mRNA_H-elongata_contig61022.13649.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61022.13649.1
Unique NamemRNA_H-elongata_contig61022.13649.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.890e-31
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            WKR+E SYPLLAR ARVVF APAS  V ERD   AGRMMTSSRS+ DAK V+MVLFLHGN+DL+P  I +LPADGVNG Q+KIPGRL
Sbjct:  653 WKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRL 739          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.120e-29
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDI 204
            WKR  SSYPLLARAARVVFGAPAS+AVLE DF DAGR+MTSSRS+TDAK V+M+LFLHGNLDLIP DI
Sbjct:   41 WKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.920e-27
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            WK    +YPLLAR ARVVFGAPAS+AVLERDFS+AGRMMTSSRS+ D+K V+M++FLHGNLDLIP DI KL       A++KIPGRL
Sbjct:  611 WKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRL 694          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.910e-26
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   22 YPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKN-VDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            YPLLAR ARVVFGAPAS+AVLERDFS+AGRMMTSSR + D+   V+M+LFLHGNLDLIP DI KL  + V  A+SKIPGRL
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRL 83          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 5.720e-25
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            WK+    YPLLARAARVVFGAPAS+AVLERDF+DA  MM SSRS+ DAK V+MVLFLHGNLDLIP  I +L  + V   Q+KIPGRL
Sbjct:  551 WKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRL 634          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.770e-25
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            WK    +YPLLAR ARVV GA AS+AVLE DFS+AGRMMTSSRS+ D+K V+M+LFLHGNLDLIP DI KL  + V  A++KIPGRL
Sbjct:  384 WKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRL 467          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.010e-23
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            WK    +YPLLAR ARVVFGAPAS+AVLE  FS+AGRM TSSRS+ D+  V+M++FLHGNL+LIP DI KL  + V  A++K PGRL
Sbjct:  147 WKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRL 230          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.800e-21
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   19 SYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKN-VDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            +Y LL   ARVVFGAPAS+A LERDFS+AGRMMTSSRS+ D+K  V+M+LFLHGNLDLIP DI  L  + V  A++  PGRL
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRL 83          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.590e-16
Identity = 47/88 (53.41%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSK-IPGRL 261
            WKR  SSYPLLARA RVVFGAPAS+A +E                       M+LFLHGNLDLIP DI  LP DG + A +K +PGRL
Sbjct:   41 WKRWMSSYPLLARATRVVFGAPASAAYVE-----------------------MILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRL 105          
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.820e-14
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   13 ESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKNVDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL 261
            ++ YP +ARAARV+   PASSAVLERDFS AGR++T +RS   A  V+MVLFL+GN + IP ++ KL        Q  +P RL
Sbjct:  721 QALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQ---GQEAVPRRL 800          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61022.13649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LFP4_ECTSI1.890e-3174.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE4.120e-2983.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.920e-2770.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.910e-2674.07Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI5.720e-2570.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE9.770e-2568.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE9.010e-2364.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE2.800e-2165.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE9.590e-1653.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVU5_9PHAE9.820e-1451.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61022contigH-elongata_contig61022:1696..1956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.4474223-CDS-H-elongata_contig61022:1695..19561622930985.4474223-CDS-H-elongata_contig61022:1695..1956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61022 1696..1956 -
1691679651.2302556-CDS-H-elongata_contig61022:1695..19561691679651.2302556-CDS-H-elongata_contig61022:1695..1956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61022 1696..1956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61022.13649.1prot_H-elongata_contig61022.13649.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61022 1696..1956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61022.13649.1

>prot_H-elongata_contig61022.13649.1 ID=prot_H-elongata_contig61022.13649.1|Name=mRNA_H-elongata_contig61022.13649.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
WKRRESSYPLLARAARVVFGAPASSAVLERDFSDAGRMMTSSRSSTDAKN
VDMVLFLHGNLDLIPGDIAKLPADGVNGAQSKIPGRL
back to top

mRNA from alignment at H-elongata_contig61022:1696..1956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61022.13649.1 ID=mRNA_H-elongata_contig61022.13649.1|Name=mRNA_H-elongata_contig61022.13649.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig61022:1696..1956- (Himanthalia elongata Himel1 dioecious)
TGGAAGAGGCGGGAGAGCTCGTACCCACTCCTGGCCCGGGCAGCTCGTGT GGTGTTTGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCGCGATTTCAGTG ATGCTGGGCGCATGATGACGTCATCGAGAAGCTCCACCGATGCCAAAAAC GTGGACATGGTCCTTTTTCTGCACGGCAATCTGGACCTCATTCCCGGGGA CATTGCAAAGCTGCCAGCCGACGGGGTCAACGGTGCGCAAAGCAAGATTC CTGGGCGGTTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61022:1696..1956-

>mRNA_H-elongata_contig61022.13649.1 ID=mRNA_H-elongata_contig61022.13649.1|Name=mRNA_H-elongata_contig61022.13649.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig61022:1696..1956- (Himanthalia elongata Himel1 dioecious)
TGGAAGAGGCGGGAGAGCTCGTACCCACTCCTGGCCCGGGCAGCTCGTGT
GGTGTTTGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCGCGATTTCAGTG
ATGCTGGGCGCATGATGACGTCATCGAGAAGCTCCACCGATGCCAAAAAC
GTGGACATGGTCCTTTTTCTGCACGGCAATCTGGACCTCATTCCCGGGGA
CATTGCAAAGCTGCCAGCCGACGGGGTCAACGGTGCGCAAAGCAAGATTC
CTGGGCGGTTGTGGAAGAGGCGGGAGAGCTCGTACCCACTCCTGGCCCGG
GCAGCTCGTGTGGTGTTTGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCG
CGATTTCAGTGATGCTGGGCGCATGATGACGTCATCGAGAAGCTCCACCG
ATGCCAAAAACGTGGACATGGTCCTTTTTCTGCACGGCAATCTGGACCTC
ATTCCCGGGGACATTGCAAAGCTGCCAGCCGACGGGGTCAACGGTGCGCA
AAGCAAGATTCCTGGGCGGTTG
back to top