mRNA_H-elongata_contig6231.13803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6231.13803.1
Unique NamemRNA_H-elongata_contig6231.13803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6231.13803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6231contigH-elongata_contig6231:3465..3873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6231.13803.1prot_H-elongata_contig6231.13803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6231 3478..3801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.3282154-UTR-H-elongata_contig6231:3464..34771622931005.3282154-UTR-H-elongata_contig6231:3464..3477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6231 3465..3477 +
1691679659.0879202-UTR-H-elongata_contig6231:3464..34771691679659.0879202-UTR-H-elongata_contig6231:3464..3477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6231 3465..3477 +
1622931005.3608966-UTR-H-elongata_contig6231:3801..38731622931005.3608966-UTR-H-elongata_contig6231:3801..3873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6231 3802..3873 +
1691679659.1033335-UTR-H-elongata_contig6231:3801..38731691679659.1033335-UTR-H-elongata_contig6231:3801..3873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6231 3802..3873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.3463185-CDS-H-elongata_contig6231:3477..38011622931005.3463185-CDS-H-elongata_contig6231:3477..3801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6231 3478..3801 +
1691679659.0955453-CDS-H-elongata_contig6231:3477..38011691679659.0955453-CDS-H-elongata_contig6231:3477..3801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6231 3478..3801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6231.13803.1

>prot_H-elongata_contig6231.13803.1 ID=prot_H-elongata_contig6231.13803.1|Name=mRNA_H-elongata_contig6231.13803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MEKQTIEANRYVIDIKKLCISNGCCRSSSFDVSGSVIKKYCADYSLENMD
FGTPQKESRVRKRAPEPAAAGVPVLQTKATNKYKQPRSTAVSDTNNLKVE
VSISLSY*
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mRNA from alignment at H-elongata_contig6231:3465..3873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6231.13803.1 ID=mRNA_H-elongata_contig6231.13803.1|Name=mRNA_H-elongata_contig6231.13803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=409bp|location=Sequence derived from alignment at H-elongata_contig6231:3465..3873+ (Himanthalia elongata Himel1 dioecious)
CGATGGATACTTGATGGAGAAGCAGACTATAGAAGCCAATCGGTATGTAA
TTGATATCAAGAAGCTTTGCATCTCCAACGGATGCTGCAGGAGTTCGAGC
TTCGACGTTTCTGGCAGCGTGATAAAGAAGTATTGCGCCGATTATTCTTT
GGAGAATATGGATTTTGGGACTCCACAAAAAGAGTCTAGGGTCAGGAAGC
GGGCGCCCGAGCCTGCTGCAGCAGGAGTACCCGTTTTGCAGACAAAGGCG
ACTAACAAGTATAAACAACCTCGTTCTACGGCGGTATCAGATACAAACAA
TTTAAAGGTTGAGGTATCGATATCTCTATCCTACTAGATAATTGCTTAGA
AATGGAATGTTGCAGATGATATACTCGAGAGACCAATATGATATTTTAGT
CCTCCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig6231:3465..3873+

>mRNA_H-elongata_contig6231.13803.1 ID=mRNA_H-elongata_contig6231.13803.1|Name=mRNA_H-elongata_contig6231.13803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig6231:3465..3873+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAAGCAGACTATAGAAGCCAATCGGTATGTAATTGATATCAAGAA
GCTTTGCATCTCCAACGGATGCTGCAGGAGTTCGAGCTTCGACGTTTCTG
GCAGCGTGATAAAGAAGTATTGCGCCGATTATTCTTTGGAGAATATGGAT
TTTGGGACTCCACAAAAAGAGTCTAGGGTCAGGAAGCGGGCGCCCGAGCC
TGCTGCAGCAGGAGTACCCGTTTTGCAGACAAAGGCGACTAACAAGTATA
AACAACCTCGTTCTACGGCGGTATCAGATACAAACAATTTAAAGGTTGAG
GTATCGATATCTCTATCCTACTAGATGGAGAAGCAGACTATAGAAGCCAA
TCGGTATGTAATTGATATCAAGAAGCTTTGCATCTCCAACGGATGCTGCA
GGAGTTCGAGCTTCGACGTTTCTGGCAGCGTGATAAAGAAGTATTGCGCC
GATTATTCTTTGGAGAATATGGATTTTGGGACTCCACAAAAAGAGTCTAG
GGTCAGGAAGCGGGCGCCCGAGCCTGCTGCAGCAGGAGTACCCGTTTTGC
AGACAAAGGCGACTAACAAGTATAAACAACCTCGTTCTACGGCGGTATCA
GATACAAACAATTTAAAGGTTGAGGTATCGATATCTCTATCCTACTAG
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