mRNA_H-elongata_contig62127.13778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62127.13778.1
Unique NamemRNA_H-elongata_contig62127.13778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62127.13778.1 vs. uniprot
Match: A0A6H5JY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY04_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.110e-35
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    4 SRELSNAQGECQRLEQEAQELRRELEACRAQARESAEQANMTNFQNQVLLDMLAVARADEDAFKTKIAREDARYAELSRILEHAYTKIISAGLDPGVSDAP 306
            SREL+ AQGEC+RLE+E   LRR+LE CR  A+  AEQ NM  FQNQ+L+DMLAVARAD+  F+TK+ +E AR+A LSR LE AYTK+++AGLDPGVSDAP
Sbjct:   86 SRELATAQGECKRLEKEVMGLRRDLENCRKDAKRLAEQENMATFQNQLLIDMLAVARADQGIFRTKLEQESARHAVLSRSLEQAYTKLLAAGLDPGVSDAP 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62127.13778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY04_9PHAE3.110e-3566.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62127contigH-elongata_contig62127:2451..3401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004460.1
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.3566973-CDS-H-elongata_contig62127:2450..26001622931002.3566973-CDS-H-elongata_contig62127:2450..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 2451..2600 -
1691679657.899677-CDS-H-elongata_contig62127:2450..26001691679657.899677-CDS-H-elongata_contig62127:2450..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 2451..2600 -
1622931002.3738594-CDS-H-elongata_contig62127:3242..34011622931002.3738594-CDS-H-elongata_contig62127:3242..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 3243..3401 -
1691679657.91117-CDS-H-elongata_contig62127:3242..34011691679657.91117-CDS-H-elongata_contig62127:3242..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 3243..3401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62127.13778.1prot_H-elongata_contig62127.13778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62127 2451..3401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62127.13778.1

>prot_H-elongata_contig62127.13778.1 ID=prot_H-elongata_contig62127.13778.1|Name=mRNA_H-elongata_contig62127.13778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
ESRELSNAQGECQRLEQEAQELRRELEACRAQARESAEQANMTNFQNQVL
LDMLAVARADEDAFKTKIAREDARYAELSRILEHAYTKIISAGLDPGVSD
AP*
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mRNA from alignment at H-elongata_contig62127:2451..3401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62127.13778.1 ID=mRNA_H-elongata_contig62127.13778.1|Name=mRNA_H-elongata_contig62127.13778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=951bp|location=Sequence derived from alignment at H-elongata_contig62127:2451..3401- (Himanthalia elongata Himel1 dioecious)
GAGTCTCGAGAGTTGTCCAATGCACAAGGGGAGTGTCAGCGACTGGAGCA
GGAGGCCCAGGAGCTCCGACGAGAATTAGAGGCTTGCCGCGCACAGGCAC
GAGAGTCAGCCGAGCAGGCGAACATGACCAATTTTCAGAATCAAGTGCTC
CTTGATATGGTGCGTTCGAGCAGTGCGGCCACGAAGCAAACAAGAGTTCA
TATTTTTGTATGAAAAATATAACCTTAGTTAAACGACTTCCGCATATTAG
AACAAATGTCTATTGTGTATGGATTTTTACCGCCGTCAATAGTGTCCACA
CGCCACGTGTTTTGGGAGGCATTGATTTGCGCGAGGGCTTGAAGAAATAT
AGTAGGCACACGGAAATATTGTAAACGCTTGAAGCTGACGCACACAACGC
ACTTGCTTTACGATTGAAAACGCATACCAACTCGGGGGTGAGAGGCTCAG
CTCGCTCATCCTATGGGATTGAGTCTTTGGCCACGACCGAACTCGTCTCG
TGAGACCAAATTCTCAGGCGTGAACGGGAACAGGGAAACTTCATTTTCCC
TTTTTATCAATTTGCATTTAACCGCGCAAACCGGTATGATACGTAGTAAG
GGGGCGCCACGCCGGTTTGCAAATAATCTCCCCCCTTATGGGGAGTTATC
CCTGAAGACGTTGGATTGGCCTATTGGTGCAAGATTGGCAATCATCTCCG
GTTGATCCTTATGTTATCATCTGTGATGTGATCACCACACATGGAGCGAA
AAACGATGAATTGATGTTGTATCATATTTGCTTGTCTCTGGCTGGTGTCA
GCTTGCCGTCGCACGCGCAGACGAAGATGCCTTCAAGACGAAAATCGCGC
GTGAGGATGCTCGATACGCGGAGCTTAGTCGAATTCTGGAGCATGCGTAC
ACCAAGATAATCTCGGCAGGGCTTGACCCAGGGGTATCTGATGCGCCGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig62127:2451..3401-

>mRNA_H-elongata_contig62127.13778.1 ID=mRNA_H-elongata_contig62127.13778.1|Name=mRNA_H-elongata_contig62127.13778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig62127:2451..3401- (Himanthalia elongata Himel1 dioecious)
GAGTCTCGAGAGTTGTCCAATGCACAAGGGGAGTGTCAGCGACTGGAGCA
GGAGGCCCAGGAGCTCCGACGAGAATTAGAGGCTTGCCGCGCACAGGCAC
GAGAGTCAGCCGAGCAGGCGAACATGACCAATTTTCAGAATCAAGTGCTC
CTTGATATGGAGTCTCGAGAGTTGTCCAATGCACAAGGGGAGTGTCAGCG
ACTGGAGCAGGAGGCCCAGGAGCTCCGACGAGAATTAGAGGCTTGCCGCG
CACAGGCACGAGAGTCAGCCGAGCAGGCGAACATGACCAATTTTCAGAAT
CAAGTGCTCCTTGATATGCTTGCCGTCGCACGCGCAGACGAAGATGCCTT
CAAGACGAAAATCGCGCGTGAGGATGCTCGATACGCGGAGCTTAGTCGAA
TTCTGGAGCATGCGTACACCAAGATAATCTCGGCAGGGCTTGACCCAGGG
GTATCTGATGCGCCGTGACTTGCCGTCGCACGCGCAGACGAAGATGCCTT
CAAGACGAAAATCGCGCGTGAGGATGCTCGATACGCGGAGCTTAGTCGAA
TTCTGGAGCATGCGTACACCAAGATAATCTCGGCAGGGCTTGACCCAGGG
GTATCTGATGCGCCGTGA
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