mRNA_H-elongata_contig623.13802.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig623.13802.1
Unique NamemRNA_H-elongata_contig623.13802.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig623.13802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig623contigH-elongata_contig623:3072..6284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2017
Cds size1398
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig623.13802.1prot_H-elongata_contig623.13802.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig623 3667..5781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.1983929-UTR-H-elongata_contig623:3071..31181622931005.1983929-UTR-H-elongata_contig623:3071..3118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig623 3072..3118 +
1691679659.0408177-UTR-H-elongata_contig623:3071..31181691679659.0408177-UTR-H-elongata_contig623:3071..3118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig623 3072..3118 +
1622931005.2241597-UTR-H-elongata_contig623:3597..36661622931005.2241597-UTR-H-elongata_contig623:3597..3666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig623 3598..3666 +
1691679659.0520809-UTR-H-elongata_contig623:3597..36661691679659.0520809-UTR-H-elongata_contig623:3597..3666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig623 3598..3666 +
1622931005.2744265-UTR-H-elongata_contig623:5781..62841622931005.2744265-UTR-H-elongata_contig623:5781..6284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig623 5782..6284 +
1691679659.0800672-UTR-H-elongata_contig623:5781..62841691679659.0800672-UTR-H-elongata_contig623:5781..6284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig623 5782..6284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.2403045-CDS-H-elongata_contig623:3666..40681622931005.2403045-CDS-H-elongata_contig623:3666..4068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 3667..4068 +
1691679659.0620494-CDS-H-elongata_contig623:3666..40681691679659.0620494-CDS-H-elongata_contig623:3666..4068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 3667..4068 +
1622931005.2579515-CDS-H-elongata_contig623:4785..57811622931005.2579515-CDS-H-elongata_contig623:4785..5781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 4786..5781 +
1691679659.071925-CDS-H-elongata_contig623:4785..57811691679659.071925-CDS-H-elongata_contig623:4785..5781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 4786..5781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig623.13802.1

>prot_H-elongata_contig623.13802.1 ID=prot_H-elongata_contig623.13802.1|Name=mRNA_H-elongata_contig623.13802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=466bp
MPERLSTEAVPSTILQRPVPARFSASPLPSFSTRAQSSNPVNGYSTDSSG
GADGVDGRGRSHEAGMSASFDTSMGQSDHYVLGVGDHGITGNGRGGHISS
ICDEDADDDMVIPGFTNPPDELLLPRGYDTGGCELKFGTEHFLGLNVVLP
LDQLHPSGDGARTRIRRRPRTNPPSHQRQLRGNSHKAHGANQDAGDFQDS
RGKTRPDDSSSSDKERCPSLVAAGGHGRGWKTNSKKRPRSNDWIDDDALS
EGMSVRQSADGDFTNVRDPLRERDRGGGGGVGGRVPQRQGRPSDAVDPLD
AYSGQDGGYDGCELSKVAKRKIGNKSKKTGWGWGVFRLWRGEPNGGLNSS
TGSSPPFQSKQQQSLRIEQDIKRLLESEEERGVQARGSSFRTFGSNIDSD
DIGISVSPLRPREAGATNKSSADPGVEPLRESEPPGSGSLPLLKRKNAPL
IVTVVVAPPAASTLS*
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mRNA from alignment at H-elongata_contig623:3072..6284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig623.13802.1 ID=mRNA_H-elongata_contig623.13802.1|Name=mRNA_H-elongata_contig623.13802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3213bp|location=Sequence derived from alignment at H-elongata_contig623:3072..6284+ (Himanthalia elongata Himel1 dioecious)
CCAAAGAAGGATCACGATTGCCTCCGCGTACGGCCGTGAAGCTACAGGTA
ATGCCCACAACCTCGTGTTGGTTGGCATCCAAACCGAGCTTGTTTATGTT
CCTCTTGAGTTATTCTCTTTAGTGTAGGATAACCAGACTACAACTCACCT
CAAGGGCGTCCAGGAAGACTTCCCGTTTCTGTCTATCGAGCCAACGTCGT
GATCGTCTCAGTTCCGTAGGCATGACCCTCCAAGGGGTTGTTGTCTTTGA
TGTATTTACGCCCATAAGGTGGATCACCAAAATTGATTCGACGTGACTGC
CATTATCCCCAATTACCACAGTTGAGATGCTGCGTCGTTGAAATCCAATT
ATCATTTTTCAATTAGAAAGAAATGCGACAAATACTGCATATAGTATTTA
GAGCTACGGGAATCGTTCGGGGGATGCGCAGCGGCACTTGTTCACCTTAC
AGCCAACCATATCTTGAAGTAACCGCGCGAGGTTGTTGATTCCCATGCTG
CTTGCCACGCTTCCCCTTTGCTGTAGGTTGTCCTCCAGCTACGGACAAGG
TCGCCGGTCGCCGTCGTCCGCCTGGTTCATAGAGGCGGTCACCTCATGCC
CGAAAGGTTGTCGACAGAAGCCGTCCCTTCTACAATATTGCAGCGGCCCG
TACCCGCGCGATTTTCTGCGTCACCATTGCCGTCTTTTTCTACGCGTGCT
CAGTCTTCCAACCCGGTCAACGGATATAGCACCGACAGCAGCGGTGGCGC
CGATGGCGTTGACGGTCGTGGTCGTAGTCATGAGGCTGGAATGAGTGCGA
GTTTCGATACTAGCATGGGCCAAAGTGATCATTACGTCTTGGGTGTTGGA
GACCATGGAATCACAGGTAACGGGAGAGGTGGGCACATTTCGAGCATTTG
CGATGAAGATGCGGATGATGACATGGTTATACCAGGCTTCACAAATCCTC
CGGACGAGCTTCTATTACCAAGAGGCTACGATACAGGCGGTTGCGAGGTA
CGAGGTTATTTGCCGTCTCGCGCACACTGGATCTATGTTGTGGGTGGTAT
ACCCTGTCACGCATACCACGCTTCTTACGCAACTACCCAGTGCCCCAATG
TAGCCTCAGACCTTTGAAACCACCTTGAATCTCTTCGACATGGTTGCTTA
ACTTCCCCCCGAATATCGTTCCGATACCCATTTCAACACTTTCCCATTCC
ACATGGGGAATCCATGCAGTATGTTCTCCGAGCTCAAAGACATCGATCGA
AGAGTTTTGTCTATCCCCTAATGGGTGAAGCGTGTAACATTTTGTAGGAT
GCCTGCCGAACAATGGATTGTTGAAAAGTCCTACAGCACCCGTACAGTTA
TCAGAGTACTCCGCCAGGAGTATTCATGAACATATCTTACTGTAGCATAC
ATAATACCTTTGTGTATGTTGTGTGCGTGCGGCGCCTATGAGTTCGCGCA
ATCAAAGTCCTTTTGCGGTACTTGGGAGCATAGTCGCGCCCGCTGAATGT
GTAACATTTGGTTACTCAGTGAATCCAACAAACCCATGAAATGTCCGGTT
TGACATGGCAAACGCAATGATGATGACTAAAGTCTGGTAACATCCTTGTG
AAACGCAGCCTGGCCGGCGAACACCCGGCGTTGTTGGGGTGCATGGTATA
TGCCTGTTACGATACGACATGCGTTTAATATACATGTACCCCTCCCCCAC
TGGTGATTTTGCAGCTGAAATTTGGCACAGAGCATTTTTTGGGGCTGAAC
GTAGTGCTTCCTCTGGATCAGCTCCACCCTTCCGGTGATGGTGCACGAAC
GCGAATTCGCCGAAGACCTCGAACGAACCCACCTTCTCATCAGAGGCAAC
TCCGCGGCAACTCGCATAAAGCCCACGGGGCCAACCAGGATGCCGGGGAT
TTCCAAGACTCAAGAGGAAAGACACGTCCGGATGATAGTAGTAGTTCCGA
CAAGGAGCGTTGCCCGTCCCTAGTGGCGGCGGGTGGACACGGCAGAGGAT
GGAAAACCAACAGCAAAAAGCGTCCAAGGTCCAACGATTGGATAGACGAT
GACGCGCTCTCAGAGGGGATGTCGGTTAGGCAGAGTGCAGATGGCGACTT
CACGAATGTTCGTGACCCACTTCGTGAGCGTGACCGCGGCGGCGGAGGCG
GGGTAGGCGGCCGGGTGCCGCAGCGGCAAGGACGCCCGTCAGACGCCGTG
GACCCCCTAGACGCTTACTCAGGTCAAGATGGAGGTTACGATGGCTGCGA
ATTGTCGAAAGTGGCCAAGAGGAAAATTGGAAACAAAAGTAAAAAAACGG
GATGGGGCTGGGGAGTTTTTCGTCTGTGGAGAGGAGAGCCAAATGGCGGT
CTGAATTCTTCGACCGGGAGTTCGCCACCCTTTCAGAGCAAGCAGCAGCA
ATCACTACGAATCGAGCAGGACATTAAAAGGCTACTTGAAAGCGAAGAGG
AACGGGGGGTTCAAGCCCGTGGATCGTCCTTTAGAACGTTTGGAAGCAAC
ATCGACAGCGATGATATAGGCATTAGTGTCTCCCCACTTCGGCCTCGCGA
GGCCGGAGCGACAAACAAGAGCTCGGCAGATCCAGGGGTAGAGCCCTTGA
GAGAGTCTGAACCTCCTGGTAGCGGGAGCCTTCCTTTGCTGAAGAGGAAA
AATGCGCCCTTAATCGTGACCGTTGTCGTGGCGCCACCAGCTGCTAGCAC
CCTATCGTGAGAATCCCCCTTTTGCTTCAAAGGCTTGATGTCCCAGTTAC
CCTGCAGTGTTGAAAAGGAACATATACACCCATTCTCTTGTCTATATTTG
AACGTGGATTGTCTGGGCTGATTTGAATAGATTTGTTCGGATTGAACGAT
TAGCGCAATTGACAGGGGAGGTGCGGGCGATGAAAATAGTAGCAGTAATC
TAGCTTCGATATCAATGTGCTGTGTCAGGCGAGGCGGAGCGAAGATGCGG
GTGAAGATGGACAAAATTTATGTTTCGAGAAACAAAGAACCTGCGAGACA
CTACATTGAACAAGCAAGTCAGTATATAGCCAATGATAATCGAAATTGAC
AGTATCTGTAGTATGGTGGTGATGGAATGTCTCTGGAAAGGATGGGTCTC
CCACGGGAGAGCTAGTGCTGTGCTGGGTGTTAGTGGTACAGGCTTGACAT
GGAACTCATGCCAGACGGGTAAAAAAGACCGATATATTATTTTTGATCAC
AGTAAGTCCACCT
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Coding sequence (CDS) from alignment at H-elongata_contig623:3072..6284+

>mRNA_H-elongata_contig623.13802.1 ID=mRNA_H-elongata_contig623.13802.1|Name=mRNA_H-elongata_contig623.13802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2796bp|location=Sequence derived from alignment at H-elongata_contig623:3072..6284+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGAAAGGTTGTCGACAGAAGCCGTCCCTTCTACAATATTGCAGCG
GCCCGTACCCGCGCGATTTTCTGCGTCACCATTGCCGTCTTTTTCTACGC
GTGCTCAGTCTTCCAACCCGGTCAACGGATATAGCACCGACAGCAGCGGT
GGCGCCGATGGCGTTGACGGTCGTGGTCGTAGTCATGAGGCTGGAATGAG
TGCGAGTTTCGATACTAGCATGGGCCAAAGTGATCATTACGTCTTGGGTG
TTGGAGACCATGGAATCACAGGTAACGGGAGAGGTGGGCACATTTCGAGC
ATTTGCGATGAAGATGCGGATGATGACATGGTTATACCAGGCTTCACAAA
TCCTCCGGACGAGCTTCTATTACCAAGAGGCTACGATACAGGCGGTTGCG
AGATGCCCGAAAGGTTGTCGACAGAAGCCGTCCCTTCTACAATATTGCAG
CGGCCCGTACCCGCGCGATTTTCTGCGTCACCATTGCCGTCTTTTTCTAC
GCGTGCTCAGTCTTCCAACCCGGTCAACGGATATAGCACCGACAGCAGCG
GTGGCGCCGATGGCGTTGACGGTCGTGGTCGTAGTCATGAGGCTGGAATG
AGTGCGAGTTTCGATACTAGCATGGGCCAAAGTGATCATTACGTCTTGGG
TGTTGGAGACCATGGAATCACAGGTAACGGGAGAGGTGGGCACATTTCGA
GCATTTGCGATGAAGATGCGGATGATGACATGGTTATACCAGGCTTCACA
AATCCTCCGGACGAGCTTCTATTACCAAGAGGCTACGATACAGGCGGTTG
CGAGCTGAAATTTGGCACAGAGCATTTTTTGGGGCTGAACGTAGTGCTTC
CTCTGGATCAGCTCCACCCTTCCGGTGATGGTGCACGAACGCGAATTCGC
CGAAGACCTCGAACGAACCCACCTTCTCATCAGAGGCAACTCCGCGGCAA
CTCGCATAAAGCCCACGGGGCCAACCAGGATGCCGGGGATTTCCAAGACT
CAAGAGGAAAGACACGTCCGGATGATAGTAGTAGTTCCGACAAGGAGCGT
TGCCCGTCCCTAGTGGCGGCGGGTGGACACGGCAGAGGATGGAAAACCAA
CAGCAAAAAGCGTCCAAGGTCCAACGATTGGATAGACGATGACGCGCTCT
CAGAGGGGATGTCGGTTAGGCAGAGTGCAGATGGCGACTTCACGAATGTT
CGTGACCCACTTCGTGAGCGTGACCGCGGCGGCGGAGGCGGGGTAGGCGG
CCGGGTGCCGCAGCGGCAAGGACGCCCGTCAGACGCCGTGGACCCCCTAG
ACGCTTACTCAGGTCAAGATGGAGGTTACGATGGCTGCGAATTGTCGAAA
GTGGCCAAGAGGAAAATTGGAAACAAAAGTAAAAAAACGGGATGGGGCTG
GGGAGTTTTTCGTCTGTGGAGAGGAGAGCCAAATGGCGGTCTGAATTCTT
CGACCGGGAGTTCGCCACCCTTTCAGAGCAAGCAGCAGCAATCACTACGA
ATCGAGCAGGACATTAAAAGGCTACTTGAAAGCGAAGAGGAACGGGGGGT
TCAAGCCCGTGGATCGTCCTTTAGAACGTTTGGAAGCAACATCGACAGCG
ATGATATAGGCATTAGTGTCTCCCCACTTCGGCCTCGCGAGGCCGGAGCG
ACAAACAAGAGCTCGGCAGATCCAGGGGTAGAGCCCTTGAGAGAGTCTGA
ACCTCCTGGTAGCGGGAGCCTTCCTTTGCTGAAGAGGAAAAATGCGCCCT
TAATCGTGACCGTTGTCGTGGCGCCACCAGCTGCTAGCACCCTATCGTGA
CTGAAATTTGGCACAGAGCATTTTTTGGGGCTGAACGTAGTGCTTCCTCT
GGATCAGCTCCACCCTTCCGGTGATGGTGCACGAACGCGAATTCGCCGAA
GACCTCGAACGAACCCACCTTCTCATCAGAGGCAACTCCGCGGCAACTCG
CATAAAGCCCACGGGGCCAACCAGGATGCCGGGGATTTCCAAGACTCAAG
AGGAAAGACACGTCCGGATGATAGTAGTAGTTCCGACAAGGAGCGTTGCC
CGTCCCTAGTGGCGGCGGGTGGACACGGCAGAGGATGGAAAACCAACAGC
AAAAAGCGTCCAAGGTCCAACGATTGGATAGACGATGACGCGCTCTCAGA
GGGGATGTCGGTTAGGCAGAGTGCAGATGGCGACTTCACGAATGTTCGTG
ACCCACTTCGTGAGCGTGACCGCGGCGGCGGAGGCGGGGTAGGCGGCCGG
GTGCCGCAGCGGCAAGGACGCCCGTCAGACGCCGTGGACCCCCTAGACGC
TTACTCAGGTCAAGATGGAGGTTACGATGGCTGCGAATTGTCGAAAGTGG
CCAAGAGGAAAATTGGAAACAAAAGTAAAAAAACGGGATGGGGCTGGGGA
GTTTTTCGTCTGTGGAGAGGAGAGCCAAATGGCGGTCTGAATTCTTCGAC
CGGGAGTTCGCCACCCTTTCAGAGCAAGCAGCAGCAATCACTACGAATCG
AGCAGGACATTAAAAGGCTACTTGAAAGCGAAGAGGAACGGGGGGTTCAA
GCCCGTGGATCGTCCTTTAGAACGTTTGGAAGCAACATCGACAGCGATGA
TATAGGCATTAGTGTCTCCCCACTTCGGCCTCGCGAGGCCGGAGCGACAA
ACAAGAGCTCGGCAGATCCAGGGGTAGAGCCCTTGAGAGAGTCTGAACCT
CCTGGTAGCGGGAGCCTTCCTTTGCTGAAGAGGAAAAATGCGCCCTTAAT
CGTGACCGTTGTCGTGGCGCCACCAGCTGCTAGCACCCTATCGTGA
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