mRNA_H-elongata_contig62412.13814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62412.13814.1
Unique NamemRNA_H-elongata_contig62412.13814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: D8LD78_ECTSI (Acyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD78_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.320e-18
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEV 135
            ELFLS+P EERL+VGKRKGFIKLAM+TGSEV+PCYYFGNT  LE+
Sbjct:  183 ELFLSNPAEERLYVGKRKGFIKLAMQTGSEVIPCYYFGNTTCLEI 227
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A835YX01_9STRA (Acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX01_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.710e-11
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEV 135
            ELFLS P EERLF+ KR GF+KLAM+TGS+V+P Y FGNT  L V
Sbjct:  204 ELFLSHPSEERLFIAKRTGFLKLAMQTGSDVIPWYLFGNTSTLVV 248
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S0PXT3_9EUKA (Acyltransferase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PXT3_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 3.200e-11
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEVRVTSP 150
            ELF SSP  E +++ KRKGFIKLA+RTG++V+P Y+FGNT  L V    P
Sbjct:  204 ELFASSPAREAVYLKKRKGFIKLALRTGADVLPVYFFGNTTVLSVLTAGP 253
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S1VDB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VDB6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.410e-11
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEV 135
            ELF SSP EER+F+ KRKGFIKLA+R G ++VP Y FGNT  L V
Sbjct:  193 ELFRSSPTEERVFLSKRKGFIKLALREGVDIVPVYLFGNTTVLTV 237
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S2PH91_9STRA (Acyltransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH91_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.410e-11
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEVRVTSP 150
            ELF  S  EERL++ KRKGFIK+A+R G E++P Y+FGNT  L V  T P
Sbjct:  224 ELFRCSQTEERLYLSKRKGFIKIALREGVEIIPAYFFGNTSVLSVVTTGP 273
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S2K2P5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2P5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.570e-11
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEV 135
            ELF SS  EERL++ KRKGFIKLA+R G EV P Y+FGNT AL +
Sbjct:   20 ELFQSSRDEERLYLSKRKGFIKLALREGVEVCPVYFFGNTSALSI 64
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S0AX97_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AX97_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.070e-11
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEVRVTSP 150
            ELF S   EERL++ KRKGFIK+A+R G++++PC+ FGNTV L V    P
Sbjct:   13 ELFKSCLEEERLYLSKRKGFIKIALREGADILPCFMFGNTVVLSVLKHGP 62
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A812R5N3_SYMMI (DGAT2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R5N3_SYMMI)

HSP 1 Score: 62.4 bits (150), Expect = 2.130e-10
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEVRVTS 147
            ELF +S  EE LF+  RKGFIKLA+RTG+++VP Y+FGNT  L V  +S
Sbjct:  113 ELFKTSDTEEILFINSRKGFIKLALRTGADIVPMYFFGNTSVLSVLKSS 161
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S1GMT6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMT6_CYCTE)

HSP 1 Score: 61.2 bits (147), Expect = 2.960e-10
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEV 135
            ELF SS  EERLF+ KRKGFIKLA+R G ++ P Y FGNT AL +
Sbjct:   47 ELFKSSRTEERLFLSKRKGFIKLALREGVDICPAYLFGNTSALTI 91
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BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Match: A0A7S4FD25_CHRCT (Acyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FD25_CHRCT)

HSP 1 Score: 62.8 bits (151), Expect = 3.160e-10
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEVRVTSP 150
            ELF SS   E +++ KRKGFIKLA+RTG +V+P Y+FGNT  L V    P
Sbjct:  233 ELFASSSQREAVYLNKRKGFIKLALRTGGDVIPAYFFGNTTVLSVLKAGP 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62412.13814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD78_ECTSI6.320e-1882.22Acyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A835YX01_9STRA1.710e-1168.89Acyltransferase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S0PXT3_9EUKA3.200e-1158.00Acyltransferase n=1 Tax=Coccolithus braarudii TaxI... [more]
A0A7S1VDB6_9STRA4.410e-1166.67Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2PH91_9STRA6.410e-1158.00Acyltransferase n=1 Tax=Leptocylindrus danicus Tax... [more]
A0A7S2K2P5_9STRA6.570e-1166.67Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S0AX97_9STRA8.070e-1156.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A812R5N3_SYMMI2.130e-1059.18DGAT2 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S1GMT6_CYCTE2.960e-1064.44Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4FD25_CHRCT3.160e-1056.00Acyltransferase n=1 Tax=Chrysotila carterae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62412contigH-elongata_contig62412:2220..2369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LD78
EggNOG free text desc.2-acylglycerol O-acyltransferase activity
EggNOG OGsKOG0831@1,KOG0831@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionmono-or diacylglycerol acyltransferase type 2
Ec32 orthologEc-05_001450.1
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.3703947-CDS-H-elongata_contig62412:2219..23691622931006.3703947-CDS-H-elongata_contig62412:2219..2369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62412 2220..2369 +
1691679659.5019045-CDS-H-elongata_contig62412:2219..23691691679659.5019045-CDS-H-elongata_contig62412:2219..2369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62412 2220..2369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62412.13814.1prot_H-elongata_contig62412.13814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62412 2220..2369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62412.13814.1

>prot_H-elongata_contig62412.13814.1 ID=prot_H-elongata_contig62412.13814.1|Name=mRNA_H-elongata_contig62412.13814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
ELFLSSPLEERLFVGKRKGFIKLAMRTGSEVVPCYYFGNTVALEVRVTSP
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mRNA from alignment at H-elongata_contig62412:2220..2369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62412.13814.1 ID=mRNA_H-elongata_contig62412.13814.1|Name=mRNA_H-elongata_contig62412.13814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig62412:2220..2369+ (Himanthalia elongata Himel1 dioecious)
GAGCTATTTTTGTCCAGTCCTCTGGAGGAGCGGCTGTTCGTGGGGAAGAG
GAAGGGCTTCATCAAGCTCGCCATGCGCACAGGAAGCGAGGTCGTGCCTT
GCTACTACTTTGGGAACACCGTGGCGTTAGAGGTGCGGGTGACGTCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig62412:2220..2369+

>mRNA_H-elongata_contig62412.13814.1 ID=mRNA_H-elongata_contig62412.13814.1|Name=mRNA_H-elongata_contig62412.13814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig62412:2220..2369+ (Himanthalia elongata Himel1 dioecious)
GAGCTATTTTTGTCCAGTCCTCTGGAGGAGCGGCTGTTCGTGGGGAAGAG
GAAGGGCTTCATCAAGCTCGCCATGCGCACAGGAAGCGAGGTCGTGCCTT
GCTACTACTTTGGGAACACCGTGGCGTTAGAGGTGCGGGTGACGTCCCCC
GAGCTATTTTTGTCCAGTCCTCTGGAGGAGCGGCTGTTCGTGGGGAAGAG
GAAGGGCTTCATCAAGCTCGCCATGCGCACAGGAAGCGAGGTCGTGCCTT
GCTACTACTTTGGGAACACCGTGGCGTTAGAGGTGCGGGTGACGTCCCCC
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