCTTTGGCGGGTTGCAGTGTGCTCCTTAATTCGCATAC
TCGTCCACGAACGAACGAACATCGTTTTCCCTTCTCTGACGACGTAAATA
CTAGCAGCCAACCACTCAACGGCACCGTCTTTGTTTCCACCACAGAGGAC
CCCGCTAGGTCGAGAAGGACGGAGTTCTTTTGCTGCCTTTCCAGCCATAA
TTGCACCGCGCACTCAACCCTTGGTCATGATGGTCTGATTTTGCCAAAAG
CGGTTAAGAAAAGACACAATTTGGCTCCCACAGTTCTGTGGATCTTCCCA
CTCTAG
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