mRNA_H-elongata_contig62141.13781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62141.13781.1
Unique NamemRNA_H-elongata_contig62141.13781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62141.13781.1 vs. uniprot
Match: UPI001D0055F2 (uncharacterized protein LOC123131583 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0055F2)

HSP 1 Score: 50.8 bits (120), Expect = 2.460e-5
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:   10 WWQQYGRMDGFDEIAKVATRCNSNIPASAGLERNWRLFGDVMGGRHARLGAEKAKKLVFVRANLKLVAND 219
            WW Q+G       + K A R  S   +S+G ERNW  F  V   + +RL  +K  KLVFVR NLK+ A +
Sbjct:  178 WWFQFG--GDVPALQKCAMRICSQCVSSSGCERNWSAFALVHTKQRSRLLYDKLHKLVFVRYNLKIRAEE 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62141.13781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D0055F22.460e-541.43uncharacterized protein LOC123131583 n=1 Tax=Triti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62141contigH-elongata_contig62141:767..1244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.6339483-CDS-H-elongata_contig62141:766..9031622931002.6339483-CDS-H-elongata_contig62141:766..903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62141 767..903 -
1691679658.0027218-CDS-H-elongata_contig62141:766..9031691679658.0027218-CDS-H-elongata_contig62141:766..903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62141 767..903 -
1622931002.6487448-CDS-H-elongata_contig62141:1117..12441622931002.6487448-CDS-H-elongata_contig62141:1117..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62141 1118..1244 -
1691679658.0136378-CDS-H-elongata_contig62141:1117..12441691679658.0136378-CDS-H-elongata_contig62141:1117..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62141 1118..1244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62141.13781.1prot_H-elongata_contig62141.13781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62141 767..1244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62141.13781.1

>prot_H-elongata_contig62141.13781.1 ID=prot_H-elongata_contig62141.13781.1|Name=mRNA_H-elongata_contig62141.13781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MASWWQQYGRMDGFDEIAKVATRCNSNIPASAGLERNWRLFGDVMGGRHA
RLGAEKAKKLVFVRANLKLVANDYTKWPFIAWDPASVA
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mRNA from alignment at H-elongata_contig62141:767..1244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62141.13781.1 ID=mRNA_H-elongata_contig62141.13781.1|Name=mRNA_H-elongata_contig62141.13781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at H-elongata_contig62141:767..1244- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGCTGGTGGCAACAATACGGGCGCATGGATGGCTTCGATGAAAT
CGCGAAGGTGGCCACCCGGTGCAACTCCAATATCCCCGCATCAGCTGGGT
TAGAGCGCAACTGGCGCCTGTTTGGGGGTACGTGGTTTTTCGTCTCACGC
ATTTGGTATTGTTGGTAAGCAGAGGCGATTTCCATAATTTGATCGTTGTT
TGCTGTTCGATGTTTCCTGTCTTGTATGTATTAGTTGTTTTGTTTCTGTT
TCTTGTTTCTTGCCTGCCGACTCGCCGCATCTGTCTGCTGTCGCTGATAC
ATAAAACATAAAACATCTCTGTCCTTTGCAAACCAATGCAGACGTAATGG
GAGGTCGACACGCTCGCTTGGGCGCTGAGAAGGCAAAGAAGCTGGTCTTC
GTGCGGGCCAACTTGAAGCTGGTCGCCAACGACTACACCAAGTGGCCGTT
CATCGCGTGGGACCCAGCATCTGTAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig62141:767..1244-

>mRNA_H-elongata_contig62141.13781.1 ID=mRNA_H-elongata_contig62141.13781.1|Name=mRNA_H-elongata_contig62141.13781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig62141:767..1244- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGCTGGTGGCAACAATACGGGCGCATGGATGGCTTCGATGAAAT
CGCGAAGGTGGCCACCCGGTGCAACTCCAATATCCCCGCATCAGCTGGGT
TAGAGCGCAACTGGCGCCTGTTTGGGGATGGCCAGCTGGTGGCAACAATA
CGGGCGCATGGATGGCTTCGATGAAATCGCGAAGGTGGCCACCCGGTGCA
ACTCCAATATCCCCGCATCAGCTGGGTTAGAGCGCAACTGGCGCCTGTTT
GGGGACGTAATGGGAGGTCGACACGCTCGCTTGGGCGCTGAGAAGGCAAA
GAAGCTGGTCTTCGTGCGGGCCAACTTGAAGCTGGTCGCCAACGACTACA
CCAAGTGGCCGTTCATCGCGTGGGACCCAGCATCTGTAGCAACGTAATGG
GAGGTCGACACGCTCGCTTGGGCGCTGAGAAGGCAAAGAAGCTGGTCTTC
GTGCGGGCCAACTTGAAGCTGGTCGCCAACGACTACACCAAGTGGCCGTT
CATCGCGTGGGACCCAGCATCTGTAGCA
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