mRNA_H-elongata_contig61643.13717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61643.13717.1
Unique NamemRNA_H-elongata_contig61643.13717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61643.13717.1 vs. uniprot
Match: A0A6H5KKY5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKY5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.610e-12
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:  256 VPIFFPPAVGVASEGLERALHRDPPPGGKVTGRDRIERLEGIDAVVDLLQRVPGYPGTSSAGSVASMDAVAAAARAVLV 492
            V +FFPP VG ASE LE A+ R  P  G +   +R +RL G+ +V++LLQ+V GYPG +++  + + DAVAAAAR VLV
Sbjct:   37 VMVFFPPPVGEASEALEEAMRRAAPADGSLD-EERPDRLVGVTSVIELLQQVAGYPGPTTSLGIINFDAVAAAARGVLV 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61643.13717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKY5_9PHAE2.610e-1250.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61643contigH-elongata_contig61643:2650..3165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.4300508-CDS-H-elongata_contig61643:2649..31651622930994.4300508-CDS-H-elongata_contig61643:2649..3165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61643 2650..3165 +
1691679654.4443023-CDS-H-elongata_contig61643:2649..31651691679654.4443023-CDS-H-elongata_contig61643:2649..3165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61643 2650..3165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61643.13717.1prot_H-elongata_contig61643.13717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61643 2650..3165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61643.13717.1

>prot_H-elongata_contig61643.13717.1 ID=prot_H-elongata_contig61643.13717.1|Name=mRNA_H-elongata_contig61643.13717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
GLRAEEDSADHADIVTPAVAEGGLVPDPDGSNEGFESLRGCDNRCGSISY
GNKSGGDTPEKDDCGGGSSRGSRGGGNRRRRETAPVPIFFPPAVGVASEG
LERALHRDPPPGGKVTGRDRIERLEGIDAVVDLLQRVPGYPGTSSAGSVA
SMDAVAAAARAVLVPPVARREE
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mRNA from alignment at H-elongata_contig61643:2650..3165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61643.13717.1 ID=mRNA_H-elongata_contig61643.13717.1|Name=mRNA_H-elongata_contig61643.13717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig61643:2650..3165+ (Himanthalia elongata Himel1 dioecious)
GGCCTAAGAGCGGAGGAGGACTCAGCGGACCACGCCGATATTGTGACACC
TGCGGTTGCAGAGGGCGGACTTGTCCCTGATCCTGACGGCAGCAACGAGG
GCTTCGAAAGTTTACGCGGTTGTGACAATAGATGTGGCAGCATAAGCTAT
GGCAACAAAAGTGGTGGCGATACGCCTGAGAAGGATGACTGCGGCGGTGG
AAGCAGTCGGGGCAGTCGAGGTGGTGGCAACCGAAGACGCCGGGAGACTG
CTCCGGTGCCCATTTTTTTCCCACCAGCGGTTGGTGTGGCCAGCGAGGGC
CTGGAGCGGGCGCTGCATCGCGACCCACCGCCGGGTGGAAAAGTCACGGG
CAGAGATCGGATCGAACGTTTGGAAGGAATTGACGCTGTGGTCGACCTTC
TCCAGCGTGTGCCAGGTTACCCTGGCACTTCCAGTGCTGGATCGGTGGCA
AGTATGGATGCTGTCGCAGCTGCTGCTCGCGCGGTTTTGGTACCGCCGGT
AGCGAGGCGCGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig61643:2650..3165+

>mRNA_H-elongata_contig61643.13717.1 ID=mRNA_H-elongata_contig61643.13717.1|Name=mRNA_H-elongata_contig61643.13717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig61643:2650..3165+ (Himanthalia elongata Himel1 dioecious)
GGCCTAAGAGCGGAGGAGGACTCAGCGGACCACGCCGATATTGTGACACC
TGCGGTTGCAGAGGGCGGACTTGTCCCTGATCCTGACGGCAGCAACGAGG
GCTTCGAAAGTTTACGCGGTTGTGACAATAGATGTGGCAGCATAAGCTAT
GGCAACAAAAGTGGTGGCGATACGCCTGAGAAGGATGACTGCGGCGGTGG
AAGCAGTCGGGGCAGTCGAGGTGGTGGCAACCGAAGACGCCGGGAGACTG
CTCCGGTGCCCATTTTTTTCCCACCAGCGGTTGGTGTGGCCAGCGAGGGC
CTGGAGCGGGCGCTGCATCGCGACCCACCGCCGGGTGGAAAAGTCACGGG
CAGAGATCGGATCGAACGTTTGGAAGGAATTGACGCTGTGGTCGACCTTC
TCCAGCGTGTGCCAGGTTACCCTGGCACTTCCAGTGCTGGATCGGTGGCA
AGTATGGATGCTGTCGCAGCTGCTGCTCGCGCGGTTTTGGTACCGCCGGT
AGCGAGGCGCGAAGAGGGCCTAAGAGCGGAGGAGGACTCAGCGGACCACG
CCGATATTGTGACACCTGCGGTTGCAGAGGGCGGACTTGTCCCTGATCCT
GACGGCAGCAACGAGGGCTTCGAAAGTTTACGCGGTTGTGACAATAGATG
TGGCAGCATAAGCTATGGCAACAAAAGTGGTGGCGATACGCCTGAGAAGG
ATGACTGCGGCGGTGGAAGCAGTCGGGGCAGTCGAGGTGGTGGCAACCGA
AGACGCCGGGAGACTGCTCCGGTGCCCATTTTTTTCCCACCAGCGGTTGG
TGTGGCCAGCGAGGGCCTGGAGCGGGCGCTGCATCGCGACCCACCGCCGG
GTGGAAAAGTCACGGGCAGAGATCGGATCGAACGTTTGGAAGGAATTGAC
GCTGTGGTCGACCTTCTCCAGCGTGTGCCAGGTTACCCTGGCACTTCCAG
TGCTGGATCGGTGGCAAGTATGGATGCTGTCGCAGCTGCTGCTCGCGCGG
TTTTGGTACCGCCGGTAGCGAGGCGCGAAGAG
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